Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2006-08-13 16:49:42 UTC
Update Date2022-09-22 18:34:18 UTC
HMDB IDHMDB0004326
Secondary Accession Numbers
  • HMDB04326
Metabolite Identification
Common Name2'-O-Methyladenosine
Description2'-O-Methyladenosine is a methylated adenine residue. 2'-O-Methyladenosine is a naturally occurring 2'-O-methylpurine nucleoside with long lasting hypotensive properties; resistance of 2'-O-methyladenosine against adenosine deaminase is thought to contribute to prolonged activity. 2'-O-Methyladenosine occurs in human fluids, and they increase in urines of untreated adenosine deaminase (ADA) deficient patients (OMIM 608958 ). (PMID: 9539952 , 6980397 ).
Structure
Data?1582752306
Synonyms
ValueSource
2-O-Methyla-denosineHMDB
2-O-MethyladenosineHMDB
Chemical FormulaC11H15N5O4
Average Molecular Weight281.2679
Monoisotopic Molecular Weight281.112403993
IUPAC Name5-(6-amino-9H-purin-9-yl)-2-(hydroxymethyl)-4-methoxyoxolan-3-ol
Traditional Name2-O-methyladenosine
CAS Registry Number2140-79-6
SMILES
COC1C(O)C(CO)OC1N1C=NC2=C(N)N=CN=C12
InChI Identifier
InChI=1S/C11H15N5O4/c1-19-8-7(18)5(2-17)20-11(8)16-4-15-6-9(12)13-3-14-10(6)16/h3-5,7-8,11,17-18H,2H2,1H3,(H2,12,13,14)
InChI KeyFPUGCISOLXNPPC-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as purine nucleosides. Purine nucleosides are compounds comprising a purine base attached to a ribosyl or deoxyribosyl moiety.
KingdomOrganic compounds
Super ClassNucleosides, nucleotides, and analogues
ClassPurine nucleosides
Sub ClassNot Available
Direct ParentPurine nucleosides
Alternative Parents
Substituents
  • Purine nucleoside
  • Glycosyl compound
  • N-glycosyl compound
  • 6-aminopurine
  • Imidazopyrimidine
  • Purine
  • Aminopyrimidine
  • Imidolactam
  • Pyrimidine
  • Monosaccharide
  • N-substituted imidazole
  • Azole
  • Heteroaromatic compound
  • Imidazole
  • Tetrahydrofuran
  • Secondary alcohol
  • Dialkyl ether
  • Ether
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Organic oxygen compound
  • Amine
  • Hydrocarbon derivative
  • Alcohol
  • Organic nitrogen compound
  • Organopnictogen compound
  • Primary amine
  • Primary alcohol
  • Organonitrogen compound
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic Properties

Experimental Collision Cross Sections

Adduct TypeData SourceCCS Value (Å2)Reference
[M-H]-MetCCS_train_neg158.37330932474
[M-H]-Not Available158.373http://allccs.zhulab.cn/database/detail?ID=AllCCS00000137
Predicted Molecular Properties
PropertyValueSource
Water Solubility9.54 g/LALOGPS
logP-0.88ALOGPS
logP-1.4ChemAxon
logS-1.5ALOGPS
pKa (Strongest Acidic)12.99ChemAxon
pKa (Strongest Basic)4.99ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area128.54 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity67.95 m³·mol⁻¹ChemAxon
Polarizability27.33 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+165.05431661259
DarkChem[M-H]-162.9731661259
DeepCCS[M-2H]-196.34930932474
DeepCCS[M+Na]+171.91530932474
AllCCS[M+H]+165.132859911
AllCCS[M+H-H2O]+161.632859911
AllCCS[M+NH4]+168.332859911
AllCCS[M+Na]+169.332859911
AllCCS[M-H]-163.932859911
AllCCS[M+Na-2H]-163.532859911
AllCCS[M+HCOO]-163.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
2'-O-MethyladenosineCOC1C(O)C(CO)OC1N1C=NC2=C(N)N=CN=C123438.6Standard polar33892256
2'-O-MethyladenosineCOC1C(O)C(CO)OC1N1C=NC2=C(N)N=CN=C122220.6Standard non polar33892256
2'-O-MethyladenosineCOC1C(O)C(CO)OC1N1C=NC2=C(N)N=CN=C122630.6Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
2'-O-Methyladenosine,1TMS,isomer #1COC1C(O[Si](C)(C)C)C(CO)OC1N1C=NC2=C(N)N=CN=C212650.1Semi standard non polar33892256
2'-O-Methyladenosine,1TMS,isomer #2COC1C(O)C(CO[Si](C)(C)C)OC1N1C=NC2=C(N)N=CN=C212622.0Semi standard non polar33892256
2'-O-Methyladenosine,1TMS,isomer #3COC1C(O)C(CO)OC1N1C=NC2=C(N[Si](C)(C)C)N=CN=C212661.8Semi standard non polar33892256
2'-O-Methyladenosine,2TMS,isomer #1COC1C(O[Si](C)(C)C)C(CO[Si](C)(C)C)OC1N1C=NC2=C(N)N=CN=C212605.0Semi standard non polar33892256
2'-O-Methyladenosine,2TMS,isomer #2COC1C(O[Si](C)(C)C)C(CO)OC1N1C=NC2=C(N[Si](C)(C)C)N=CN=C212627.2Semi standard non polar33892256
2'-O-Methyladenosine,2TMS,isomer #3COC1C(O)C(CO[Si](C)(C)C)OC1N1C=NC2=C(N[Si](C)(C)C)N=CN=C212618.6Semi standard non polar33892256
2'-O-Methyladenosine,2TMS,isomer #4COC1C(O)C(CO)OC1N1C=NC2=C(N([Si](C)(C)C)[Si](C)(C)C)N=CN=C212657.4Semi standard non polar33892256
2'-O-Methyladenosine,3TMS,isomer #1COC1C(O[Si](C)(C)C)C(CO[Si](C)(C)C)OC1N1C=NC2=C(N[Si](C)(C)C)N=CN=C212620.9Semi standard non polar33892256
2'-O-Methyladenosine,3TMS,isomer #1COC1C(O[Si](C)(C)C)C(CO[Si](C)(C)C)OC1N1C=NC2=C(N[Si](C)(C)C)N=CN=C212582.1Standard non polar33892256
2'-O-Methyladenosine,3TMS,isomer #1COC1C(O[Si](C)(C)C)C(CO[Si](C)(C)C)OC1N1C=NC2=C(N[Si](C)(C)C)N=CN=C213762.8Standard polar33892256
2'-O-Methyladenosine,3TMS,isomer #2COC1C(O[Si](C)(C)C)C(CO)OC1N1C=NC2=C(N([Si](C)(C)C)[Si](C)(C)C)N=CN=C212635.6Semi standard non polar33892256
2'-O-Methyladenosine,3TMS,isomer #2COC1C(O[Si](C)(C)C)C(CO)OC1N1C=NC2=C(N([Si](C)(C)C)[Si](C)(C)C)N=CN=C212713.9Standard non polar33892256
2'-O-Methyladenosine,3TMS,isomer #2COC1C(O[Si](C)(C)C)C(CO)OC1N1C=NC2=C(N([Si](C)(C)C)[Si](C)(C)C)N=CN=C213589.2Standard polar33892256
2'-O-Methyladenosine,3TMS,isomer #3COC1C(O)C(CO[Si](C)(C)C)OC1N1C=NC2=C(N([Si](C)(C)C)[Si](C)(C)C)N=CN=C212634.9Semi standard non polar33892256
2'-O-Methyladenosine,3TMS,isomer #3COC1C(O)C(CO[Si](C)(C)C)OC1N1C=NC2=C(N([Si](C)(C)C)[Si](C)(C)C)N=CN=C212761.4Standard non polar33892256
2'-O-Methyladenosine,3TMS,isomer #3COC1C(O)C(CO[Si](C)(C)C)OC1N1C=NC2=C(N([Si](C)(C)C)[Si](C)(C)C)N=CN=C213699.0Standard polar33892256
2'-O-Methyladenosine,4TMS,isomer #1COC1C(O[Si](C)(C)C)C(CO[Si](C)(C)C)OC1N1C=NC2=C(N([Si](C)(C)C)[Si](C)(C)C)N=CN=C212646.0Semi standard non polar33892256
2'-O-Methyladenosine,4TMS,isomer #1COC1C(O[Si](C)(C)C)C(CO[Si](C)(C)C)OC1N1C=NC2=C(N([Si](C)(C)C)[Si](C)(C)C)N=CN=C212678.1Standard non polar33892256
2'-O-Methyladenosine,4TMS,isomer #1COC1C(O[Si](C)(C)C)C(CO[Si](C)(C)C)OC1N1C=NC2=C(N([Si](C)(C)C)[Si](C)(C)C)N=CN=C213253.2Standard polar33892256
2'-O-Methyladenosine,1TBDMS,isomer #1COC1C(O[Si](C)(C)C(C)(C)C)C(CO)OC1N1C=NC2=C(N)N=CN=C212878.0Semi standard non polar33892256
2'-O-Methyladenosine,1TBDMS,isomer #2COC1C(O)C(CO[Si](C)(C)C(C)(C)C)OC1N1C=NC2=C(N)N=CN=C212870.5Semi standard non polar33892256
2'-O-Methyladenosine,1TBDMS,isomer #3COC1C(O)C(CO)OC1N1C=NC2=C(N[Si](C)(C)C(C)(C)C)N=CN=C212843.5Semi standard non polar33892256
2'-O-Methyladenosine,2TBDMS,isomer #1COC1C(O[Si](C)(C)C(C)(C)C)C(CO[Si](C)(C)C(C)(C)C)OC1N1C=NC2=C(N)N=CN=C213048.6Semi standard non polar33892256
2'-O-Methyladenosine,2TBDMS,isomer #2COC1C(O[Si](C)(C)C(C)(C)C)C(CO)OC1N1C=NC2=C(N[Si](C)(C)C(C)(C)C)N=CN=C213011.7Semi standard non polar33892256
2'-O-Methyladenosine,2TBDMS,isomer #3COC1C(O)C(CO[Si](C)(C)C(C)(C)C)OC1N1C=NC2=C(N[Si](C)(C)C(C)(C)C)N=CN=C213016.0Semi standard non polar33892256
2'-O-Methyladenosine,2TBDMS,isomer #4COC1C(O)C(CO)OC1N1C=NC2=C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)N=CN=C213051.0Semi standard non polar33892256
2'-O-Methyladenosine,3TBDMS,isomer #1COC1C(O[Si](C)(C)C(C)(C)C)C(CO[Si](C)(C)C(C)(C)C)OC1N1C=NC2=C(N[Si](C)(C)C(C)(C)C)N=CN=C213170.8Semi standard non polar33892256
2'-O-Methyladenosine,3TBDMS,isomer #1COC1C(O[Si](C)(C)C(C)(C)C)C(CO[Si](C)(C)C(C)(C)C)OC1N1C=NC2=C(N[Si](C)(C)C(C)(C)C)N=CN=C213219.4Standard non polar33892256
2'-O-Methyladenosine,3TBDMS,isomer #1COC1C(O[Si](C)(C)C(C)(C)C)C(CO[Si](C)(C)C(C)(C)C)OC1N1C=NC2=C(N[Si](C)(C)C(C)(C)C)N=CN=C213880.0Standard polar33892256
2'-O-Methyladenosine,3TBDMS,isomer #2COC1C(O[Si](C)(C)C(C)(C)C)C(CO)OC1N1C=NC2=C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)N=CN=C213185.3Semi standard non polar33892256
2'-O-Methyladenosine,3TBDMS,isomer #2COC1C(O[Si](C)(C)C(C)(C)C)C(CO)OC1N1C=NC2=C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)N=CN=C213304.0Standard non polar33892256
2'-O-Methyladenosine,3TBDMS,isomer #2COC1C(O[Si](C)(C)C(C)(C)C)C(CO)OC1N1C=NC2=C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)N=CN=C213682.6Standard polar33892256
2'-O-Methyladenosine,3TBDMS,isomer #3COC1C(O)C(CO[Si](C)(C)C(C)(C)C)OC1N1C=NC2=C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)N=CN=C213184.2Semi standard non polar33892256
2'-O-Methyladenosine,3TBDMS,isomer #3COC1C(O)C(CO[Si](C)(C)C(C)(C)C)OC1N1C=NC2=C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)N=CN=C213361.8Standard non polar33892256
2'-O-Methyladenosine,3TBDMS,isomer #3COC1C(O)C(CO[Si](C)(C)C(C)(C)C)OC1N1C=NC2=C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)N=CN=C213772.7Standard polar33892256
2'-O-Methyladenosine,4TBDMS,isomer #1COC1C(O[Si](C)(C)C(C)(C)C)C(CO[Si](C)(C)C(C)(C)C)OC1N1C=NC2=C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)N=CN=C213322.8Semi standard non polar33892256
2'-O-Methyladenosine,4TBDMS,isomer #1COC1C(O[Si](C)(C)C(C)(C)C)C(CO[Si](C)(C)C(C)(C)C)OC1N1C=NC2=C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)N=CN=C213471.5Standard non polar33892256
2'-O-Methyladenosine,4TBDMS,isomer #1COC1C(O[Si](C)(C)C(C)(C)C)C(CO[Si](C)(C)C(C)(C)C)OC1N1C=NC2=C(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)N=CN=C213547.5Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 2'-O-Methyladenosine GC-MS (Non-derivatized) - 70eV, Positivesplash10-00dl-9240000000-3ea016d9a2770b10bd9d2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2'-O-Methyladenosine GC-MS (2 TMS) - 70eV, Positivesplash10-00di-9552300000-9d6894ff762efc5d1abc2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2'-O-Methyladenosine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2'-O-Methyladenosine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2'-O-Methyladenosine 10V, Positive-QTOFsplash10-000i-0940000000-4258cf1d4a657afc568a2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2'-O-Methyladenosine 20V, Positive-QTOFsplash10-000i-0900000000-16b283015917c35b6afa2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2'-O-Methyladenosine 40V, Positive-QTOFsplash10-00kr-1900000000-764159e027e5bc9582db2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2'-O-Methyladenosine 10V, Negative-QTOFsplash10-001i-0590000000-1619c9ed36ad5f2d24222017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2'-O-Methyladenosine 20V, Negative-QTOFsplash10-001i-0900000000-2979a7c31046131cd93e2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2'-O-Methyladenosine 40V, Negative-QTOFsplash10-053r-1900000000-e7dce4fba6acb7142df72017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2'-O-Methyladenosine 10V, Negative-QTOFsplash10-001i-0920000000-fca1b99daec86f6d04462021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2'-O-Methyladenosine 20V, Negative-QTOFsplash10-001i-0900000000-8eb0799da82457adca072021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2'-O-Methyladenosine 40V, Negative-QTOFsplash10-001i-1900000000-1ded393a0d4859dfc5152021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2'-O-Methyladenosine 10V, Positive-QTOFsplash10-000i-0940000000-2d973e4e08e81c6d6f232021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2'-O-Methyladenosine 20V, Positive-QTOFsplash10-000i-0900000000-8d3b30a5315ec458509f2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2'-O-Methyladenosine 40V, Positive-QTOFsplash10-000i-0900000000-c0ec6f84f1b70c104cfa2021-09-23Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedCancer patients undergoing total body irradiation details
UrineDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedCancer patients undergoing total body irradiation details
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB023364
KNApSAcK IDNot Available
Chemspider ID280913
KEGG Compound IDC04779
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound317398
PDB IDNot Available
ChEBI ID119928
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Download (PDF)
General References
  1. Yamada T, Kageyama K, Joh Y, Konishi J, Ienaga K: Naturally occurring 2'-O-methylpurine nucleosides with hypotensive properties. Cell Mol Life Sci. 1998 Feb;54(2):125-8. [PubMed:9539952 ]
  2. Hirschhorn R, Ratech H, Rubinstein A, Papageorgiou P, Kesarwala H, Gelfand E, Roegner-Maniscalco V: Increased excretion of modified adenine nucleosides by children with adenosine deaminase deficiency. Pediatr Res. 1982 May;16(5):362-9. [PubMed:6980397 ]