Jump To Section:

Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References enzymes (1) Show 1 protein XML

Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2009-01-30 09:59:52 UTC

Update Date

2021-09-14 15:00:46 UTC

HMDB ID

HMDB0011627

Secondary Accession Numbers

HMDB11627

Metabolite Identification

Common Name

Farnesylcysteine

Description

In patients with chronic fatigue syndrome (CFS) we found increased IgM levels to S-farnesyl-L-cysteine. S-farnesyl-L-cysteine plays a key role in regulating cell growth, differentiation and apoptosis through RAS protein activity. The latter depends on their anchorage to the inner surface of the plasma membrane, which is promoted by their common carboxy-terminal S-farnesyl-cysteine. The presence of antibodies to S-farnesyl-L-cysteine suggest that RAS functions may have undergone damage by oxidative/nitrosative stress, causing disturbed functional activity in the regulation of cell growth. (PMID 17159817 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0011627
     RDKit          3D
Farnesylcysteine
 53 52  0  0  0  0  0  0  0  0999 V2000
    5.7516    1.1382   -1.6303 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0454   -0.1140   -1.2650 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9826   -1.2688   -2.2020 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4597   -0.2109   -0.0895 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5240    0.9494    0.8456 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1006    1.3820    1.1198 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3019    0.2868    1.7349 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7229   -0.2926    3.0524 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2208   -0.1704    1.1184 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3822   -1.2688    1.6910 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0309   -0.7421    1.9115 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5567   -0.3021    0.6037 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6889   -1.2522   -0.5050 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9036    0.9601    0.4611 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4441    1.5441   -0.7865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1012    2.2051   -0.3932 S   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2363    0.8521    0.0059 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4996   -0.0170   -1.2095 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.0869    0.8555   -2.2117 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4532   -1.0918   -0.8354 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5791   -1.1249   -1.3886 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0530   -2.0163    0.1152 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0601    1.9888   -1.6333 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5727    1.3828   -0.9019 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2187    1.0647   -2.6358 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8385   -1.9321   -1.9995 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0070   -1.8208   -2.0953 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0229   -0.8610   -3.2274 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9362   -1.1295    0.1921 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0521    0.6242    1.7413 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0621    1.7879    0.3910 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6082    1.6923    0.1939 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0829    2.2240    1.8525 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8768   -0.3458    3.7353 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1532   -1.3001    2.9393 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4490    0.4188    3.5222 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9697    0.2975    0.1639 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8018   -1.6610    2.6266 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4200   -2.1013    0.9668 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9678    0.1070    2.6411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6944   -1.5138    2.3226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0781   -2.1767   -0.3956 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4164   -0.8414   -1.4986 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7497   -1.6304   -0.5016 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7919    1.6262    1.3015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7852    2.3846   -1.0760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5262    0.8610   -1.6242 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2018    1.3124    0.2987 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8708    0.2596    0.8698 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5649   -0.4719   -1.5483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6655    1.8124   -2.1694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0339    0.4702   -3.1718 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6434   -2.8299    0.2625 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  2  0
 20 22  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  3 26  1  0
  3 27  1  0
  3 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  6 32  1  0
  6 33  1  0
  8 34  1  0
  8 35  1  0
  8 36  1  0
  9 37  1  0
 10 38  1  0
 10 39  1  0
 11 40  1  0
 11 41  1  0
 13 42  1  0
 13 43  1  0
 13 44  1  0
 14 45  1  0
 15 46  1  0
 15 47  1  0
 17 48  1  0
 17 49  1  0
 18 50  1  6
 19 51  1  0
 19 52  1  0
 22 53  1  0
M  END


  Mrv1652309042000342D          

 22 21  0  0  1  0            999 V2000
    4.2682  -11.9292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9827  -11.5167    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.6972  -11.9292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4117  -11.5167    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    7.1261  -11.9292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8406  -11.5167    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5551  -11.9292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2696  -11.5167    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9841  -11.9292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6985  -11.5167    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4130  -11.9292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1275  -11.5167    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8420  -11.9292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5565  -11.5167    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2710  -11.9292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.9854  -11.5167    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2710  -12.7542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5537  -11.5167    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2682  -12.7542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9827  -10.6917    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.5551  -12.7542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4130  -12.7542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  2  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
 11 10  2  0  0  0  0
 12 11  1  0  0  0  0
 13 12  1  0  0  0  0
 14 13  1  0  0  0  0
 15 14  2  0  0  0  0
 16 15  1  0  0  0  0
 17 15  1  0  0  0  0
 18  1  1  0  0  0  0
 19  1  2  0  0  0  0
  2 20  1  1  0  0  0
 21  7  1  0  0  0  0
 22 11  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0011627

> <DATABASE_NAME>
hmdb

> <SMILES>
CC(C)=CCC\C(C)=C\CC\C(C)=C\CSC[C@H](N)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C18H31NO2S/c1-14(2)7-5-8-15(3)9-6-10-16(4)11-12-22-13-17(19)18(20)21/h7,9,11,17H,5-6,8,10,12-13,19H2,1-4H3,(H,20,21)/b15-9+,16-11+/t17-/m0/s1

> <INCHI_KEY>
SYSLNQMKLROGCL-BCYUYYMPSA-N

> <FORMULA>
C18H31NO2S

> <MOLECULAR_WEIGHT>
325.509

> <EXACT_MASS>
325.207549931

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
53

> <JCHEM_AVERAGE_POLARIZABILITY>
39.42506667991615

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R)-2-amino-3-{[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl}propanoic acid

> <ALOGPS_LOGP>
1.48

> <JCHEM_LOGP>
2.1725843935013525

> <ALOGPS_LOGS>
-4.81

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.5632352114487555

> <JCHEM_PKA_STRONGEST_BASIC>
9.137260247302265

> <JCHEM_POLAR_SURFACE_AREA>
63.31999999999999

> <JCHEM_REFRACTIVITY>
99.64719999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.06e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
S-farnesylcysteine

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0011627
     RDKit          3D
Farnesylcysteine
 53 52  0  0  0  0  0  0  0  0999 V2000
    5.7516    1.1382   -1.6303 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0454   -0.1140   -1.2650 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9826   -1.2688   -2.2020 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4597   -0.2109   -0.0895 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5240    0.9494    0.8456 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1006    1.3820    1.1198 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3019    0.2868    1.7349 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7229   -0.2926    3.0524 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2208   -0.1704    1.1184 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3822   -1.2688    1.6910 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0309   -0.7421    1.9115 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5567   -0.3021    0.6037 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6889   -1.2522   -0.5050 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9036    0.9601    0.4611 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4441    1.5441   -0.7865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1012    2.2051   -0.3932 S   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2363    0.8521    0.0059 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4996   -0.0170   -1.2095 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.0869    0.8555   -2.2117 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4532   -1.0918   -0.8354 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5791   -1.1249   -1.3886 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0530   -2.0163    0.1152 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0601    1.9888   -1.6333 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5727    1.3828   -0.9019 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2187    1.0647   -2.6358 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8385   -1.9321   -1.9995 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0070   -1.8208   -2.0953 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0229   -0.8610   -3.2274 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9362   -1.1295    0.1921 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0521    0.6242    1.7413 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0621    1.7879    0.3910 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6082    1.6923    0.1939 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0829    2.2240    1.8525 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8768   -0.3458    3.7353 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1532   -1.3001    2.9393 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4490    0.4188    3.5222 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9697    0.2975    0.1639 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8018   -1.6610    2.6266 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4200   -2.1013    0.9668 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9678    0.1070    2.6411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6944   -1.5138    2.3226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0781   -2.1767   -0.3956 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4164   -0.8414   -1.4986 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7497   -1.6304   -0.5016 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7919    1.6262    1.3015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7852    2.3846   -1.0760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5262    0.8610   -1.6242 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2018    1.3124    0.2987 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8708    0.2596    0.8698 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5649   -0.4719   -1.5483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6655    1.8124   -2.1694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0339    0.4702   -3.1718 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6434   -2.8299    0.2625 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  2  0
 20 22  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  3 26  1  0
  3 27  1  0
  3 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  6 32  1  0
  6 33  1  0
  8 34  1  0
  8 35  1  0
  8 36  1  0
  9 37  1  0
 10 38  1  0
 10 39  1  0
 11 40  1  0
 11 41  1  0
 13 42  1  0
 13 43  1  0
 13 44  1  0
 14 45  1  0
 15 46  1  0
 15 47  1  0
 17 48  1  0
 17 49  1  0
 18 50  1  6
 19 51  1  0
 19 52  1  0
 22 53  1  0
M  END

HEADER    PROTEIN                                 04-SEP-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-20         0                                  
HETATM    1  C   UNK     0       7.967 -22.268   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.301 -21.498   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.635 -22.268   0.000  0.00  0.00           C+0
HETATM    4  S   UNK     0      11.969 -21.498   0.000  0.00  0.00           S+0
HETATM    5  C   UNK     0      13.302 -22.268   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      14.636 -21.498   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      15.970 -22.268   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      17.303 -21.498   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      18.637 -22.268   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      19.971 -21.498   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      21.304 -22.268   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      22.638 -21.498   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      23.972 -22.268   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      25.305 -21.498   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      26.639 -22.268   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      27.973 -21.498   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      26.639 -23.808   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       6.634 -21.498   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       7.967 -23.808   0.000  0.00  0.00           O+0
HETATM   20  N   UNK     0       9.301 -19.958   0.000  0.00  0.00           N+0
HETATM   21  C   UNK     0      15.970 -23.808   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      21.304 -23.808   0.000  0.00  0.00           C+0
CONECT    1    2   18   19                                                  
CONECT    2    1    3   20                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   21                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   22                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18    1                                                            
CONECT   19    1                                                            
CONECT   20    2                                                            
CONECT   21    7                                                            
CONECT   22   11                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   42    0
END

COMPND    HMDB0011627
HETATM    1  C1  UNL     1       5.752   1.138  -1.630  1.00  0.00           C  
HETATM    2  C2  UNL     1       5.045  -0.114  -1.265  1.00  0.00           C  
HETATM    3  C3  UNL     1       4.983  -1.269  -2.202  1.00  0.00           C  
HETATM    4  C4  UNL     1       4.460  -0.211  -0.090  1.00  0.00           C  
HETATM    5  C5  UNL     1       4.524   0.949   0.846  1.00  0.00           C  
HETATM    6  C6  UNL     1       3.101   1.382   1.120  1.00  0.00           C  
HETATM    7  C7  UNL     1       2.302   0.287   1.735  1.00  0.00           C  
HETATM    8  C8  UNL     1       2.723  -0.293   3.052  1.00  0.00           C  
HETATM    9  C9  UNL     1       1.221  -0.170   1.118  1.00  0.00           C  
HETATM   10  C10 UNL     1       0.382  -1.269   1.691  1.00  0.00           C  
HETATM   11  C11 UNL     1      -1.031  -0.742   1.911  1.00  0.00           C  
HETATM   12  C12 UNL     1      -1.557  -0.302   0.604  1.00  0.00           C  
HETATM   13  C13 UNL     1      -1.689  -1.252  -0.505  1.00  0.00           C  
HETATM   14  C14 UNL     1      -1.904   0.960   0.461  1.00  0.00           C  
HETATM   15  C15 UNL     1      -2.444   1.544  -0.786  1.00  0.00           C  
HETATM   16  S1  UNL     1      -4.101   2.205  -0.393  1.00  0.00           S  
HETATM   17  C16 UNL     1      -5.236   0.852   0.006  1.00  0.00           C  
HETATM   18  C17 UNL     1      -5.500  -0.017  -1.209  1.00  0.00           C  
HETATM   19  N1  UNL     1      -6.087   0.855  -2.212  1.00  0.00           N  
HETATM   20  C18 UNL     1      -6.453  -1.092  -0.835  1.00  0.00           C  
HETATM   21  O1  UNL     1      -7.579  -1.125  -1.389  1.00  0.00           O  
HETATM   22  O2  UNL     1      -6.053  -2.016   0.115  1.00  0.00           O  
HETATM   23  H1  UNL     1       5.060   1.989  -1.633  1.00  0.00           H  
HETATM   24  H2  UNL     1       6.573   1.383  -0.902  1.00  0.00           H  
HETATM   25  H3  UNL     1       6.219   1.065  -2.636  1.00  0.00           H  
HETATM   26  H4  UNL     1       5.839  -1.932  -2.000  1.00  0.00           H  
HETATM   27  H5  UNL     1       4.007  -1.821  -2.095  1.00  0.00           H  
HETATM   28  H6  UNL     1       5.023  -0.861  -3.227  1.00  0.00           H  
HETATM   29  H7  UNL     1       3.936  -1.130   0.192  1.00  0.00           H  
HETATM   30  H8  UNL     1       5.052   0.624   1.741  1.00  0.00           H  
HETATM   31  H9  UNL     1       5.062   1.788   0.391  1.00  0.00           H  
HETATM   32  H10 UNL     1       2.608   1.692   0.194  1.00  0.00           H  
HETATM   33  H11 UNL     1       3.083   2.224   1.852  1.00  0.00           H  
HETATM   34  H12 UNL     1       1.877  -0.346   3.735  1.00  0.00           H  
HETATM   35  H13 UNL     1       3.153  -1.300   2.939  1.00  0.00           H  
HETATM   36  H14 UNL     1       3.449   0.419   3.522  1.00  0.00           H  
HETATM   37  H15 UNL     1       0.970   0.297   0.164  1.00  0.00           H  
HETATM   38  H16 UNL     1       0.802  -1.661   2.627  1.00  0.00           H  
HETATM   39  H17 UNL     1       0.420  -2.101   0.967  1.00  0.00           H  
HETATM   40  H18 UNL     1      -0.968   0.107   2.641  1.00  0.00           H  
HETATM   41  H19 UNL     1      -1.694  -1.514   2.323  1.00  0.00           H  
HETATM   42  H20 UNL     1      -1.078  -2.177  -0.396  1.00  0.00           H  
HETATM   43  H21 UNL     1      -1.416  -0.841  -1.499  1.00  0.00           H  
HETATM   44  H22 UNL     1      -2.750  -1.630  -0.502  1.00  0.00           H  
HETATM   45  H23 UNL     1      -1.792   1.626   1.302  1.00  0.00           H  
HETATM   46  H24 UNL     1      -1.785   2.385  -1.076  1.00  0.00           H  
HETATM   47  H25 UNL     1      -2.526   0.861  -1.624  1.00  0.00           H  
HETATM   48  H26 UNL     1      -6.202   1.312   0.299  1.00  0.00           H  
HETATM   49  H27 UNL     1      -4.871   0.260   0.870  1.00  0.00           H  
HETATM   50  H28 UNL     1      -4.565  -0.472  -1.548  1.00  0.00           H  
HETATM   51  H29 UNL     1      -5.665   1.812  -2.169  1.00  0.00           H  
HETATM   52  H30 UNL     1      -6.034   0.470  -3.172  1.00  0.00           H  
HETATM   53  H31 UNL     1      -6.643  -2.830   0.263  1.00  0.00           H  
CONECT    1    2   23   24   25
CONECT    2    3    4    4
CONECT    3   26   27   28
CONECT    4    5   29
CONECT    5    6   30   31
CONECT    6    7   32   33
CONECT    7    8    9    9
CONECT    8   34   35   36
CONECT    9   10   37
CONECT   10   11   38   39
CONECT   11   12   40   41
CONECT   12   13   14   14
CONECT   13   42   43   44
CONECT   14   15   45
CONECT   15   16   46   47
CONECT   16   17
CONECT   17   18   48   49
CONECT   18   19   20   50
CONECT   19   51   52
CONECT   20   21   21   22
CONECT   22   53
END

HMDB0011627
     RDKit          3D
Farnesylcysteine
 53 52  0  0  0  0  0  0  0  0999 V2000
    5.7516    1.1382   -1.6303 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0454   -0.1140   -1.2650 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9826   -1.2688   -2.2020 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4597   -0.2109   -0.0895 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5240    0.9494    0.8456 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1006    1.3820    1.1198 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3019    0.2868    1.7349 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7229   -0.2926    3.0524 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2208   -0.1704    1.1184 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3822   -1.2688    1.6910 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0309   -0.7421    1.9115 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5567   -0.3021    0.6037 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6889   -1.2522   -0.5050 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9036    0.9601    0.4611 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4441    1.5441   -0.7865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1012    2.2051   -0.3932 S   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2363    0.8521    0.0059 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4996   -0.0170   -1.2095 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.0869    0.8555   -2.2117 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4532   -1.0918   -0.8354 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5791   -1.1249   -1.3886 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0530   -2.0163    0.1152 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0601    1.9888   -1.6333 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5727    1.3828   -0.9019 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2187    1.0647   -2.6358 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8385   -1.9321   -1.9995 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0070   -1.8208   -2.0953 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0229   -0.8610   -3.2274 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9362   -1.1295    0.1921 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0521    0.6242    1.7413 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0621    1.7879    0.3910 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6082    1.6923    0.1939 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0829    2.2240    1.8525 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8768   -0.3458    3.7353 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1532   -1.3001    2.9393 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4490    0.4188    3.5222 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9697    0.2975    0.1639 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8018   -1.6610    2.6266 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4200   -2.1013    0.9668 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9678    0.1070    2.6411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6944   -1.5138    2.3226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0781   -2.1767   -0.3956 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4164   -0.8414   -1.4986 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7497   -1.6304   -0.5016 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7919    1.6262    1.3015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7852    2.3846   -1.0760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5262    0.8610   -1.6242 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2018    1.3124    0.2987 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8708    0.2596    0.8698 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5649   -0.4719   -1.5483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6655    1.8124   -2.1694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0339    0.4702   -3.1718 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6434   -2.8299    0.2625 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  2  0
 20 22  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  3 26  1  0
  3 27  1  0
  3 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  6 32  1  0
  6 33  1  0
  8 34  1  0
  8 35  1  0
  8 36  1  0
  9 37  1  0
 10 38  1  0
 10 39  1  0
 11 40  1  0
 11 41  1  0
 13 42  1  0
 13 43  1  0
 13 44  1  0
 14 45  1  0
 15 46  1  0
 15 47  1  0
 17 48  1  0
 17 49  1  0
 18 50  1  6
 19 51  1  0
 19 52  1  0
 22 53  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
S-(2E,6E)-Farnesyl-L-cysteine	ChEBI
S-trans-trans-Farnesylcysteine	Kegg
(e,e)-L-S-(3,7,11-Trimethyl-2,6,10-dodecatrienyl)-cysteine	HMDB
S-all-trans-Farnesyl-L-cysteine	HMDB
S-[(2E,6E)-3,7,11-Trimethyl-2,6,10-dodecatrien-1-yl]-L-cysteine	HMDB
S-[(2E,6E)-3,7,11-Trimethyl-2,6,10-dodecatrienyl]-L-cysteine,(9ci)	HMDB
S-Farnesyl cysteine	MeSH, HMDB
S-Farnesylcysteine	MeSH, HMDB

Chemical Formula

C₁₈H₃₁NO₂S

Average Molecular Weight

325.509

Monoisotopic Molecular Weight

325.207549931

IUPAC Name

(2R)-2-amino-3-{[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl}propanoic acid

Traditional Name

S-farnesylcysteine

CAS Registry Number

68000-92-0

SMILES

N[C@@H](CSC\C=C(/C)CC\C=C(/C)CCC=C(C)C)C(O)=O

InChI Identifier

InChI=1S/C18H31NO2S/c1-14(2)7-5-8-15(3)9-6-10-16(4)11-12-22-13-17(19)18(20)21/h7,9,11,17H,5-6,8,10,12-13,19H2,1-4H3,(H,20,21)/b15-9+,16-11+/t17-/m0/s1

InChI Key

SYSLNQMKLROGCL-BCYUYYMPSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Farsesane sesquiterpenoid
L-cysteine-s-conjugate
Cysteine or derivatives
Alpha-amino acid
Alpha-amino acid or derivatives
L-alpha-amino acid
Amino acid or derivatives
Amino acid
Dialkylthioether
Sulfenyl compound
Thioether
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organosulfur compound
Organooxygen compound
Organonitrogen compound
Primary amine
Primary aliphatic amine
Organopnictogen compound
Organic oxide
Carbonyl group
Amine
Organic oxygen compound
Organic nitrogen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

S-farnesyl-L-cysteine (CHEBI:62197 )

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Membrane (HMDB: HMDB0011627)

Source

Endogenous

Endogenous (HMDB: HMDB0011627)

Pheasant (FooDB: FOOD00430)
Squab (FooDB: FOOD00481)
Turkey (FooDB: FOOD00494)
Quail (FooDB: FOOD00541)
Anatidae (FooDB: FOOD00576)
Rock ptarmigan (FooDB: FOOD00597)
Columbidae (Dove, Pigeon) (FooDB: FOOD00610)
Chicken (FooDB: FOOD00329)
Mallard duck (FooDB: FOOD00353)
Emu (FooDB: FOOD00360)
Greylag goose (FooDB: FOOD00368)
Guinea hen (FooDB: FOOD00373)
Ostrich (FooDB: FOOD00422)
Velvet duck (FooDB: FOOD00427)

Lagomorph

Ovis

Sheep (Mutton, Lamb) (FooDB: FOOD00473)

Bovine

Venison

Deer (FooDB: FOOD00524)
Mule deer (FooDB: FOOD00348)
Elk (FooDB: FOOD00359)

Caprae

Domestic goat (FooDB: FOOD00529)

Swine

Domestic pig (FooDB: FOOD00536)
Wild boar (FooDB: FOOD00307)

Equine

Horse (FooDB: FOOD00378)

Herb and spice mixture

Curry powder (FooDB: FOOD00678)

Herbs and Spices (FooDB: FOOD00866)

Vegetable

Cabbage

Onion-family vegetable

Allium (FooDB: FOOD00005)
Garden onion (FooDB: FOOD00006)
Leek (FooDB: FOOD00007)
Garden onion (var.) (FooDB: FOOD00226)
Shallot (FooDB: FOOD00243)
Wild leek (FooDB: FOOD00396)
Red onion (FooDB: FOOD00962)
Green onion (FooDB: FOOD00963)
Onion-family vegetables (FooDB: FOOD00855)

Root vegetable

Shoot vegetable

Leaf vegetable

Common beet (FooDB: FOOD00025)
Endive (FooDB: FOOD00048)
Rocket salad (ssp.) (FooDB: FOOD00077)
Swamp cabbage (FooDB: FOOD00091)
Lettuce (FooDB: FOOD00095)
Garden cress (FooDB: FOOD00099)
Spinach (FooDB: FOOD00178)
Swiss chard (FooDB: FOOD00237)
Chicory leaves (FooDB: FOOD00250)
Garland chrysanthemum (FooDB: FOOD00333)
Corn salad (FooDB: FOOD00340)
Jute (FooDB: FOOD00389)
Lambsquarters (FooDB: FOOD00394)
Malabar spinach (FooDB: FOOD00404)
New Zealand spinach (FooDB: FOOD00415)
Yautia (FooDB: FOOD00510)
Ostrich fern (FooDB: FOOD00556)
Romaine lettuce (FooDB: FOOD00888)
Iceberg lettuce (FooDB: FOOD00973)
Pea shoots (FooDB: FOOD00975)
Yau choy (FooDB: FOOD00976)
Water spinach (FooDB: FOOD00977)
Rocket salad (FooDB: FOOD00244)
Green vegetables (FooDB: FOOD00872)

Fruit vegetable

Pepper (FooDB: FOOD00040)
Olive (FooDB: FOOD00121)
Avocado (FooDB: FOOD00130)
Garden tomato (FooDB: FOOD00171)
Cherry tomato (FooDB: FOOD00172)
Garden tomato (var.) (FooDB: FOOD00173)
Eggplant (FooDB: FOOD00174)
Pepper (C. baccatum) (FooDB: FOOD00231)
Pepper (C. chinense) (FooDB: FOOD00232)
Pepper (Capsicum) (FooDB: FOOD00233)
Groundcherry (FooDB: FOOD00371)
Pepper (C. frutescens) (FooDB: FOOD00428)
Mexican groundcherry (FooDB: FOOD00491)
Pepper (C. pubescens) (FooDB: FOOD00849)
Green bell pepper (FooDB: FOOD00877)
Yellow bell pepper (FooDB: FOOD00878)
Orange bell pepper (FooDB: FOOD00879)
Red bell pepper (FooDB: FOOD00880)
Italian sweet red pepper (FooDB: FOOD00881)
Jalapeno pepper (FooDB: FOOD00955)
Cubanelle pepper (FooDB: FOOD00971)

Tuber

Stalk vegetable

Other vegetable

Giant butterbur (FooDB: FOOD00314)
Carob (FooDB: FOOD00321)
Chinese water chestnut (FooDB: FOOD00332)
Horseradish tree (FooDB: FOOD00379)
Sacred lotus (FooDB: FOOD00402)
Nopal (FooDB: FOOD00416)
Okra (FooDB: FOOD00420)
Sesbania flower (FooDB: FOOD00469)
Agave (FooDB: FOOD00563)
Narrowleaf cattail (FooDB: FOOD00564)
Heart of palm (FooDB: FOOD00718)
Tree fern (FooDB: FOOD00797)

Mushroom

Castanospermum australe (FooDB: FOOD00893)
Gentiana lutea (FooDB: FOOD00894)
Juniperus communis (FooDB: FOOD00895)
Albizia gummifera (FooDB: FOOD00896)

Brassica

Brassicas (FooDB: FOOD00857)

Fruit

Tropical fruit

Citrus

Lime (FooDB: FOOD00053)
Lemon (FooDB: FOOD00054)
Pummelo (FooDB: FOOD00055)
Mandarin orange (Clementine, Tangerine) (FooDB: FOOD00056)
Sweet orange (FooDB: FOOD00057)
Grapefruit/Pummelo hybrid (FooDB: FOOD00255)
Grapefruit (FooDB: FOOD00256)
Persian lime (FooDB: FOOD00543)
Sour orange (FooDB: FOOD00918)
Mikan (FooDB: FOOD00932)
Clementine (FooDB: FOOD00959)
Citrus (FooDB: FOOD00859)

Pome

Berry

Black crowberry (FooDB: FOOD00075)
Strawberry (FooDB: FOOD00083)
Black huckleberry (FooDB: FOOD00084)
Sea-buckthornberry (FooDB: FOOD00087)
Mulberry (FooDB: FOOD00116)
Black mulberry (FooDB: FOOD00117)
Black chokeberry (FooDB: FOOD00136)
Blackcurrant (FooDB: FOOD00155)
Redcurrant (FooDB: FOOD00156)
Gooseberry (FooDB: FOOD00157)
Cloudberry (FooDB: FOOD00161)
Red raspberry (FooDB: FOOD00162)
Black raspberry (FooDB: FOOD00163)
Black elderberry (FooDB: FOOD00166)
Rowanberry (FooDB: FOOD00176)
Vaccinium (Blueberry, Cranberry, Huckleberry) (FooDB: FOOD00188)
Lowbush blueberry (FooDB: FOOD00189)
Sparkleberry (FooDB: FOOD00190)
Highbush blueberry (FooDB: FOOD00191)
American cranberry (FooDB: FOOD00192)
Bilberry (FooDB: FOOD00193)
Lingonberry (FooDB: FOOD00194)
Muscadine grape (FooDB: FOOD00203)
Common grape (FooDB: FOOD00204)
Arctic blackberry (FooDB: FOOD00207)
Bayberry (FooDB: FOOD00209)
Elliott's blueberry (FooDB: FOOD00210)
Canada blueberry (FooDB: FOOD00211)
Bog bilberry (FooDB: FOOD00212)
Buffalo currant (FooDB: FOOD00213)
European cranberry (FooDB: FOOD00217)
Deerberry (FooDB: FOOD00218)
Cascade huckleberry (FooDB: FOOD00220)
Oval-leaf huckleberry (FooDB: FOOD00221)
Evergreen huckleberry (FooDB: FOOD00222)
Red huckleberry (FooDB: FOOD00223)
Summer grape (FooDB: FOOD00227)
Fox grape (FooDB: FOOD00228)
Half-highbush blueberry (FooDB: FOOD00248)
Jostaberry (FooDB: FOOD00257)
Sweet rowanberry (FooDB: FOOD00265)
Skunk currant (FooDB: FOOD00267)
Squashberry (FooDB: FOOD00344)
Elderberry (FooDB: FOOD00358)
Grape (FooDB: FOOD00369)
Alaska blueberry (FooDB: FOOD00380)
Loganberry (FooDB: FOOD00400)
Ohelo berry (FooDB: FOOD00419)
Salmonberry (FooDB: FOOD00456)
Strawberry guava (FooDB: FOOD00482)
Boysenberry (FooDB: FOOD00542)
Chinese bayberry (FooDB: FOOD00852)
Saskatoon berry (FooDB: FOOD00884)
Nanking cherry (FooDB: FOOD00885)
Rabbiteye blueberry (FooDB: FOOD00898)
Blackberry (FooDB: FOOD00906)
Partridge berry (FooDB: FOOD00931)
Green grape (FooDB: FOOD00964)
Red grape (FooDB: FOOD00965)
Black plum (FooDB: FOOD00966)
Black raisin (FooDB: FOOD00968)
Chinese plum (FooDB: FOOD00978)
Green plum (FooDB: FOOD00979)
Wampee (FooDB: FOOD00980)
Goji (FooDB: FOOD00982)
Monk fruit (FooDB: FOOD00983)
Hawthorn (FooDB: FOOD00985)
Lantern fruit (FooDB: FOOD00986)
Cape gooseberry (FooDB: FOOD00988)
Rubus (Blackberry, Raspberry) (FooDB: FOOD00160)

Other fruit

Fig (FooDB: FOOD00081)
Date (FooDB: FOOD00135)
Jujube (FooDB: FOOD00388)

Drupe

Prunus (Cherry, Plum) (FooDB: FOOD00143)
Apricot (FooDB: FOOD00144)
Sweet cherry (FooDB: FOOD00145)
Sour cherry (FooDB: FOOD00146)
European plum (FooDB: FOOD00147)
Peach (FooDB: FOOD00149)
Nectarine (FooDB: FOOD00229)
Peach (var.) (FooDB: FOOD00230)
Common chokecherry (FooDB: FOOD00562)

Fruits (FooDB: FOOD00871)

Nut

Cashew nut (FooDB: FOOD00011)
Peanut (FooDB: FOOD00016)
Brazil nut (FooDB: FOOD00024)
Pecan nut (FooDB: FOOD00044)
Chestnut (FooDB: FOOD00045)
Common hazelnut (FooDB: FOOD00062)
Black walnut (FooDB: FOOD00093)
Common walnut (FooDB: FOOD00094)
Pine nut (FooDB: FOOD00138)
Pistachio (FooDB: FOOD00140)
Almond (FooDB: FOOD00148)
Macadamia nut (M. tetraphylla) (FooDB: FOOD00225)
Japanese walnut (FooDB: FOOD00240)
Acorn (FooDB: FOOD00282)
Beech nut (FooDB: FOOD00299)
Butternut (FooDB: FOOD00316)
Chinese chestnut (FooDB: FOOD00331)
European chestnut (FooDB: FOOD00363)
Hazelnut (FooDB: FOOD00376)
Hickory nut (FooDB: FOOD00377)
Japanese chestnut (FooDB: FOOD00385)
Pili nut (FooDB: FOOD00432)
Colorado pinyon (FooDB: FOOD00433)
Macadamia nut (FooDB: FOOD00525)
Walnut (FooDB: FOOD00608)
Mixed nuts (FooDB: FOOD00771)
Nuts (FooDB: FOOD00869)

Cereal and cereal product

Cereal

Cereal product

Dough

Sourdough (FooDB: FOOD00275)

Leavened bread

Flat bread

Other bread

Potato bread (FooDB: FOOD00811)
Other bread (FooDB: FOOD00269)

Sweet bread

Raisin bread (FooDB: FOOD00817)

Cereals and cereal products (FooDB: FOOD00858)

Pulse

Pea

Lentil

Lentils (FooDB: FOOD00098)

Other pulse

Lupine (FooDB: FOOD00104)
White lupine (FooDB: FOOD00403)

Bean

Green lentil (FooDB: FOOD00970)
Pulses (FooDB: FOOD00867)

Gourd

Watermelon (FooDB: FOOD00052)
Muskmelon (FooDB: FOOD00064)
Cucumber (FooDB: FOOD00065)
Cucurbita (FooDB: FOOD00066)
Bitter gourd (FooDB: FOOD00115)
Winter squash (FooDB: FOOD00283)
Butternut squash (FooDB: FOOD00317)
Calabash (FooDB: FOOD00318)
Chayote (FooDB: FOOD00325)
Towel gourd (FooDB: FOOD00492)
Wax gourd (FooDB: FOOD00499)
Tinda (FooDB: FOOD00559)
Horned melon (FooDB: FOOD00761)
Sunburst squash (pattypan squash) (FooDB: FOOD00874)
Green zucchini (FooDB: FOOD00875)
Yellow zucchini (FooDB: FOOD00876)
Japanese pumpkin (FooDB: FOOD00886)
Acorn squash (FooDB: FOOD00972)
Cantaloupe melon (FooDB: FOOD00984)

Coffee and coffee product

Coffee

Arabica coffee (FooDB: FOOD00059)
Robusta coffee (FooDB: FOOD00060)

Soy

Soy bean (FooDB: FOOD00085)

Soy product

Dish

Other dish

Taco shell (FooDB: FOOD00991)
Tostada shell (FooDB: FOOD00992)

Tea

Herbal tea

Hibiscus tea (FooDB: FOOD00723)
Greenthread tea (FooDB: FOOD00820)

Baking good

Wrapper

Wonton wrapper (FooDB: FOOD00818)

Abalone (FooDB: FOOD00279)
Conch (FooDB: FOOD00611)

Cocoa and cocoa product

Cocoa

Cocoa bean (FooDB: FOOD00182)

Process

Naturally occurring process

Biological process

Biochemical pathway

Metabolic pathway

Terpenoid Backbone Biosynthesis (PathBank: SMP0121210)

Role

Not Available

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.0051 g/L	ALOGPS
logP	1.48	ALOGPS
logP	2.17	ChemAxon
logS	-4.8	ALOGPS
pKa (Strongest Acidic)	2.56	ChemAxon
pKa (Strongest Basic)	9.14	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	63.32 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	99.65 m³·mol⁻¹	ChemAxon
Polarizability	39.43 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	180.552	31661259
DarkChem	[M-H]-	179.662	31661259
DeepCCS	[M+H]+	182.684	30932474
DeepCCS	[M-H]-	180.326	30932474
DeepCCS	[M-2H]-	213.212	30932474
DeepCCS	[M+Na]+	188.777	30932474
AllCCS	[M+H]+	187.3	32859911
AllCCS	[M+H-H2O]+	184.6	32859911
AllCCS	[M+NH4]+	189.7	32859911
AllCCS	[M+Na]+	190.5	32859911
AllCCS	[M-H]-	184.7	32859911
AllCCS	[M+Na-2H]-	185.9	32859911
AllCCS	[M+HCOO]-	187.4	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	6.79 minutes	32390414
Predicted by Siyang on May 30, 2022	13.9101 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	3.27 minutes	32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid	54.5 seconds	40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	2646.7 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	258.5 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	160.9 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	167.0 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	94.6 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	483.0 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	501.7 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	131.2 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1179.5 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	503.7 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1045.6 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	393.0 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	315.3 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	294.3 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	298.9 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.0 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Farnesylcysteine	N[C@@H](CSC\C=C(/C)CC\C=C(/C)CCC=C(C)C)C(O)=O	3742.7	Standard polar	33892256
Farnesylcysteine	N[C@@H](CSC\C=C(/C)CC\C=C(/C)CCC=C(C)C)C(O)=O	2422.5	Standard non polar	33892256
Farnesylcysteine	N[C@@H](CSC\C=C(/C)CC\C=C(/C)CCC=C(C)C)C(O)=O	2622.3	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Farnesylcysteine,1TMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@H](N)C(=O)O[Si](C)(C)C	2515.0	Semi standard non polar	33892256
Farnesylcysteine,1TMS,isomer #2	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@H](N[Si](C)(C)C)C(=O)O	2581.4	Semi standard non polar	33892256
Farnesylcysteine,2TMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@H](N[Si](C)(C)C)C(=O)O[Si](C)(C)C	2558.6	Semi standard non polar	33892256
Farnesylcysteine,2TMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@H](N[Si](C)(C)C)C(=O)O[Si](C)(C)C	2507.9	Standard non polar	33892256
Farnesylcysteine,2TMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@H](N[Si](C)(C)C)C(=O)O[Si](C)(C)C	2950.6	Standard polar	33892256
Farnesylcysteine,2TMS,isomer #2	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@@H](C(=O)O)N([Si](C)(C)C)[Si](C)(C)C	2697.5	Semi standard non polar	33892256
Farnesylcysteine,2TMS,isomer #2	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@@H](C(=O)O)N([Si](C)(C)C)[Si](C)(C)C	2606.7	Standard non polar	33892256
Farnesylcysteine,2TMS,isomer #2	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@@H](C(=O)O)N([Si](C)(C)C)[Si](C)(C)C	3115.6	Standard polar	33892256
Farnesylcysteine,3TMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@@H](C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2651.9	Semi standard non polar	33892256
Farnesylcysteine,3TMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@@H](C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2607.0	Standard non polar	33892256
Farnesylcysteine,3TMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@@H](C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C	2753.7	Standard polar	33892256
Farnesylcysteine,1TBDMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@H](N)C(=O)O[Si](C)(C)C(C)(C)C	2755.0	Semi standard non polar	33892256
Farnesylcysteine,1TBDMS,isomer #2	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@H](N[Si](C)(C)C(C)(C)C)C(=O)O	2796.6	Semi standard non polar	33892256
Farnesylcysteine,2TBDMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@H](N[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	2981.5	Semi standard non polar	33892256
Farnesylcysteine,2TBDMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@H](N[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	2895.1	Standard non polar	33892256
Farnesylcysteine,2TBDMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@H](N[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C	3071.8	Standard polar	33892256
Farnesylcysteine,2TBDMS,isomer #2	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@@H](C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3134.1	Semi standard non polar	33892256
Farnesylcysteine,2TBDMS,isomer #2	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@@H](C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2942.5	Standard non polar	33892256
Farnesylcysteine,2TBDMS,isomer #2	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@@H](C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3181.1	Standard polar	33892256
Farnesylcysteine,3TBDMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3370.4	Semi standard non polar	33892256
Farnesylcysteine,3TBDMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	3118.5	Standard non polar	33892256
Farnesylcysteine,3TBDMS,isomer #1	CC(C)=CCC/C(C)=C/CC/C(C)=C/CSC[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2965.1	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Farnesylcysteine GC-MS (Non-derivatized) - 70eV, Positive	splash10-00mx-9751000000-c75df345d8656012bdf0	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Farnesylcysteine GC-MS (1 TMS) - 70eV, Positive	splash10-05aa-8954000000-cb16d7122a6e7b9bef6c	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Farnesylcysteine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Farnesylcysteine 10V, Positive-QTOF	splash10-0a7i-5396000000-851334288f8263d03d23	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Farnesylcysteine 20V, Positive-QTOF	splash10-00dr-9860000000-dba878d9fc5362b67195	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Farnesylcysteine 40V, Positive-QTOF	splash10-0adl-9510000000-bd3c119811a4e2799abe	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Farnesylcysteine 10V, Negative-QTOF	splash10-00dr-1659000000-855d9d7f127560943e3d	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Farnesylcysteine 20V, Negative-QTOF	splash10-0079-4791000000-842def471e9561591a94	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Farnesylcysteine 40V, Negative-QTOF	splash10-0fer-9210000000-618508fb705b5020cbb6	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Farnesylcysteine 10V, Positive-QTOF	splash10-0aba-1951000000-c167818276c3885878f5	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Farnesylcysteine 20V, Positive-QTOF	splash10-0ab9-2910000000-002b04adc9b951f37f54	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Farnesylcysteine 40V, Positive-QTOF	splash10-0c29-9410000000-00bddc91238723c07f72	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Farnesylcysteine 10V, Negative-QTOF	splash10-0079-1193000000-d24d7910416af3a09863	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Farnesylcysteine 20V, Negative-QTOF	splash10-001r-9060000000-023ebf01c668a96e1673	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Farnesylcysteine 40V, Negative-QTOF	splash10-001i-9110000000-d96ba181641b84daf905	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Membrane (predicted from logP)

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB028328

KNApSAcK ID

Not Available

Chemspider ID

4942854

KEGG Compound ID

C19691

BioCyc ID

CPD-12581

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6438372

PDB ID

Not Available

ChEBI ID

62141

Food Biomarker Ontology

Not Available

VMH ID

M01805

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Maes M, Mihaylova I, Leunis JC: Chronic fatigue syndrome is accompanied by an IgM-related immune response directed against neopitopes formed by oxidative or nitrosative damage to lipids and proteins. Neuro Endocrinol Lett. 2006 Oct;27(5):615-21. [PubMed:17159817 ]
Lamango NS, Charlton CG: Farnesyl-L-cysteine analogs block SAM-induced Parkinson's disease-like symptoms in rats. Pharmacol Biochem Behav. 2000 Aug;66(4):841-9. [PubMed:10973524 ]
Havel CM, Fisher P, Watson JA: Isopentenoid synthesis in embryonic Drosophila cells: prenylated protein profile and prenyl group usage. Arch Biochem Biophys. 1992 Jun;295(2):410-20. [PubMed:1586169 ]
Aharonson Z, Gana-Weisz M, Varsano T, Haklai R, Marciano D, Kloog Y: Stringent structural requirements for anti-Ras activity of S-prenyl analogues. Biochim Biophys Acta. 1998 Feb 27;1406(1):40-50. [PubMed:9545527 ]
Elad G, Paz A, Haklai R, Marciano D, Cox A, Kloog Y: Targeting of K-Ras 4B by S-trans,trans-farnesyl thiosalicylic acid. Biochim Biophys Acta. 1999 Dec 9;1452(3):228-42. [PubMed:10590312 ]
Volker C, Miller RA, McCleary WR, Rao A, Poenie M, Backer JM, Stock JB: Effects of farnesylcysteine analogs on protein carboxyl methylation and signal transduction. J Biol Chem. 1991 Nov 15;266(32):21515-22. [PubMed:1939182 ]
Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Enzymes

Enzyme Details

1. Prenylcysteine oxidase 1

General function:: Involved in oxidoreductase activity
Specific function:: Involved in the degradation of prenylated proteins. Cleaves the thioether bond of prenyl-L-cysteines, such as farnesylcysteine and geranylgeranylcysteine.
Gene Name:: PCYOX1
Uniprot ID:: Q9UHG3
Molecular weight:: 56639.66

Reactions

Farnesylcysteine + Oxygen + Water → 2-trans,6-trans-Farnesal + L-Cysteine + Hydrogen peroxide	details

Showing metabocard for Farnesylcysteine (HMDB0011627)

MOL for HMDB0011627 (Farnesylcysteine)

3D MOL for HMDB0011627 (Farnesylcysteine)

3D SDF for HMDB0011627 (Farnesylcysteine)

3D-SDF for HMDB0011627 (Farnesylcysteine)

PDB for HMDB0011627 (Farnesylcysteine)

3D PDB for HMDB0011627 (Farnesylcysteine)

SMILES for HMDB0011627 (Farnesylcysteine)

INCHI for HMDB0011627 (Farnesylcysteine)

Structure for HMDB0011627 (Farnesylcysteine)

3D Structure for HMDB0011627 (Farnesylcysteine)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra

Enzymes

Reactions