| Record Information |
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| Version | 5.0 |
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| Status | Detected but not Quantified |
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| Creation Date | 2009-03-02 17:03:43 UTC |
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| Update Date | 2023-02-21 17:17:34 UTC |
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| HMDB ID | HMDB0011727 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | Bicine |
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| Description | Bicine, also known as bicine buffer, belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon). Bicine has been detected, but not quantified in, a few different foods, such as anatidaes (Anatidae), chickens (Gallus gallus), and domestic pigs (Sus scrofa domestica). This could make bicine a potential biomarker for the consumption of these foods. Based on a literature review a significant number of articles have been published on Bicine. |
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| Structure | InChI=1S/C6H13NO4/c8-3-1-7(2-4-9)5-6(10)11/h8-9H,1-5H2,(H,10,11) |
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| Synonyms | | Value | Source |
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| Bicine buffer | ChEBI | | Bicene | HMDB | | Bis(2-hydroxyethyl)glycine | HMDB | | Diethanol glycine | HMDB | | Diethylolglycine | HMDB | | Dihydroxyethylglycine | HMDB | | N,N-(2-Dihydroxyethyl)glycine | HMDB | | N,N-(2-Hydroxyethyl)glycine | HMDB | | N,N-Bis(2-hydroxyethyl)-glycine | HMDB | | N,N-Bis(2-hydroxyethyl)glycine | HMDB | | N,N-Bis(2-hydroxyethyl)glycine] | HMDB | | N,N-Bis(beta-hydroxyethyl)glycine | HMDB | | N,N-Bis(hydroxyethyl)glycine | HMDB | | N,N-Di(2-hydroxyethyl)glycine | HMDB | | N,N-Dihydroxyethyl glycine | HMDB | | N,N-Dihydroxyethylglycine | HMDB | | N,N-Bis(2-hydroxyethyl)glycine, monosodium salt | MeSH, HMDB | | N,N-Bis(2-hydroxyethyl)glycine, sodium salt | MeSH, HMDB | | [Bis(2-hydroxyethyl)ammonio]acetic acid | Generator, HMDB | | BICINE | MeSH |
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| Chemical Formula | C6H13NO4 |
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| Average Molecular Weight | 163.1717 |
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| Monoisotopic Molecular Weight | 163.084457909 |
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| IUPAC Name | 2-[bis(2-hydroxyethyl)amino]acetic acid |
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| Traditional Name | bicine |
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| CAS Registry Number | 150-25-4 |
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| SMILES | OCCN(CCO)CC(O)=O |
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| InChI Identifier | InChI=1S/C6H13NO4/c8-3-1-7(2-4-9)5-6(10)11/h8-9H,1-5H2,(H,10,11) |
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| InChI Key | FSVCELGFZIQNCK-UHFFFAOYSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon). |
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| Kingdom | Organic compounds |
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| Super Class | Organic acids and derivatives |
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| Class | Carboxylic acids and derivatives |
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| Sub Class | Amino acids, peptides, and analogues |
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| Direct Parent | Alpha amino acids |
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| Alternative Parents | |
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| Substituents | - Alpha-amino acid
- 1,2-aminoalcohol
- Amino acid
- Tertiary aliphatic amine
- Tertiary amine
- Alkanolamine
- Carboxylic acid
- Monocarboxylic acid or derivatives
- Organic nitrogen compound
- Primary alcohol
- Organooxygen compound
- Organonitrogen compound
- Hydrocarbon derivative
- Organic oxide
- Carbonyl group
- Amine
- Organopnictogen compound
- Organic oxygen compound
- Alcohol
- Aliphatic acyclic compound
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| Molecular Framework | Aliphatic acyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | 351500 mg/L @ 25 °C (est) | The Good Scents Company Information System | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 0.91 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 9.7474 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 8.15 minutes | 32390414 | | AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid | 392.6 seconds | 40023050 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 448.8 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 301.9 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 44.6 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 180.0 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 50.5 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 288.7 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 232.9 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 865.8 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 627.8 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 47.4 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 740.2 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 185.7 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 260.5 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 687.9 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 451.6 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 383.3 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| Bicine,1TMS,isomer #1 | C[Si](C)(C)OCCN(CCO)CC(=O)O | 1599.0 | Semi standard non polar | 33892256 | | Bicine,1TMS,isomer #2 | C[Si](C)(C)OC(=O)CN(CCO)CCO | 1555.6 | Semi standard non polar | 33892256 | | Bicine,2TMS,isomer #1 | C[Si](C)(C)OCCN(CCO[Si](C)(C)C)CC(=O)O | 1673.4 | Semi standard non polar | 33892256 | | Bicine,2TMS,isomer #2 | C[Si](C)(C)OCCN(CCO)CC(=O)O[Si](C)(C)C | 1625.5 | Semi standard non polar | 33892256 | | Bicine,3TMS,isomer #1 | C[Si](C)(C)OCCN(CCO[Si](C)(C)C)CC(=O)O[Si](C)(C)C | 1712.7 | Semi standard non polar | 33892256 | | Bicine,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCCN(CCO)CC(=O)O | 1859.1 | Semi standard non polar | 33892256 | | Bicine,1TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)CN(CCO)CCO | 1785.8 | Semi standard non polar | 33892256 | | Bicine,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCCN(CCO[Si](C)(C)C(C)(C)C)CC(=O)O | 2181.9 | Semi standard non polar | 33892256 | | Bicine,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OCCN(CCO)CC(=O)O[Si](C)(C)C(C)(C)C | 2088.2 | Semi standard non polar | 33892256 | | Bicine,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCCN(CCO[Si](C)(C)C(C)(C)C)CC(=O)O[Si](C)(C)C(C)(C)C | 2390.1 | Semi standard non polar | 33892256 |
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| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Experimental GC-MS | GC-MS Spectrum - Bicine EI-B (Non-derivatized) | splash10-004i-0590000000-0b4a6e303ad0b7aa8811 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | | Experimental GC-MS | GC-MS Spectrum - Bicine GC-EI-TOF (Non-derivatized) | splash10-0fb9-0950000000-13cea6f57c5544417311 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | | Experimental GC-MS | GC-MS Spectrum - Bicine EI-B (Non-derivatized) | splash10-004i-0590000000-0b4a6e303ad0b7aa8811 | 2018-05-18 | HMDB team, MONA, MassBank | View Spectrum | | Experimental GC-MS | GC-MS Spectrum - Bicine GC-EI-TOF (Non-derivatized) | splash10-0fb9-0950000000-13cea6f57c5544417311 | 2018-05-18 | HMDB team, MONA, MassBank | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - Bicine GC-MS (Non-derivatized) - 70eV, Positive | splash10-000y-9600000000-86746b520966dd484805 | 2017-08-28 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - Bicine GC-MS (3 TMS) - 70eV, Positive | splash10-0200-8493000000-3d4f043062d0b8998353 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - Bicine GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Experimental LC-MS/MS | LC-MS/MS Spectrum - Bicine 20V, Negative-QTOF | splash10-0532-9300000000-c414ce9e031fa10ef448 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - Bicine 10V, Negative-QTOF | splash10-03di-1900000000-a2a8a71f1aaaa7d9405b | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - Bicine 20V, Positive-QTOF | splash10-066r-9600000000-37e2b06b6659474065bf | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - Bicine 10V, Positive-QTOF | splash10-014i-1900000000-b829ead218a786ca2741 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - Bicine 40V, Positive-QTOF | splash10-0a4j-9000000000-a3609ecf6bceb64470b3 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - Bicine 40V, Negative-QTOF | splash10-0a4i-9000000000-e8af1a0dec1ad3f74732 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Bicine 10V, Positive-QTOF | splash10-03xr-0900000000-385f63e584e8574b09e6 | 2017-07-26 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Bicine 20V, Positive-QTOF | splash10-014i-3900000000-2d0c20b213970b82d046 | 2017-07-26 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Bicine 40V, Positive-QTOF | splash10-0fk9-9300000000-588050ec6a52f9fe8805 | 2017-07-26 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Bicine 10V, Negative-QTOF | splash10-03di-0900000000-cc0d32efa68c17b83343 | 2017-07-26 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Bicine 20V, Negative-QTOF | splash10-03di-1900000000-fad830e28914ea85bdbf | 2017-07-26 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Bicine 40V, Negative-QTOF | splash10-0006-9300000000-db7eee00ece01cf87949 | 2017-07-26 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Bicine 10V, Negative-QTOF | splash10-03fu-0900000000-8ed63f160e4db29ab5c2 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Bicine 20V, Negative-QTOF | splash10-03di-0900000000-74e195c2ad7f60dbae15 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Bicine 40V, Negative-QTOF | splash10-0006-9000000000-dc89b1df42cb0d7caf8d | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Bicine 10V, Positive-QTOF | splash10-03xr-0900000000-45e73dc2537b1418a63d | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Bicine 20V, Positive-QTOF | splash10-0v6s-2900000000-1019e45817f15fa6066a | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Bicine 40V, Positive-QTOF | splash10-006t-9000000000-5f4427e1794afe720f19 | 2021-09-24 | Wishart Lab | View Spectrum |
NMR Spectra| Spectrum Type | Description | Deposition Date | Source | View |
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| Predicted 1D NMR | 13C NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum |
IR Spectra| Spectrum Type | Description | Deposition Date | Source | View |
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| Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-) | 2023-02-03 | FELIX lab | View Spectrum | | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+) | 2023-02-03 | FELIX lab | View Spectrum | | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+) | 2023-02-03 | FELIX lab | View Spectrum |
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| General References | - Sreekumar A, Poisson LM, Rajendiran TM, Khan AP, Cao Q, Yu J, Laxman B, Mehra R, Lonigro RJ, Li Y, Nyati MK, Ahsan A, Kalyana-Sundaram S, Han B, Cao X, Byun J, Omenn GS, Ghosh D, Pennathur S, Alexander DC, Berger A, Shuster JR, Wei JT, Varambally S, Beecher C, Chinnaiyan AM: Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression. Nature. 2009 Feb 12;457(7231):910-4. doi: 10.1038/nature07762. [PubMed:19212411 ]
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