Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-06 15:00:19 UTC
Update Date2021-09-14 15:00:47 UTC
HMDB IDHMDB0013883
Secondary Accession Numbers
  • HMDB13883
Metabolite Identification
Common NameR-6-Hydroxywarfarin
DescriptionR-6-Hydroxywarfarin belongs to the class of organic compounds known as homoisoflavones. These are homoisoflavonoids with a structure based on the chromone system. Chromone is a bicyclic compound consisting of a 1-benzopyran, which bears a ketone group at the 4-position. Based on a literature review very few articles have been published on R-6-Hydroxywarfarin.
Structure
Data?1582753151
SynonymsNot Available
Chemical FormulaC19H16O5
Average Molecular Weight324.3273
Monoisotopic Molecular Weight324.099773622
IUPAC Name2,6-dihydroxy-3-[(1R)-3-oxo-1-phenylbutyl]-4H-chromen-4-one
Traditional Name2,6-dihydroxy-3-[(1R)-3-oxo-1-phenylbutyl]chromen-4-one
CAS Registry NumberNot Available
SMILES
[H][C@@](CC(C)=O)(C1=CC=CC=C1)C1=C(O)OC2=CC=C(O)C=C2C1=O
InChI Identifier
InChI=1S/C19H16O5/c1-11(20)9-14(12-5-3-2-4-6-12)17-18(22)15-10-13(21)7-8-16(15)24-19(17)23/h2-8,10,14,21,23H,9H2,1H3/t14-/m1/s1
InChI KeyJFCOGWFGPAUYNK-CQSZACIVSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as homoisoflavones. These are homoisoflavonoids with a structure based on the chromone system. Chromone is a bicyclic compound consisting of a 1-benzopyran, which bears a ketone group at the 4-position.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassHomoisoflavonoids
Sub ClassHomoisoflavones
Direct ParentHomoisoflavones
Alternative Parents
Substituents
  • Homoisoflavone
  • Chromone
  • Coumarin
  • Benzopyran
  • 1-benzopyran
  • 1-hydroxy-2-unsubstituted benzenoid
  • Pyranone
  • Monocyclic benzene moiety
  • Pyran
  • Benzenoid
  • Heteroaromatic compound
  • Vinylogous acid
  • Ketone
  • Oxacycle
  • Organoheterocyclic compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Carbonyl group
  • Organic oxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.034 g/LALOGPS
logP2.72ALOGPS
logP3.22ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)7.75ChemAxon
pKa (Strongest Basic)-5.5ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area83.83 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity97.97 m³·mol⁻¹ChemAxon
Polarizability32.95 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+171.85130932474
DeepCCS[M-H]-169.49330932474
DeepCCS[M-2H]-203.22930932474
DeepCCS[M+Na]+178.45730932474
AllCCS[M+H]+175.432859911
AllCCS[M+H-H2O]+172.032859911
AllCCS[M+NH4]+178.632859911
AllCCS[M+Na]+179.532859911
AllCCS[M-H]-178.732859911
AllCCS[M+Na-2H]-178.232859911
AllCCS[M+HCOO]-177.832859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
R-6-Hydroxywarfarin[H][C@@](CC(C)=O)(C1=CC=CC=C1)C1=C(O)OC2=CC=C(O)C=C2C1=O4159.4Standard polar33892256
R-6-Hydroxywarfarin[H][C@@](CC(C)=O)(C1=CC=CC=C1)C1=C(O)OC2=CC=C(O)C=C2C1=O2789.2Standard non polar33892256
R-6-Hydroxywarfarin[H][C@@](CC(C)=O)(C1=CC=CC=C1)C1=C(O)OC2=CC=C(O)C=C2C1=O3022.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
R-6-Hydroxywarfarin,1TMS,isomer #1CC(=O)C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C)OC2=CC=C(O)C=C2C1=O2827.8Semi standard non polar33892256
R-6-Hydroxywarfarin,1TMS,isomer #2CC(=O)C[C@H](C1=CC=CC=C1)C1=C(O)OC2=CC=C(O[Si](C)(C)C)C=C2C1=O2763.5Semi standard non polar33892256
R-6-Hydroxywarfarin,1TMS,isomer #3CC(=C[C@H](C1=CC=CC=C1)C1=C(O)OC2=CC=C(O)C=C2C1=O)O[Si](C)(C)C2924.9Semi standard non polar33892256
R-6-Hydroxywarfarin,1TMS,isomer #4C=C(C[C@H](C1=CC=CC=C1)C1=C(O)OC2=CC=C(O)C=C2C1=O)O[Si](C)(C)C2861.4Semi standard non polar33892256
R-6-Hydroxywarfarin,2TMS,isomer #1CC(=O)C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C)OC2=CC=C(O[Si](C)(C)C)C=C2C1=O2837.5Semi standard non polar33892256
R-6-Hydroxywarfarin,2TMS,isomer #2CC(=C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C)OC2=CC=C(O)C=C2C1=O)O[Si](C)(C)C2902.7Semi standard non polar33892256
R-6-Hydroxywarfarin,2TMS,isomer #3C=C(C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C)OC2=CC=C(O)C=C2C1=O)O[Si](C)(C)C2847.3Semi standard non polar33892256
R-6-Hydroxywarfarin,2TMS,isomer #4CC(=C[C@H](C1=CC=CC=C1)C1=C(O)OC2=CC=C(O[Si](C)(C)C)C=C2C1=O)O[Si](C)(C)C2877.2Semi standard non polar33892256
R-6-Hydroxywarfarin,2TMS,isomer #5C=C(C[C@H](C1=CC=CC=C1)C1=C(O)OC2=CC=C(O[Si](C)(C)C)C=C2C1=O)O[Si](C)(C)C2843.5Semi standard non polar33892256
R-6-Hydroxywarfarin,3TMS,isomer #1CC(=C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C)OC2=CC=C(O[Si](C)(C)C)C=C2C1=O)O[Si](C)(C)C2933.5Semi standard non polar33892256
R-6-Hydroxywarfarin,3TMS,isomer #1CC(=C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C)OC2=CC=C(O[Si](C)(C)C)C=C2C1=O)O[Si](C)(C)C3004.0Standard non polar33892256
R-6-Hydroxywarfarin,3TMS,isomer #1CC(=C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C)OC2=CC=C(O[Si](C)(C)C)C=C2C1=O)O[Si](C)(C)C3255.0Standard polar33892256
R-6-Hydroxywarfarin,3TMS,isomer #2C=C(C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C)OC2=CC=C(O[Si](C)(C)C)C=C2C1=O)O[Si](C)(C)C2873.2Semi standard non polar33892256
R-6-Hydroxywarfarin,3TMS,isomer #2C=C(C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C)OC2=CC=C(O[Si](C)(C)C)C=C2C1=O)O[Si](C)(C)C2834.2Standard non polar33892256
R-6-Hydroxywarfarin,3TMS,isomer #2C=C(C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C)OC2=CC=C(O[Si](C)(C)C)C=C2C1=O)O[Si](C)(C)C3254.2Standard polar33892256
R-6-Hydroxywarfarin,1TBDMS,isomer #1CC(=O)C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C(C)(C)C)OC2=CC=C(O)C=C2C1=O3066.5Semi standard non polar33892256
R-6-Hydroxywarfarin,1TBDMS,isomer #2CC(=O)C[C@H](C1=CC=CC=C1)C1=C(O)OC2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2C1=O3029.3Semi standard non polar33892256
R-6-Hydroxywarfarin,1TBDMS,isomer #3CC(=C[C@H](C1=CC=CC=C1)C1=C(O)OC2=CC=C(O)C=C2C1=O)O[Si](C)(C)C(C)(C)C3190.3Semi standard non polar33892256
R-6-Hydroxywarfarin,1TBDMS,isomer #4C=C(C[C@H](C1=CC=CC=C1)C1=C(O)OC2=CC=C(O)C=C2C1=O)O[Si](C)(C)C(C)(C)C3135.3Semi standard non polar33892256
R-6-Hydroxywarfarin,2TBDMS,isomer #1CC(=O)C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C(C)(C)C)OC2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2C1=O3259.5Semi standard non polar33892256
R-6-Hydroxywarfarin,2TBDMS,isomer #2CC(=C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C(C)(C)C)OC2=CC=C(O)C=C2C1=O)O[Si](C)(C)C(C)(C)C3398.4Semi standard non polar33892256
R-6-Hydroxywarfarin,2TBDMS,isomer #3C=C(C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C(C)(C)C)OC2=CC=C(O)C=C2C1=O)O[Si](C)(C)C(C)(C)C3295.1Semi standard non polar33892256
R-6-Hydroxywarfarin,2TBDMS,isomer #4CC(=C[C@H](C1=CC=CC=C1)C1=C(O)OC2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2C1=O)O[Si](C)(C)C(C)(C)C3409.9Semi standard non polar33892256
R-6-Hydroxywarfarin,2TBDMS,isomer #5C=C(C[C@H](C1=CC=CC=C1)C1=C(O)OC2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2C1=O)O[Si](C)(C)C(C)(C)C3340.7Semi standard non polar33892256
R-6-Hydroxywarfarin,3TBDMS,isomer #1CC(=C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C(C)(C)C)OC2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2C1=O)O[Si](C)(C)C(C)(C)C3570.3Semi standard non polar33892256
R-6-Hydroxywarfarin,3TBDMS,isomer #1CC(=C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C(C)(C)C)OC2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2C1=O)O[Si](C)(C)C(C)(C)C3582.9Standard non polar33892256
R-6-Hydroxywarfarin,3TBDMS,isomer #1CC(=C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C(C)(C)C)OC2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2C1=O)O[Si](C)(C)C(C)(C)C3516.1Standard polar33892256
R-6-Hydroxywarfarin,3TBDMS,isomer #2C=C(C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C(C)(C)C)OC2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2C1=O)O[Si](C)(C)C(C)(C)C3471.3Semi standard non polar33892256
R-6-Hydroxywarfarin,3TBDMS,isomer #2C=C(C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C(C)(C)C)OC2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2C1=O)O[Si](C)(C)C(C)(C)C3391.7Standard non polar33892256
R-6-Hydroxywarfarin,3TBDMS,isomer #2C=C(C[C@H](C1=CC=CC=C1)C1=C(O[Si](C)(C)C(C)(C)C)OC2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2C1=O)O[Si](C)(C)C(C)(C)C3528.7Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - R-6-Hydroxywarfarin GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-8692000000-71790d12b9852db68acf2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - R-6-Hydroxywarfarin GC-MS (2 TMS) - 70eV, Positivesplash10-0zmr-6839500000-289f80d1302f557e6b4b2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - R-6-Hydroxywarfarin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - R-6-Hydroxywarfarin 10V, Positive-QTOFsplash10-056r-0029000000-0c31e2ee084e343027132016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - R-6-Hydroxywarfarin 20V, Positive-QTOFsplash10-0a6r-0279000000-30bc24ec970dd82f45442016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - R-6-Hydroxywarfarin 40V, Positive-QTOFsplash10-00kr-1490000000-be0e0c09b5fe04ee4d7b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - R-6-Hydroxywarfarin 10V, Negative-QTOFsplash10-00fr-1169000000-2e0685d4491c7644c05c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - R-6-Hydroxywarfarin 20V, Negative-QTOFsplash10-004i-3596000000-6a9206b094dbf74223c52016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - R-6-Hydroxywarfarin 40V, Negative-QTOFsplash10-0bvl-8690000000-f3a39c08726274a625c52016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - R-6-Hydroxywarfarin 10V, Negative-QTOFsplash10-00di-0309000000-60b14d5b0a019f92e5c72021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - R-6-Hydroxywarfarin 20V, Negative-QTOFsplash10-004i-2934000000-16bac68e7604aff5db432021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - R-6-Hydroxywarfarin 40V, Negative-QTOFsplash10-0pbc-8961000000-27c3cb3b22dbc449e50e2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - R-6-Hydroxywarfarin 10V, Positive-QTOFsplash10-004i-0829000000-8246a6fbedba02caddc12021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - R-6-Hydroxywarfarin 20V, Positive-QTOFsplash10-004i-0951000000-94515aed645edace7aad2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - R-6-Hydroxywarfarin 40V, Positive-QTOFsplash10-000i-1941000000-30290d01602decce74d32021-09-23Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
Biospecimen Locations
  • Blood
  • Urine
Tissue Locations
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableTaking drug identified by DrugBank entry details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableTaking drug identified by DrugBank entry details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID30776721
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound13427217
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available

Enzymes

General function:
Involved in transferase activity, transferring hexosyl groups
Specific function:
UDPGT is of major importance in the conjugation and subsequent elimination of potentially toxic xenobiotics and endogenous compounds. This isoform glucuronidates bilirubin IX-alpha to form both the IX-alpha-C8 and IX-alpha-C12 monoconjugates and diconjugate. Is also able to catalyze the glucuronidation of 17beta-estradiol, 17alpha-ethinylestradiol, 1-hydroxypyrene, 4-methylumbelliferone, 1-naphthol, paranitrophenol, scopoletin, and umbelliferone.
Gene Name:
UGT1A1
Uniprot ID:
P22309
Molecular weight:
59590.91
Reactions
R-6-Hydroxywarfarin → 3,4,5-trihydroxy-6-({2-hydroxy-4-oxo-3-[(1R)-3-oxo-1-phenylbutyl]-4H-chromen-6-yl}oxy)oxane-2-carboxylic aciddetails
R-6-Hydroxywarfarin → 3,4,5-trihydroxy-6-({6-hydroxy-4-oxo-3-[(1R)-3-oxo-1-phenylbutyl]-4H-chromen-2-yl}oxy)oxane-2-carboxylic aciddetails