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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2012-09-08 15:00:07 UTC
Update Date2020-11-09 23:29:33 UTC
HMDB IDHMDB0029218
Secondary Accession Numbers
  • HMDB29218
Metabolite Identification
Common NameUrolithin C
DescriptionUrolithin C, also known as urolithin-C, belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one). Based on a literature review very few articles have been published on Urolithin C.
Structure
Data?1582753388
Synonyms
ValueSource
Urolithin-CHMDB
3,8,9-trihydroxy-6H-benzo[c]chromen-6-oneHMDB
3,8,9-trihydroxy-urolithinHMDB
TrihydroxyurolithinHMDB
Chemical FormulaC13H8O5
Average Molecular Weight244.1996
Monoisotopic Molecular Weight244.037173366
IUPAC Name3,8,9-trihydroxy-6H-benzo[c]chromen-6-one
Traditional Name3,8,9-trihydroxybenzo[c]chromen-6-one
CAS Registry NumberNot Available
SMILES
OC1=CC2=C(C=C1)C1=C(C=C(O)C(O)=C1)C(=O)O2
InChI Identifier
InChI=1S/C13H8O5/c14-6-1-2-7-8-4-10(15)11(16)5-9(8)13(17)18-12(7)3-6/h1-5,14-16H
InChI KeyHHXMEXZVPJFAIJ-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one).
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassCoumarins and derivatives
Sub ClassNot Available
Direct ParentCoumarins and derivatives
Alternative Parents
Substituents
  • Coumarin
  • Isocoumarin
  • Benzopyran
  • 2-benzopyran
  • 1-benzopyran
  • 1-hydroxy-2-unsubstituted benzenoid
  • Pyranone
  • Pyran
  • Benzenoid
  • Heteroaromatic compound
  • Lactone
  • Oxacycle
  • Polyol
  • Organoheterocyclic compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.39 g/LALOGPS
logP2.26ALOGPS
logP2.01ChemAxon
logS-2.8ALOGPS
pKa (Strongest Acidic)7.27ChemAxon
pKa (Strongest Basic)-6.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area86.99 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity62.88 m³·mol⁻¹ChemAxon
Polarizability23.21 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+154.39731661259
DarkChem[M-H]-153.46831661259
DeepCCS[M+H]+157.81930932474
DeepCCS[M-H]-155.46130932474
DeepCCS[M-2H]-188.41230932474
DeepCCS[M+Na]+163.91230932474
AllCCS[M+H]+152.832859911
AllCCS[M+H-H2O]+148.732859911
AllCCS[M+NH4]+156.532859911
AllCCS[M+Na]+157.632859911
AllCCS[M-H]-153.132859911
AllCCS[M+Na-2H]-152.432859911
AllCCS[M+HCOO]-151.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Urolithin COC1=CC2=C(C=C1)C1=C(C=C(O)C(O)=C1)C(=O)O23993.5Standard polar33892256
Urolithin COC1=CC2=C(C=C1)C1=C(C=C(O)C(O)=C1)C(=O)O22642.5Standard non polar33892256
Urolithin COC1=CC2=C(C=C1)C1=C(C=C(O)C(O)=C1)C(=O)O22876.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Urolithin C,1TMS,isomer #1C[Si](C)(C)OC1=CC=C2C(=C1)OC(=O)C1=CC(O)=C(O)C=C122879.9Semi standard non polar33892256
Urolithin C,1TMS,isomer #2C[Si](C)(C)OC1=CC2=C(C=C1O)C1=CC=C(O)C=C1OC2=O2837.7Semi standard non polar33892256
Urolithin C,1TMS,isomer #3C[Si](C)(C)OC1=CC2=C(C=C1O)C(=O)OC1=CC(O)=CC=C122836.0Semi standard non polar33892256
Urolithin C,2TMS,isomer #1C[Si](C)(C)OC1=CC=C2C(=C1)OC(=O)C1=CC(O[Si](C)(C)C)=C(O)C=C122903.9Semi standard non polar33892256
Urolithin C,2TMS,isomer #2C[Si](C)(C)OC1=CC=C2C(=C1)OC(=O)C1=CC(O)=C(O[Si](C)(C)C)C=C122918.6Semi standard non polar33892256
Urolithin C,2TMS,isomer #3C[Si](C)(C)OC1=CC2=C(C=C1O[Si](C)(C)C)C1=CC=C(O)C=C1OC2=O2761.9Semi standard non polar33892256
Urolithin C,3TMS,isomer #1C[Si](C)(C)OC1=CC=C2C(=C1)OC(=O)C1=CC(O[Si](C)(C)C)=C(O[Si](C)(C)C)C=C122821.8Semi standard non polar33892256
Urolithin C,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=CC=C2C(=C1)OC(=O)C1=CC(O)=C(O)C=C123098.7Semi standard non polar33892256
Urolithin C,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1=CC2=C(C=C1O)C1=CC=C(O)C=C1OC2=O3089.5Semi standard non polar33892256
Urolithin C,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC1=CC2=C(C=C1O)C(=O)OC1=CC(O)=CC=C123097.4Semi standard non polar33892256
Urolithin C,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=CC=C2C(=C1)OC(=O)C1=CC(O[Si](C)(C)C(C)(C)C)=C(O)C=C123383.3Semi standard non polar33892256
Urolithin C,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1=CC=C2C(=C1)OC(=O)C1=CC(O)=C(O[Si](C)(C)C(C)(C)C)C=C123397.8Semi standard non polar33892256
Urolithin C,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC1=CC2=C(C=C1O[Si](C)(C)C(C)(C)C)C1=CC=C(O)C=C1OC2=O3280.5Semi standard non polar33892256
Urolithin C,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=CC=C2C(=C1)OC(=O)C1=CC(O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)C=C123563.8Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Urolithin C GC-MS (Non-derivatized) - 70eV, Positivesplash10-0i03-0290000000-049d87f702ddc51f027f2017-07-27Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Urolithin C GC-MS (3 TMS) - 70eV, Positivesplash10-00ds-3009400000-046d41b43ff0f1903b0b2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Urolithin C GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Urolithin C 10V, Positive-QTOFsplash10-0002-0090000000-0246cd4c7b3450303a272017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Urolithin C 20V, Positive-QTOFsplash10-0002-0090000000-e572d704e2966dad84552017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Urolithin C 40V, Positive-QTOFsplash10-0ufr-1490000000-b72d0c5bd8e416f8719e2017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Urolithin C 10V, Negative-QTOFsplash10-0006-0190000000-b89cf854b2eecb6847132017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Urolithin C 20V, Negative-QTOFsplash10-0006-0290000000-32ccba612591f69deb1f2017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Urolithin C 40V, Negative-QTOFsplash10-0002-0930000000-337e57dd699433d0920f2017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Urolithin C 10V, Positive-QTOFsplash10-0002-0090000000-375ead9ffd42ab31b4052021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Urolithin C 20V, Positive-QTOFsplash10-0002-0090000000-375ead9ffd42ab31b4052021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Urolithin C 40V, Positive-QTOFsplash10-1070-0950000000-eb8f61c7ccd3effcfa6b2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Urolithin C 10V, Negative-QTOFsplash10-0006-0090000000-9b916dc13378b55526632021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Urolithin C 20V, Negative-QTOFsplash10-0006-0090000000-8a1163ae126b7105ee1e2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Urolithin C 40V, Negative-QTOFsplash10-03kc-0980000000-9ddc696bbfa9a41e5eaa2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane (predicted from logP)
Biospecimen Locations
  • Blood
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothNormal details
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableConsuming polyphenols described by Phenol-Explorer entry 1040 details
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableConsuming polyphenols described by Phenol-Explorer entry 1040 details
UrineDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothNormal details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableConsuming polyphenols described by Phenol-Explorer entry 1040 details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableConsuming polyphenols described by Phenol-Explorer entry 1040 details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB029963
KNApSAcK IDC00053886
Chemspider ID25941971
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound60198001
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available

Enzymes

General function:
Involved in transferase activity, transferring hexosyl groups
Specific function:
UDPGT is of major importance in the conjugation and subsequent elimination of potentially toxic xenobiotics and endogenous compounds. This isoform glucuronidates bilirubin IX-alpha to form both the IX-alpha-C8 and IX-alpha-C12 monoconjugates and diconjugate. Is also able to catalyze the glucuronidation of 17beta-estradiol, 17alpha-ethinylestradiol, 1-hydroxypyrene, 4-methylumbelliferone, 1-naphthol, paranitrophenol, scopoletin, and umbelliferone.
Gene Name:
UGT1A1
Uniprot ID:
P22309
Molecular weight:
59590.91
Reactions
Urolithin C → 6-({3,8-dihydroxy-6-oxo-6H-benzo[c]chromen-9-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic aciddetails
Urolithin C → 6-({3,9-dihydroxy-6-oxo-6H-benzo[c]chromen-8-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic aciddetails
Urolithin C → Urolithin C 3-glucuronidedetails