Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:30:05 UTC
Update Date2022-03-07 02:52:08 UTC
HMDB IDHMDB0029382
Secondary Accession Numbers
  • HMDB29382
Metabolite Identification
Common NameGenomorphine
DescriptionGenomorphine, also known as heterocodeine or morphine N-oxide, belongs to the class of organic compounds known as morphinans. These are polycyclic compounds with a four-ring skeleton with three condensed six-member rings forming a partially hydrogenated phenanthrene moiety, one of which is aromatic while the two others are alicyclic. Based on a literature review a significant number of articles have been published on Genomorphine.
Structure
Data?1582753411
Synonyms
ValueSource
GenomorphinHMDB
HeterocodeineHMDB
Morphine N-oxideHMDB
Morphine oxideHMDB
Morphine-N-oxideHMDB
Chemical FormulaC17H19NO4
Average Molecular Weight301.3371
Monoisotopic Molecular Weight301.131408101
IUPAC Name10,14-dihydroxy-4-methyl-12-oxa-4λ⁵-azapentacyclo[9.6.1.0¹,¹³.0⁵,¹⁷.0⁷,¹⁸]octadeca-7(18),8,10,15-tetraen-4-one
Traditional Name10,14-dihydroxy-4-methyl-12-oxa-4λ⁵-azapentacyclo[9.6.1.0¹,¹³.0⁵,¹⁷.0⁷,¹⁸]octadeca-7(18),8,10,15-tetraen-4-one
CAS Registry Number639-46-3
SMILES
CN1(=O)CCC23C4OC5=C(O)C=CC(CC1C2C=CC4O)=C35
InChI Identifier
InChI=1S/C17H19NO4/c1-18(21)7-6-17-10-3-5-13(20)16(17)22-15-12(19)4-2-9(14(15)17)8-11(10)18/h2-5,10-11,13,16,19-20H,6-8H2,1H3
InChI KeyAMAPEXTUMXQULJ-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as morphinans. These are polycyclic compounds with a four-ring skeleton with three condensed six-member rings forming a partially hydrogenated phenanthrene moiety, one of which is aromatic while the two others are alicyclic.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassMorphinans
Sub ClassNot Available
Direct ParentMorphinans
Alternative Parents
Substituents
  • Morphinan
  • Phenanthrene
  • Tetralin
  • Coumaran
  • Alkyl aryl ether
  • 1-hydroxy-2-unsubstituted benzenoid
  • Benzenoid
  • Piperidine
  • Trialkyl amine oxide
  • Secondary alcohol
  • N-oxide
  • Ether
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Trisubstituted n-oxide
  • Alcohol
  • Organic zwitterion
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point272 - 273 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.51 g/LALOGPS
logP-0.03ALOGPS
logP0.073ChemAxon
logS-2.8ALOGPS
pKa (Strongest Acidic)9.81ChemAxon
pKa (Strongest Basic)2.75ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area76.57 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity82.17 m³·mol⁻¹ChemAxon
Polarizability30.5 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+168.60131661259
DarkChem[M-H]-165.17631661259
DeepCCS[M-2H]-197.7530932474
DeepCCS[M+Na]+172.97730932474
AllCCS[M+H]+171.332859911
AllCCS[M+H-H2O]+168.032859911
AllCCS[M+NH4]+174.332859911
AllCCS[M+Na]+175.232859911
AllCCS[M-H]-175.632859911
AllCCS[M+Na-2H]-175.032859911
AllCCS[M+HCOO]-174.532859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.2.57 minutes32390414
Predicted by Siyang on May 30, 202210.0205 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20225.02 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1225.4 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid203.3 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid134.2 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid163.0 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid74.6 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid313.6 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid293.7 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)557.2 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid848.5 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid295.3 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1089.8 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid210.4 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid235.7 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate412.4 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA378.2 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water66.0 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
GenomorphineCN1(=O)CCC23C4OC5=C(O)C=CC(CC1C2C=CC4O)=C353819.4Standard polar33892256
GenomorphineCN1(=O)CCC23C4OC5=C(O)C=CC(CC1C2C=CC4O)=C352220.7Standard non polar33892256
GenomorphineCN1(=O)CCC23C4OC5=C(O)C=CC(CC1C2C=CC4O)=C352551.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Genomorphine,1TMS,isomer #1C[N+]1([O-])CCC23C4=C5C=CC(O[Si](C)(C)C)=C4OC2C(O)C=CC3C1C52625.2Semi standard non polar33892256
Genomorphine,1TMS,isomer #2C[N+]1([O-])CCC23C4=C5C=CC(O)=C4OC2C(O[Si](C)(C)C)C=CC3C1C52595.2Semi standard non polar33892256
Genomorphine,2TMS,isomer #1C[N+]1([O-])CCC23C4=C5C=CC(O[Si](C)(C)C)=C4OC2C(O[Si](C)(C)C)C=CC3C1C52629.6Semi standard non polar33892256
Genomorphine,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=CC=C2CC3C4C=CC(O)C5OC1=C2C45CC[N+]3(C)[O-]2900.7Semi standard non polar33892256
Genomorphine,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1C=CC2C3CC4=CC=C(O)C5=C4C2(CC[N+]3(C)[O-])C1O52840.1Semi standard non polar33892256
Genomorphine,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=CC=C2CC3C4C=CC(O[Si](C)(C)C(C)(C)C)C5OC1=C2C45CC[N+]3(C)[O-]3128.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Genomorphine GC-MS (Non-derivatized) - 70eV, Positivesplash10-0pcc-3091000000-22168af88abd6004ec102017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Genomorphine GC-MS (2 TMS) - 70eV, Positivesplash10-00gi-5109600000-83ddd0bb3c6a803507332017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Genomorphine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Genomorphine 10V, Positive-QTOFsplash10-0udi-0029000000-53443eefb3724d6a20f82017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Genomorphine 20V, Positive-QTOFsplash10-0udi-0093000000-80e5135fca639e328d852017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Genomorphine 40V, Positive-QTOFsplash10-0f7d-0390000000-c91aff023c4a2a96ef752017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Genomorphine 10V, Negative-QTOFsplash10-0udi-0009000000-ddb4f06d67be77be239e2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Genomorphine 20V, Negative-QTOFsplash10-0udi-0009000000-e921cb9736277a8287d92017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Genomorphine 40V, Negative-QTOFsplash10-0ufr-5395000000-84ad71f493e5448d04e42017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Genomorphine 10V, Positive-QTOFsplash10-0udi-0009000000-ab6f6c1d45a17ba966cd2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Genomorphine 20V, Positive-QTOFsplash10-0f89-0096000000-13d01af587f3aa2b55f32021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Genomorphine 40V, Positive-QTOFsplash10-0zi0-2093000000-465bb1490118e1ab372d2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Genomorphine 10V, Negative-QTOFsplash10-0udi-0009000000-867b26b8e9b8bd5f92732021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Genomorphine 20V, Negative-QTOFsplash10-0udi-0009000000-867b26b8e9b8bd5f92732021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Genomorphine 40V, Negative-QTOFsplash10-0udi-0009000000-867b26b8e9b8bd5f92732021-09-24Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB000459
KNApSAcK IDC00057481
Chemspider ID4515047
KEGG Compound IDC11786
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkMorphine-N-oxide
METLIN IDNot Available
PubChem Compound4464646
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .