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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:35:31 UTC
Update Date2022-03-07 02:52:28 UTC
HMDB IDHMDB0030221
Secondary Accession Numbers
  • HMDB30221
Metabolite Identification
Common NameBicyclomahanimbicine
DescriptionBicyclomahanimbicine belongs to the class of organic compounds known as carbazoles. Carbazoles are compounds containing a three ring system containing a pyrrole ring fused on either side to a benzene ring. Bicyclomahanimbicine is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, bicyclomahanimbicine has been detected, but not quantified in, herbs and spices. This could make bicyclomahanimbicine a potential biomarker for the consumption of these foods.
Structure
Data?1563861955
Synonyms
ValueSource
1,2,2a,10,10C,11,11a,11b-Octahydro-2a,7,11,11-tetramethyl-3-oxa-10-azacyclobut[3,4]indeno[5,6-a]fluorene, 9ciHMDB
Chemical FormulaC23H25NO
Average Molecular Weight331.4507
Monoisotopic Molecular Weight331.193614427
IUPAC Name8,16,20,20-tetramethyl-15-oxa-4-azahexacyclo[14.4.1.0²,¹⁴.0³,¹¹.0⁵,¹⁰.0¹⁹,²¹]henicosa-2(14),3(11),5(10),6,8,12-hexaene
Traditional Name8,16,20,20-tetramethyl-15-oxa-4-azahexacyclo[14.4.1.0²,¹⁴.0³,¹¹.0⁵,¹⁰.0¹⁹,²¹]henicosa-2(14),3(11),5(10),6,8,12-hexaene
CAS Registry Number28613-80-1
SMILES
CC1=CC2=C(NC3=C2C=CC2=C3C3C4C(CCC4(C)O2)C3(C)C)C=C1
InChI Identifier
InChI=1S/C23H25NO/c1-12-5-7-16-14(11-12)13-6-8-17-18(21(13)24-16)20-19-15(22(20,2)3)9-10-23(19,4)25-17/h5-8,11,15,19-20,24H,9-10H2,1-4H3
InChI KeyYNDNDGLKKJXJED-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as carbazoles. Carbazoles are compounds containing a three ring system containing a pyrrole ring fused on either side to a benzene ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIndoles and derivatives
Sub ClassCarbazoles
Direct ParentCarbazoles
Alternative Parents
Substituents
  • Carbazole
  • Chromane
  • Benzopyran
  • 1-benzopyran
  • Indole
  • Alkyl aryl ether
  • Benzenoid
  • Heteroaromatic compound
  • Pyrrole
  • Ether
  • Oxacycle
  • Azacycle
  • Organooxygen compound
  • Organonitrogen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organopnictogen compound
  • Organic oxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point218 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility2.1e-05 g/LALOGPS
logP5.39ALOGPS
logP5.3ChemAxon
logS-7.2ALOGPS
pKa (Strongest Acidic)15.06ChemAxon
pKa (Strongest Basic)-4.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area25.02 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity100.86 m³·mol⁻¹ChemAxon
Polarizability39.47 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+175.96931661259
DarkChem[M-H]-176.53631661259
DeepCCS[M+H]+194.26330932474
DeepCCS[M-H]-191.90530932474
DeepCCS[M-2H]-226.16330932474
DeepCCS[M+Na]+201.41130932474
AllCCS[M+H]+182.032859911
AllCCS[M+H-H2O]+178.932859911
AllCCS[M+NH4]+184.832859911
AllCCS[M+Na]+185.732859911
AllCCS[M-H]-192.732859911
AllCCS[M+Na-2H]-191.732859911
AllCCS[M+HCOO]-190.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
BicyclomahanimbicineCC1=CC2=C(NC3=C2C=CC2=C3C3C4C(CCC4(C)O2)C3(C)C)C=C13761.6Standard polar33892256
BicyclomahanimbicineCC1=CC2=C(NC3=C2C=CC2=C3C3C4C(CCC4(C)O2)C3(C)C)C=C13024.9Standard non polar33892256
BicyclomahanimbicineCC1=CC2=C(NC3=C2C=CC2=C3C3C4C(CCC4(C)O2)C3(C)C)C=C13014.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Bicyclomahanimbicine,1TMS,isomer #1CC1=CC=C2C(=C1)C1=CC=C3OC4(C)CCC5C4C(C3=C1N2[Si](C)(C)C)C5(C)C3129.8Semi standard non polar33892256
Bicyclomahanimbicine,1TMS,isomer #1CC1=CC=C2C(=C1)C1=CC=C3OC4(C)CCC5C4C(C3=C1N2[Si](C)(C)C)C5(C)C2851.7Standard non polar33892256
Bicyclomahanimbicine,1TBDMS,isomer #1CC1=CC=C2C(=C1)C1=CC=C3OC4(C)CCC5C4C(C3=C1N2[Si](C)(C)C(C)(C)C)C5(C)C3264.0Semi standard non polar33892256
Bicyclomahanimbicine,1TBDMS,isomer #1CC1=CC=C2C(=C1)C1=CC=C3OC4(C)CCC5C4C(C3=C1N2[Si](C)(C)C(C)(C)C)C5(C)C3074.5Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Bicyclomahanimbicine GC-MS (Non-derivatized) - 70eV, Positivesplash10-014r-2297000000-61f1682816d2f646cf982017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Bicyclomahanimbicine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Bicyclomahanimbicine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bicyclomahanimbicine 10V, Positive-QTOFsplash10-001i-0009000000-5a1ec8e3488e1eb4faf02016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bicyclomahanimbicine 20V, Positive-QTOFsplash10-0f89-0609000000-e777afe4cf651bb0a6492016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bicyclomahanimbicine 40V, Positive-QTOFsplash10-053r-2901000000-071d39c4b1daec07bb6a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bicyclomahanimbicine 10V, Negative-QTOFsplash10-001i-0109000000-72e6ece784edec2070a22016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bicyclomahanimbicine 20V, Negative-QTOFsplash10-001i-0309000000-c8384654d12c5de6daa92016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bicyclomahanimbicine 40V, Negative-QTOFsplash10-0ufr-0944000000-0dbbadd30a36ace0c33b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bicyclomahanimbicine 10V, Negative-QTOFsplash10-001i-0009000000-1e05108e34c227de397d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bicyclomahanimbicine 20V, Negative-QTOFsplash10-001i-0009000000-1e05108e34c227de397d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bicyclomahanimbicine 40V, Negative-QTOFsplash10-004i-0009000000-f617eed7f9a787405a5b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bicyclomahanimbicine 10V, Positive-QTOFsplash10-001i-0009000000-35af93a389987bbaf8d22021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bicyclomahanimbicine 20V, Positive-QTOFsplash10-001i-0409000000-8cc8e92dc851308da3622021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Bicyclomahanimbicine 40V, Positive-QTOFsplash10-0f89-1419000000-e63265b3c1f39dc1de052021-09-23Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB002040
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound77994099
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .