Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:36:15 UTC
Update Date2022-03-07 02:52:31 UTC
HMDB IDHMDB0030343
Secondary Accession Numbers
  • HMDB30343
Metabolite Identification
Common NameCorchoroside B
DescriptionCorchoroside B belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton. Corchoroside B is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563861971
Synonyms
ValueSource
Corchoriside bHMDB
Corchorosid bHMDB
Corchoroside bMeSH
Chemical FormulaC29H42O8
Average Molecular Weight518.639
Monoisotopic Molecular Weight518.28796832
IUPAC Name4-{11-hydroxy-2,15-dimethyl-5-[(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-6-en-14-yl}-2,5-dihydrofuran-2-one
Traditional Name4-{11-hydroxy-2,15-dimethyl-5-[(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-6-en-14-yl}-5H-furan-2-one
CAS Registry Number35536-76-6
SMILES
CC1OC(OC2CCC3(C)C4CCC5(C)C(CCC5(O)C4CCC3=C2)C2=CC(=O)OC2)C(O)C(O)C1O
InChI Identifier
InChI=1S/C29H42O8/c1-15-23(31)24(32)25(33)26(36-15)37-18-6-9-27(2)17(13-18)4-5-21-20(27)7-10-28(3)19(8-11-29(21,28)34)16-12-22(30)35-14-16/h12-13,15,18-21,23-26,31-34H,4-11,14H2,1-3H3
InChI KeyQREPIJRHFLRVPB-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassSteroidal glycosides
Direct ParentSteroidal glycosides
Alternative Parents
Substituents
  • Steroidal glycoside
  • Steroid lactone
  • Androstane-skeleton
  • 14-hydroxysteroid
  • Hydroxysteroid
  • Delta-4-steroid
  • Hexose monosaccharide
  • Glycosyl compound
  • O-glycosyl compound
  • 2-furanone
  • Monosaccharide
  • Oxane
  • Cyclic alcohol
  • Dihydrofuran
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Tertiary alcohol
  • Lactone
  • Carboxylic acid ester
  • Secondary alcohol
  • Organoheterocyclic compound
  • Oxacycle
  • Acetal
  • Carboxylic acid derivative
  • Monocarboxylic acid or derivatives
  • Polyol
  • Organic oxygen compound
  • Alcohol
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Organooxygen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point222 - 224 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.09 g/LALOGPS
logP1.81ALOGPS
logP2.09ChemAxon
logS-3.8ALOGPS
pKa (Strongest Acidic)7.18ChemAxon
pKa (Strongest Basic)0.27ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area125.68 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity135.21 m³·mol⁻¹ChemAxon
Polarizability57.22 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+219.331661259
DarkChem[M-H]-207.09631661259
DeepCCS[M+H]+217.86130932474
DeepCCS[M-H]-215.50330932474
DeepCCS[M-2H]-248.38830932474
DeepCCS[M+Na]+224.4330932474
AllCCS[M+H]+225.932859911
AllCCS[M+H-H2O]+224.532859911
AllCCS[M+NH4]+227.232859911
AllCCS[M+Na]+227.532859911
AllCCS[M-H]-213.132859911
AllCCS[M+Na-2H]-215.332859911
AllCCS[M+HCOO]-217.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Corchoroside BCC1OC(OC2CCC3(C)C4CCC5(C)C(CCC5(O)C4CCC3=C2)C2=CC(=O)OC2)C(O)C(O)C1O3418.6Standard polar33892256
Corchoroside BCC1OC(OC2CCC3(C)C4CCC5(C)C(CCC5(O)C4CCC3=C2)C2=CC(=O)OC2)C(O)C(O)C1O3895.1Standard non polar33892256
Corchoroside BCC1OC(OC2CCC3(C)C4CCC5(C)C(CCC5(O)C4CCC3=C2)C2=CC(=O)OC2)C(O)C(O)C1O4736.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Corchoroside B,1TMS,isomer #1CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C)C3(C)CC2)C(O)C(O)C1O4499.9Semi standard non polar33892256
Corchoroside B,1TMS,isomer #2CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O[Si](C)(C)C)C(O)C1O4461.1Semi standard non polar33892256
Corchoroside B,1TMS,isomer #3CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O)C(O[Si](C)(C)C)C1O4490.8Semi standard non polar33892256
Corchoroside B,1TMS,isomer #4CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O)C(O)C1O[Si](C)(C)C4502.1Semi standard non polar33892256
Corchoroside B,2TMS,isomer #1CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C)C3(C)CC2)C(O[Si](C)(C)C)C(O)C1O4407.3Semi standard non polar33892256
Corchoroside B,2TMS,isomer #2CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C)C3(C)CC2)C(O)C(O[Si](C)(C)C)C1O4432.2Semi standard non polar33892256
Corchoroside B,2TMS,isomer #3CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C)C3(C)CC2)C(O)C(O)C1O[Si](C)(C)C4454.3Semi standard non polar33892256
Corchoroside B,2TMS,isomer #4CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O4433.3Semi standard non polar33892256
Corchoroside B,2TMS,isomer #5CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O[Si](C)(C)C)C(O)C1O[Si](C)(C)C4434.2Semi standard non polar33892256
Corchoroside B,2TMS,isomer #6CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O)C(O[Si](C)(C)C)C1O[Si](C)(C)C4443.7Semi standard non polar33892256
Corchoroside B,3TMS,isomer #1CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C)C3(C)CC2)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O4336.9Semi standard non polar33892256
Corchoroside B,3TMS,isomer #2CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C)C3(C)CC2)C(O[Si](C)(C)C)C(O)C1O[Si](C)(C)C4335.7Semi standard non polar33892256
Corchoroside B,3TMS,isomer #3CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C)C3(C)CC2)C(O)C(O[Si](C)(C)C)C1O[Si](C)(C)C4345.7Semi standard non polar33892256
Corchoroside B,3TMS,isomer #4CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O[Si](C)(C)C4410.6Semi standard non polar33892256
Corchoroside B,4TMS,isomer #1CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C)C3(C)CC2)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O[Si](C)(C)C4276.3Semi standard non polar33892256
Corchoroside B,1TBDMS,isomer #1CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C(C)(C)C)C3(C)CC2)C(O)C(O)C1O4704.8Semi standard non polar33892256
Corchoroside B,1TBDMS,isomer #2CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O[Si](C)(C)C(C)(C)C)C(O)C1O4687.6Semi standard non polar33892256
Corchoroside B,1TBDMS,isomer #3CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O)C(O[Si](C)(C)C(C)(C)C)C1O4713.1Semi standard non polar33892256
Corchoroside B,1TBDMS,isomer #4CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O)C(O)C1O[Si](C)(C)C(C)(C)C4729.1Semi standard non polar33892256
Corchoroside B,2TBDMS,isomer #1CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C(C)(C)C)C3(C)CC2)C(O[Si](C)(C)C(C)(C)C)C(O)C1O4839.2Semi standard non polar33892256
Corchoroside B,2TBDMS,isomer #2CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C(C)(C)C)C3(C)CC2)C(O)C(O[Si](C)(C)C(C)(C)C)C1O4854.2Semi standard non polar33892256
Corchoroside B,2TBDMS,isomer #3CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C(C)(C)C)C3(C)CC2)C(O)C(O)C1O[Si](C)(C)C(C)(C)C4875.9Semi standard non polar33892256
Corchoroside B,2TBDMS,isomer #4CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O4866.6Semi standard non polar33892256
Corchoroside B,2TBDMS,isomer #5CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O[Si](C)(C)C(C)(C)C)C(O)C1O[Si](C)(C)C(C)(C)C4864.6Semi standard non polar33892256
Corchoroside B,2TBDMS,isomer #6CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C4878.5Semi standard non polar33892256
Corchoroside B,3TBDMS,isomer #1CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C(C)(C)C)C3(C)CC2)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O4963.8Semi standard non polar33892256
Corchoroside B,3TBDMS,isomer #2CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C(C)(C)C)C3(C)CC2)C(O[Si](C)(C)C(C)(C)C)C(O)C1O[Si](C)(C)C(C)(C)C4957.3Semi standard non polar33892256
Corchoroside B,3TBDMS,isomer #3CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O[Si](C)(C)C(C)(C)C)C3(C)CC2)C(O)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C4971.9Semi standard non polar33892256
Corchoroside B,3TBDMS,isomer #4CC1OC(OC2C=C3CCC4C(CCC5(C)C(C6=CC(=O)OC6)CCC45O)C3(C)CC2)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C5035.2Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Corchoroside B GC-MS (Non-derivatized) - 70eV, Positivesplash10-0udu-9714540000-5577637ba41a97e2a2562017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Corchoroside B GC-MS (2 TMS) - 70eV, Positivesplash10-0002-4610219000-5bc113ec520777d476f32017-10-06Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 10V, Positive-QTOFsplash10-0pb9-0009440000-1f9ef2ae66054441a7682015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 20V, Positive-QTOFsplash10-0ab9-0209000000-578487504782619e528d2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 40V, Positive-QTOFsplash10-0apu-0629000000-649b54213aadf19cff132015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 10V, Positive-QTOFsplash10-0pb9-0009440000-1f9ef2ae66054441a7682015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 20V, Positive-QTOFsplash10-0ab9-0209000000-578487504782619e528d2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 40V, Positive-QTOFsplash10-0apu-0629000000-649b54213aadf19cff132015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 10V, Negative-QTOFsplash10-0gi0-1109560000-63a43745d4bc4e097e9a2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 20V, Negative-QTOFsplash10-0fk9-1109100000-b44800374525a7314ecb2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 40V, Negative-QTOFsplash10-00bc-1009000000-ad86d6eb47d4dace7a2a2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 10V, Negative-QTOFsplash10-0gi0-1109560000-63a43745d4bc4e097e9a2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 20V, Negative-QTOFsplash10-0fk9-1109100000-b44800374525a7314ecb2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 40V, Negative-QTOFsplash10-00bc-1009000000-ad86d6eb47d4dace7a2a2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 10V, Negative-QTOFsplash10-014i-0005190000-687b2e2a8d31d869a04b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 20V, Negative-QTOFsplash10-00xr-3009650000-ffc47d19b110edd7e71f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 40V, Negative-QTOFsplash10-00fr-3009300000-8b7df82cda5efcd88cc72021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 10V, Positive-QTOFsplash10-0lki-0237190000-81e1629b59880bdaf3ba2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 20V, Positive-QTOFsplash10-0n90-0096830000-86e626f88efd952dbd432021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Corchoroside B 40V, Positive-QTOFsplash10-06rl-7649700000-55491fbabedce51ca8852021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB002187
KNApSAcK IDNot Available
Chemspider ID21247337
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound12303931
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.