Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:36:57 UTC
Update Date2022-03-07 02:52:33 UTC
HMDB IDHMDB0030464
Secondary Accession Numbers
  • HMDB30464
Metabolite Identification
Common NameErythroskyrin
DescriptionErythroskyrin belongs to the class of organic compounds known as furofurans. These are organic compounds containing a two furan rings fused to each other. Furan is a five-membered aromatic ring with four carbon atoms and one oxygen atom. Based on a literature review very few articles have been published on Erythroskyrin.
Structure
Data?1563861989
Synonyms
ValueSource
Erythroskyrin (*sodium salt*)HMDB
ErythroskyrineHMDB
Chemical FormulaC26H33NO6
Average Molecular Weight455.5433
Monoisotopic Molecular Weight455.230787793
IUPAC Name4-hydroxy-3-[(2E,4E,6E,8Z,10E)-11-{3-hydroxy-5-methyl-hexahydrofuro[3,2-b]furan-2-yl}undeca-2,4,6,8,10-pentaenoyl]-1-methyl-5-(propan-2-yl)-2,5-dihydro-1H-pyrrol-2-one
Traditional Name4-hydroxy-3-[(2E,4E,6E,8Z,10E)-11-{3-hydroxy-5-methyl-hexahydrofuro[3,2-b]furan-2-yl}undeca-2,4,6,8,10-pentaenoyl]-5-isopropyl-1-methyl-5H-pyrrol-2-one
CAS Registry Number4987-27-3
SMILES
CC(C)C1N(C)C(=O)C(C(=O)\C=C\C=C\C=C\C=C/C=C/C2OC3CC(C)OC3C2O)=C1O
InChI Identifier
InChI=1S/C26H33NO6/c1-16(2)22-24(30)21(26(31)27(22)4)18(28)13-11-9-7-5-6-8-10-12-14-19-23(29)25-20(33-19)15-17(3)32-25/h5-14,16-17,19-20,22-23,25,29-30H,15H2,1-4H3/b6-5+,9-7+,10-8-,13-11+,14-12+
InChI KeyUIINQEVAMDOHAP-DWGJBWOZSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as furofurans. These are organic compounds containing a two furan rings fused to each other. Furan is a five-membered aromatic ring with four carbon atoms and one oxygen atom.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassFurofurans
Sub ClassNot Available
Direct ParentFurofurans
Alternative Parents
Substituents
  • Furofuran
  • Monosaccharide
  • Acryloyl-group
  • Enone
  • Vinylogous acid
  • Alpha,beta-unsaturated ketone
  • Tetrahydrofuran
  • Tertiary carboxylic acid amide
  • Pyrroline
  • Carboxamide group
  • Ketone
  • Lactam
  • Secondary alcohol
  • Carboxylic acid derivative
  • Dialkyl ether
  • Enol
  • Ether
  • Oxacycle
  • Azacycle
  • Carbonyl group
  • Organopnictogen compound
  • Alcohol
  • Organic oxide
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Organic nitrogen compound
  • Organonitrogen compound
  • Organooxygen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point130 - 133 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.023 g/LALOGPS
logP3.3ALOGPS
logP2.6ChemAxon
logS-4.3ALOGPS
pKa (Strongest Acidic)-0.22ChemAxon
pKa (Strongest Basic)2.97ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area96.3 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity132.51 m³·mol⁻¹ChemAxon
Polarizability51.04 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+199.77530932474
DeepCCS[M-H]-197.37930932474
DeepCCS[M-2H]-230.5430932474
DeepCCS[M+Na]+205.68730932474
AllCCS[M+H]+222.432859911
AllCCS[M+H-H2O]+219.932859911
AllCCS[M+NH4]+224.732859911
AllCCS[M+Na]+225.332859911
AllCCS[M-H]-218.632859911
AllCCS[M+Na-2H]-221.232859911
AllCCS[M+HCOO]-224.332859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.5.31 minutes32390414
Predicted by Siyang on May 30, 202217.9974 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20220.84 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid3206.5 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid304.0 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid185.8 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid187.5 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid177.1 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid835.2 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid490.2 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)88.3 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1637.9 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid617.0 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1699.0 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid512.2 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid496.5 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate207.2 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA223.8 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water8.9 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
ErythroskyrinCC(C)C1N(C)C(=O)C(C(=O)\C=C\C=C\C=C\C=C/C=C/C2OC3CC(C)OC3C2O)=C1O5381.8Standard polar33892256
ErythroskyrinCC(C)C1N(C)C(=O)C(C(=O)\C=C\C=C\C=C\C=C/C=C/C2OC3CC(C)OC3C2O)=C1O3649.8Standard non polar33892256
ErythroskyrinCC(C)C1N(C)C(=O)C(C(=O)\C=C\C=C\C=C\C=C/C=C/C2OC3CC(C)OC3C2O)=C1O3808.6Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Erythroskyrin,1TMS,isomer #1CC1CC2OC(/C=C/C=C\C=C\C=C\C=C\C(=O)C3=C(O)C(C(C)C)N(C)C3=O)C(O[Si](C)(C)C)C2O13658.4Semi standard non polar33892256
Erythroskyrin,1TMS,isomer #2CC1CC2OC(/C=C/C=C\C=C\C=C\C=C\C(=O)C3=C(O[Si](C)(C)C)C(C(C)C)N(C)C3=O)C(O)C2O13609.2Semi standard non polar33892256
Erythroskyrin,2TMS,isomer #1CC1CC2OC(/C=C/C=C\C=C\C=C\C=C\C(=O)C3=C(O[Si](C)(C)C)C(C(C)C)N(C)C3=O)C(O[Si](C)(C)C)C2O13607.4Semi standard non polar33892256
Erythroskyrin,1TBDMS,isomer #1CC1CC2OC(/C=C/C=C\C=C\C=C\C=C\C(=O)C3=C(O)C(C(C)C)N(C)C3=O)C(O[Si](C)(C)C(C)(C)C)C2O13874.1Semi standard non polar33892256
Erythroskyrin,1TBDMS,isomer #2CC1CC2OC(/C=C/C=C\C=C\C=C\C=C\C(=O)C3=C(O[Si](C)(C)C(C)(C)C)C(C(C)C)N(C)C3=O)C(O)C2O13829.5Semi standard non polar33892256
Erythroskyrin,2TBDMS,isomer #1CC1CC2OC(/C=C/C=C\C=C\C=C\C=C\C(=O)C3=C(O[Si](C)(C)C(C)(C)C)C(C(C)C)N(C)C3=O)C(O[Si](C)(C)C(C)(C)C)C2O14020.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Erythroskyrin GC-MS (Non-derivatized) - 70eV, Positivesplash10-08i0-9314300000-a60e187123ceeef2ab3b2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Erythroskyrin GC-MS (2 TMS) - 70eV, Positivesplash10-053r-9302740000-dec92268250fe3078ebd2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Erythroskyrin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Erythroskyrin 10V, Positive-QTOFsplash10-0a4i-0121900000-c1cb69cc80d7d5e2c0922016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Erythroskyrin 20V, Positive-QTOFsplash10-0a59-0593300000-975a6920db9da23aadf32016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Erythroskyrin 40V, Positive-QTOFsplash10-004r-9525300000-b299d22256b7648ecdfe2016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Erythroskyrin 10V, Negative-QTOFsplash10-0udi-1900600000-3ac068131e194ef477ed2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Erythroskyrin 20V, Negative-QTOFsplash10-0udi-1901200000-86323f3370c189b8e5e82016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Erythroskyrin 40V, Negative-QTOFsplash10-053r-9100000000-78c68deec0f0a5ade6822016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Erythroskyrin 10V, Negative-QTOFsplash10-0udi-0300900000-8c78537a991a414cf8612021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Erythroskyrin 20V, Negative-QTOFsplash10-0uea-1517900000-fd4cfd968e95c09a0b6d2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Erythroskyrin 40V, Negative-QTOFsplash10-01ox-9888100000-e198a8548061e21cda552021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Erythroskyrin 10V, Positive-QTOFsplash10-0a4i-0002900000-0dfed757f1e6cc81a4f92021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Erythroskyrin 20V, Positive-QTOFsplash10-0a4i-8889600000-6df731064b4ce096e9182021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Erythroskyrin 40V, Positive-QTOFsplash10-05gi-1950000000-67274d589f1e83d796592021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB002333
KNApSAcK IDNot Available
Chemspider ID35013203
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .