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Showing metabocard for Octafluorocyclobutane (HMDB0031292)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:42:09 UTC
Update Date2022-03-07 02:52:54 UTC
HMDB IDHMDB0031292
Secondary Accession Numbers
  • HMDB31292
Metabolite Identification
Common NameOctafluorocyclobutane
DescriptionPropellant and aerating agent in foamed or sprayed food products Octafluorocyclobutane is a dimer of tetrafluoroethylene. Its critical point is at 115.3 °C and 2.79 MPa. Octafluorocyclobutane, or perfluorocyclobutane, C4F8, is a compound of carbon and fluorine used in the production and processing of semiconductor materials and devices, for example as a deposition gas and etchant. It has also been investigated as a refrigerant in specialised applications, as a replacement for Ozone depleting chlorofluorocarbon refrigerants
Structure
Data?1563862106
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0031292 (Octafluorocyclobutane)


  Mrv0541 05061305512D          

 12 12  0  0  0  0            999 V2000
    0.9958    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125    0.9958    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125   -0.1709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1709    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6992    0.8435    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    1.6992   -0.0186    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.8435    1.6992    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0186    1.6992    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.8435   -0.8742    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0186   -0.8742    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8742    0.8435    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8742   -0.0186    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  1  1  0  0  0  0
  6  1  1  0  0  0  0
  7  2  1  0  0  0  0
  8  2  1  0  0  0  0
  9  3  1  0  0  0  0
 10  3  1  0  0  0  0
 11  4  1  0  0  0  0
 12  4  1  0  0  0  0
M  END
Download

3D MOL for HMDB0031292 (Octafluorocyclobutane)

HMDB0031292
     RDKit          3D
Octafluorocyclobutane
 12 12  0  0  0  0  0  0  0  0999 V2000
    1.1634   -0.1508   -1.5692 F   0  0  0  0  0  0  0  0  0  0  0  0
    1.0497    0.0658   -0.2225 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1868    0.2566    0.4844 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.1025   -0.9770    0.3916 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2384   -2.2320   -0.0765 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.0697   -0.8045    1.7585 F   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0052   -0.1393   -0.2631 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1884   -0.1345    0.4082 F   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1187   -0.3703   -1.6254 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0861    1.0478    0.0727 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2314    1.3359    1.4116 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1807    2.1024   -0.7703 F   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  4  6  1  0
  4  7  1  0
  7  8  1  0
  7  9  1  0
  7 10  1  0
 10 11  1  0
 10 12  1  0
 10  2  1  0
M  END
Download

3D SDF for HMDB0031292 (Octafluorocyclobutane)


  Mrv0541 05061305512D          

 12 12  0  0  0  0            999 V2000
    0.9958    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125    0.9958    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125   -0.1709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1709    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6992    0.8435    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    1.6992   -0.0186    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.8435    1.6992    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0186    1.6992    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.8435   -0.8742    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0186   -0.8742    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8742    0.8435    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8742   -0.0186    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  1  1  0  0  0  0
  6  1  1  0  0  0  0
  7  2  1  0  0  0  0
  8  2  1  0  0  0  0
  9  3  1  0  0  0  0
 10  3  1  0  0  0  0
 11  4  1  0  0  0  0
 12  4  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0031292

> <DATABASE_NAME>
hmdb

> <SMILES>
FC1(F)C(F)(F)C(F)(F)C1(F)F

> <INCHI_IDENTIFIER>
InChI=1S/C4F8/c5-1(6)2(7,8)4(11,12)3(1,9)10

> <INCHI_KEY>
BCCOBQSFUDVTJQ-UHFFFAOYSA-N

> <FORMULA>
C4F8

> <MOLECULAR_WEIGHT>
200.03

> <EXACT_MASS>
199.98722564

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_AVERAGE_POLARIZABILITY>
8.36272978969321

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
octafluorocyclobutane

> <ALOGPS_LOGP>
2.98

> <JCHEM_LOGP>
2.8025708573333334

> <ALOGPS_LOGS>
-3.19

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0

> <JCHEM_REFRACTIVITY>
18.672000000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.29e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
octafluorocyclobutane

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for HMDB0031292 (Octafluorocyclobutane)

HMDB0031292
     RDKit          3D
Octafluorocyclobutane
 12 12  0  0  0  0  0  0  0  0999 V2000
    1.1634   -0.1508   -1.5692 F   0  0  0  0  0  0  0  0  0  0  0  0
    1.0497    0.0658   -0.2225 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1868    0.2566    0.4844 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.1025   -0.9770    0.3916 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2384   -2.2320   -0.0765 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.0697   -0.8045    1.7585 F   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0052   -0.1393   -0.2631 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1884   -0.1345    0.4082 F   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1187   -0.3703   -1.6254 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0861    1.0478    0.0727 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2314    1.3359    1.4116 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1807    2.1024   -0.7703 F   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  4  6  1  0
  4  7  1  0
  7  8  1  0
  7  9  1  0
  7 10  1  0
 10 11  1  0
 10 12  1  0
 10  2  1  0
M  END
Download

PDB for HMDB0031292 (Octafluorocyclobutane)

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       1.859   0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.770   1.859   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.770  -0.319   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.319   0.770   0.000  0.00  0.00           C+0
HETATM    5  F   UNK     0       3.172   1.575   0.000  0.00  0.00           F+0
HETATM    6  F   UNK     0       3.172  -0.035   0.000  0.00  0.00           F+0
HETATM    7  F   UNK     0       1.575   3.172   0.000  0.00  0.00           F+0
HETATM    8  F   UNK     0      -0.035   3.172   0.000  0.00  0.00           F+0
HETATM    9  F   UNK     0       1.575  -1.632   0.000  0.00  0.00           F+0
HETATM   10  F   UNK     0      -0.035  -1.632   0.000  0.00  0.00           F+0
HETATM   11  F   UNK     0      -1.632   1.575   0.000  0.00  0.00           F+0
HETATM   12  F   UNK     0      -1.632  -0.035   0.000  0.00  0.00           F+0
CONECT    1    2    3    5    6                                             
CONECT    2    1    4    7    8                                             
CONECT    3    1    4    9   10                                             
CONECT    4    2    3   11   12                                             
CONECT    5    1                                                            
CONECT    6    1                                                            
CONECT    7    2                                                            
CONECT    8    2                                                            
CONECT    9    3                                                            
CONECT   10    3                                                            
CONECT   11    4                                                            
CONECT   12    4                                                            
MASTER        0    0    0    0    0    0    0    0   12    0   24    0
END
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3D PDB for HMDB0031292 (Octafluorocyclobutane)

COMPND    HMDB0031292
HETATM    1  F1  UNL     1       1.163  -0.151  -1.569  1.00  0.00           F  
HETATM    2  C1  UNL     1       1.050   0.066  -0.223  1.00  0.00           C  
HETATM    3  F2  UNL     1       2.187   0.257   0.484  1.00  0.00           F  
HETATM    4  C2  UNL     1       0.103  -0.977   0.392  1.00  0.00           C  
HETATM    5  F3  UNL     1       0.238  -2.232  -0.076  1.00  0.00           F  
HETATM    6  F4  UNL     1       0.070  -0.805   1.758  1.00  0.00           F  
HETATM    7  C3  UNL     1      -1.005  -0.139  -0.263  1.00  0.00           C  
HETATM    8  F5  UNL     1      -2.188  -0.135   0.408  1.00  0.00           F  
HETATM    9  F6  UNL     1      -1.119  -0.370  -1.625  1.00  0.00           F  
HETATM   10  C4  UNL     1      -0.086   1.048   0.073  1.00  0.00           C  
HETATM   11  F7  UNL     1      -0.231   1.336   1.412  1.00  0.00           F  
HETATM   12  F8  UNL     1      -0.181   2.102  -0.770  1.00  0.00           F  
CONECT    1    2
CONECT    2    3    4   10
CONECT    4    5    6    7
CONECT    7    8    9   10
CONECT   10   11   12
END
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SMILES for HMDB0031292 (Octafluorocyclobutane)

FC1(F)C(F)(F)C(F)(F)C1(F)F
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INCHI for HMDB0031292 (Octafluorocyclobutane)

InChI=1S/C4F8/c5-1(6)2(7,8)4(11,12)3(1,9)10
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View in JSmolView Stereo Labels
Synonyms
ValueSource
1,1,2,2,3,3,4,4-OctafluorocyclobutaneChEBI
e 946ChEBI
e-946ChEBI
e946ChEBI
Freon 318ChEBI
Freon C 318ChEBI
Freon C-318ChEBI
PerfluorocyclobutaneChEBI
1,1,2,2,3,3,4,4-Octafluoro-cyclobutaneHMDB
C318HMDB
CyclooctafluorobutaneHMDB
Fluorocarbon C-318HMDB
Freon C318HMDB
Halocarbon C-138HMDB
Octafluoro-cyclobutaneHMDB
Propellant C318HMDB
Chemical FormulaC4F8
Average Molecular Weight200.03
Monoisotopic Molecular Weight199.98722564
IUPAC Nameoctafluorocyclobutane
Traditional Nameoctafluorocyclobutane
CAS Registry Number115-25-3
SMILES
FC1(F)C(F)(F)C(F)(F)C1(F)F
InChI Identifier
InChI=1S/C4F8/c5-1(6)2(7,8)4(11,12)3(1,9)10
InChI KeyBCCOBQSFUDVTJQ-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as organofluorides. Organofluorides are compounds containing a chemical bond between a carbon atom and a fluorine atom.
KingdomOrganic compounds
Super ClassOrganohalogen compounds
ClassOrganofluorides
Sub ClassNot Available
Direct ParentOrganofluorides
Alternative Parents
Substituents
  • Hydrocarbon derivative
  • Organofluoride
  • Alkyl halide
  • Alkyl fluoride
  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateLiquid
Experimental Molecular Properties
PropertyValueReference
Melting Point-41.4 °CNot Available
Boiling Point-5.99 °C. @ 760.00 mm Hg (est)The Good Scents Company Information System
Water Solubility0.024 mg/mL at 25 °CNot Available
LogP0.403 (est)The Good Scents Company Information System
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.13 g/LALOGPS
logP2.98ALOGPS
logP2.8ChemAxon
logS-3.2ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity18.67 m³·mol⁻¹ChemAxon
Polarizability8.36 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+138.86130932474
DeepCCS[M-H]-136.46630932474
DeepCCS[M-2H]-171.33530932474
DeepCCS[M+Na]+145.57930932474
AllCCS[M+H]+141.432859911
AllCCS[M+H-H2O]+137.332859911
AllCCS[M+NH4]+145.132859911
AllCCS[M+Na]+146.232859911
AllCCS[M-H]-121.132859911
AllCCS[M+Na-2H]-121.932859911
AllCCS[M+HCOO]-122.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
OctafluorocyclobutaneFC1(F)C(F)(F)C(F)(F)C1(F)F519.6Standard polar33892256
OctafluorocyclobutaneFC1(F)C(F)(F)C(F)(F)C1(F)F326.7Standard non polar33892256
OctafluorocyclobutaneFC1(F)C(F)(F)C(F)(F)C1(F)F499.0Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Octafluorocyclobutane GC-MS (Non-derivatized) - 70eV, Positivesplash10-0002-9500000000-5faf4443ecf16cfe4ee72017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Octafluorocyclobutane GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Octafluorocyclobutane 10V, Positive-QTOFsplash10-0udi-0090000000-602dc2e702cca36e62202016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Octafluorocyclobutane 20V, Positive-QTOFsplash10-0udi-0190000000-ed06d55114c63af22b082016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Octafluorocyclobutane 40V, Positive-QTOFsplash10-0udi-0590000000-24d087ab9ec873afea7f2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Octafluorocyclobutane 10V, Negative-QTOFsplash10-0002-0900000000-d8510ea56ce7a6e6d8312016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Octafluorocyclobutane 20V, Negative-QTOFsplash10-0002-0900000000-d8510ea56ce7a6e6d8312016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Octafluorocyclobutane 40V, Negative-QTOFsplash10-0002-0900000000-d8510ea56ce7a6e6d8312016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Octafluorocyclobutane 10V, Positive-QTOFsplash10-0udi-0090000000-b33a857924593fea592d2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Octafluorocyclobutane 20V, Positive-QTOFsplash10-0udi-0090000000-b33a857924593fea592d2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Octafluorocyclobutane 40V, Positive-QTOFsplash10-0udi-0090000000-b33a857924593fea592d2021-09-23Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB003338
KNApSAcK IDNot Available
Chemspider ID13846040
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkOctafluorocyclobutane
METLIN IDNot Available
PubChem Compound8263
PDB IDNot Available
ChEBI ID31007
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1343641
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. ElSohly AM, Tschumper GS, Crocombe RA, Wang JT, Williams F: Computational and ESR studies of electron attachment to decafluorocyclopentane, octafluorocyclobutane, and hexafluorocyclopropane: electron affinities of the molecules and the structures of their stable negative ions as determined from 13C and 19F hyperfine coupling constants. J Am Chem Soc. 2005 Aug 3;127(30):10573-83. [PubMed:16045345 ]
  2. Simaan JA, Aviado DM: Hemodynamic effects of aerosol propellants. I. Cardiac depression in the dog. Toxicology. 1975 Nov;5(2):127-38. [PubMed:1209645 ]
  3. Zadoo S, Thompson JE: Rayleigh scattering measurements of several fluorocarbon gases. J Environ Monit. 2011 Nov;13(11):3294-7. doi: 10.1039/c1em10667h. Epub 2011 Oct 25. [PubMed:22027960 ]
  4. Andersson H, van der Wijngaart W, Stemme G: Micromachined filter-chamber array with passive valves for biochemical assays on beads. Electrophoresis. 2001 Jan;22(2):249-57. [PubMed:11288892 ]
  5. Peri SR, Akgun B, Satija SK, Jiang H, Enlow J, Bunning TJ, Foster MD: Control of interface nanoscale structure created by plasma-enhanced chemical vapor deposition. ACS Appl Mater Interfaces. 2011 Sep;3(9):3375-83. doi: 10.1021/am200543x. Epub 2011 Aug 29. [PubMed:21875044 ]
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