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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:42:26 UTC
Update Date2022-03-07 02:52:56 UTC
HMDB IDHMDB0031345
Secondary Accession Numbers
  • HMDB31345
Metabolite Identification
Common NameCalystegine A6
DescriptionCalystegine A6 belongs to the class of organic compounds known as tropane alkaloids. These are organic compounds containing the nitrogenous bicyclic alkaloid parent N-Methyl-8-azabicyclo[3.2.1]octane. Based on a literature review very few articles have been published on Calystegine A6.
Structure
Data?1563862112
SynonymsNot Available
Chemical FormulaC7H13NO3
Average Molecular Weight159.183
Monoisotopic Molecular Weight159.089543287
IUPAC Name8-azabicyclo[3.2.1]octane-1,2,7-triol
Traditional Name8-azabicyclo[3.2.1]octane-1,2,7-triol
CAS Registry Number177794-04-6
SMILES
OC1CC2CCC(O)C1(O)N2
InChI Identifier
InChI=1S/C7H13NO3/c9-5-2-1-4-3-6(10)7(5,11)8-4/h4-6,8-11H,1-3H2
InChI KeyYOBNKFROEGVQPW-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as tropane alkaloids. These are organic compounds containing the nitrogenous bicyclic alkaloid parent N-Methyl-8-azabicyclo[3.2.1]Octane.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassTropane alkaloids
Sub ClassNot Available
Direct ParentTropane alkaloids
Alternative Parents
Substituents
  • Tropane alkaloid
  • Piperidine
  • Cyclic alcohol
  • Pyrrolidine
  • Hemiaminal
  • Secondary alcohol
  • Alkanolamine
  • Secondary aliphatic amine
  • Polyol
  • Azacycle
  • Secondary amine
  • Organoheterocyclic compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Alcohol
  • Hydrocarbon derivative
  • Amine
  • Organic nitrogen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility669 g/LALOGPS
logP-1.1ALOGPS
logP-1.2ChemAxon
logS0.62ALOGPS
pKa (Strongest Acidic)11.6ChemAxon
pKa (Strongest Basic)9.05ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area72.72 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity37.86 m³·mol⁻¹ChemAxon
Polarizability15.83 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+134.04531661259
DarkChem[M-H]-129.66631661259
DeepCCS[M+H]+135.44130932474
DeepCCS[M-H]-132.34130932474
DeepCCS[M-2H]-169.37530932474
DeepCCS[M+Na]+144.34630932474
AllCCS[M+H]+136.932859911
AllCCS[M+H-H2O]+132.532859911
AllCCS[M+NH4]+140.932859911
AllCCS[M+Na]+142.132859911
AllCCS[M-H]-128.532859911
AllCCS[M+Na-2H]-129.432859911
AllCCS[M+HCOO]-130.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Calystegine A6OC1CC2CCC(O)C1(O)N22951.3Standard polar33892256
Calystegine A6OC1CC2CCC(O)C1(O)N21477.4Standard non polar33892256
Calystegine A6OC1CC2CCC(O)C1(O)N21624.5Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Calystegine A6,1TMS,isomer #1C[Si](C)(C)OC1CC2CCC(O)C1(O)N21662.9Semi standard non polar33892256
Calystegine A6,1TMS,isomer #2C[Si](C)(C)OC1CCC2CC(O)C1(O)N21596.0Semi standard non polar33892256
Calystegine A6,1TMS,isomer #3C[Si](C)(C)OC12NC(CCC1O)CC2O1660.8Semi standard non polar33892256
Calystegine A6,1TMS,isomer #4C[Si](C)(C)N1C2CCC(O)C1(O)C(O)C21648.7Semi standard non polar33892256
Calystegine A6,2TMS,isomer #1C[Si](C)(C)OC1CCC2CC(O[Si](C)(C)C)C1(O)N21636.4Semi standard non polar33892256
Calystegine A6,2TMS,isomer #2C[Si](C)(C)OC1CC2CCC(O)C1(O[Si](C)(C)C)N21664.3Semi standard non polar33892256
Calystegine A6,2TMS,isomer #3C[Si](C)(C)OC1CC2CCC(O)C1(O)N2[Si](C)(C)C1692.8Semi standard non polar33892256
Calystegine A6,2TMS,isomer #4C[Si](C)(C)OC1CCC2CC(O)C1(O[Si](C)(C)C)N21644.5Semi standard non polar33892256
Calystegine A6,2TMS,isomer #5C[Si](C)(C)OC1CCC2CC(O)C1(O)N2[Si](C)(C)C1673.0Semi standard non polar33892256
Calystegine A6,2TMS,isomer #6C[Si](C)(C)OC12C(O)CCC(CC1O)N2[Si](C)(C)C1704.1Semi standard non polar33892256
Calystegine A6,3TMS,isomer #1C[Si](C)(C)OC1CCC2CC(O[Si](C)(C)C)C1(O[Si](C)(C)C)N21678.2Semi standard non polar33892256
Calystegine A6,3TMS,isomer #2C[Si](C)(C)OC1CCC2CC(O[Si](C)(C)C)C1(O)N2[Si](C)(C)C1727.6Semi standard non polar33892256
Calystegine A6,3TMS,isomer #3C[Si](C)(C)OC1CC2CCC(O)C1(O[Si](C)(C)C)N2[Si](C)(C)C1741.1Semi standard non polar33892256
Calystegine A6,3TMS,isomer #4C[Si](C)(C)OC1CCC2CC(O)C1(O[Si](C)(C)C)N2[Si](C)(C)C1748.7Semi standard non polar33892256
Calystegine A6,4TMS,isomer #1C[Si](C)(C)OC1CCC2CC(O[Si](C)(C)C)C1(O[Si](C)(C)C)N2[Si](C)(C)C1813.9Semi standard non polar33892256
Calystegine A6,4TMS,isomer #1C[Si](C)(C)OC1CCC2CC(O[Si](C)(C)C)C1(O[Si](C)(C)C)N2[Si](C)(C)C1824.7Standard non polar33892256
Calystegine A6,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1CC2CCC(O)C1(O)N21874.8Semi standard non polar33892256
Calystegine A6,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1CCC2CC(O)C1(O)N21842.2Semi standard non polar33892256
Calystegine A6,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC12NC(CCC1O)CC2O1888.5Semi standard non polar33892256
Calystegine A6,1TBDMS,isomer #4CC(C)(C)[Si](C)(C)N1C2CCC(O)C1(O)C(O)C21863.2Semi standard non polar33892256
Calystegine A6,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1CCC2CC(O[Si](C)(C)C(C)(C)C)C1(O)N22072.0Semi standard non polar33892256
Calystegine A6,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1CC2CCC(O)C1(O[Si](C)(C)C(C)(C)C)N22074.7Semi standard non polar33892256
Calystegine A6,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC1CC2CCC(O)C1(O)N2[Si](C)(C)C(C)(C)C2143.5Semi standard non polar33892256
Calystegine A6,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC1CCC2CC(O)C1(O[Si](C)(C)C(C)(C)C)N22069.0Semi standard non polar33892256
Calystegine A6,2TBDMS,isomer #5CC(C)(C)[Si](C)(C)OC1CCC2CC(O)C1(O)N2[Si](C)(C)C(C)(C)C2122.8Semi standard non polar33892256
Calystegine A6,2TBDMS,isomer #6CC(C)(C)[Si](C)(C)OC12C(O)CCC(CC1O)N2[Si](C)(C)C(C)(C)C2141.4Semi standard non polar33892256
Calystegine A6,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1CCC2CC(O[Si](C)(C)C(C)(C)C)C1(O[Si](C)(C)C(C)(C)C)N22321.9Semi standard non polar33892256
Calystegine A6,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1CCC2CC(O[Si](C)(C)C(C)(C)C)C1(O)N2[Si](C)(C)C(C)(C)C2386.8Semi standard non polar33892256
Calystegine A6,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC1CC2CCC(O)C1(O[Si](C)(C)C(C)(C)C)N2[Si](C)(C)C(C)(C)C2389.6Semi standard non polar33892256
Calystegine A6,3TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC1CCC2CC(O)C1(O[Si](C)(C)C(C)(C)C)N2[Si](C)(C)C(C)(C)C2391.9Semi standard non polar33892256
Calystegine A6,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1CCC2CC(O[Si](C)(C)C(C)(C)C)C1(O[Si](C)(C)C(C)(C)C)N2[Si](C)(C)C(C)(C)C2650.6Semi standard non polar33892256
Calystegine A6,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1CCC2CC(O[Si](C)(C)C(C)(C)C)C1(O[Si](C)(C)C(C)(C)C)N2[Si](C)(C)C(C)(C)C2611.5Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Calystegine A6 GC-MS (Non-derivatized) - 70eV, Positivesplash10-03di-4900000000-997290005c3288e9be972017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Calystegine A6 GC-MS (3 TMS) - 70eV, Positivesplash10-05g0-4194000000-f764886c307dd60d28e72017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Calystegine A6 GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Calystegine A6 10V, Positive-QTOFsplash10-03di-0900000000-473f121af7ca049dfc6f2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Calystegine A6 20V, Positive-QTOFsplash10-01ox-0900000000-85bc4a94aa5a8f372c4c2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Calystegine A6 40V, Positive-QTOFsplash10-0006-9600000000-aa288a293f134f31224f2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Calystegine A6 10V, Negative-QTOFsplash10-0a4i-0900000000-56165a2f3f97710d1b052015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Calystegine A6 20V, Negative-QTOFsplash10-0a4i-0900000000-5ce422396e8d1aad6e9b2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Calystegine A6 40V, Negative-QTOFsplash10-01ox-9800000000-284d539e498e52aa83042015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Calystegine A6 10V, Negative-QTOFsplash10-0a4i-0900000000-65379fece5feb3f20acb2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Calystegine A6 20V, Negative-QTOFsplash10-0a4i-0900000000-f26f0d1d35e26587b6a72021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Calystegine A6 40V, Negative-QTOFsplash10-0006-9700000000-d03588ceaf9a3a9d82b92021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Calystegine A6 10V, Positive-QTOFsplash10-03di-0900000000-6754afd8e17ed60468bf2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Calystegine A6 20V, Positive-QTOFsplash10-03di-0900000000-81b8398d0c7917bb68c82021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Calystegine A6 40V, Positive-QTOFsplash10-0002-9500000000-88ab2cb8dd985e5ff0ab2021-09-23Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB003409
KNApSAcK IDC00036864
Chemspider ID35013346
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound85271756
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .