Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:44:43 UTC
Update Date2022-03-07 02:53:04 UTC
HMDB IDHMDB0031665
Secondary Accession Numbers
  • HMDB31665
Metabolite Identification
Common NameDaucic acid
DescriptionDaucic acid, also known as daucate, belongs to the class of organic compounds known as beta hydroxy acids and derivatives. Beta hydroxy acids and derivatives are compounds containing a carboxylic acid substituted with a hydroxyl group on the C3 carbon atom. Daucic acid has been detected, but not quantified in, several different foods, such as carrots (Daucus carota ssp. sativus), sunflowers (Helianthus annuus), red beetroots (Beta vulgaris var. rubra), cereals and cereal products, and root vegetables. This could make daucic acid a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Daucic acid.
Structure
Data?1563862154
Synonyms
ValueSource
DaucateGenerator
(-)-Daucic acidHMDB
2,6-anhydro-3-Deoxy-D-lyxo-hept-2-enaric acidHMDB
2,6-anhydro-3-Deoxy-D-xylo-hept-2-enaric acid, 9ciHMDB
3,4-Dihydroxy-3,4-dihydro-2H-pyran-2,6-dicarboxylateGenerator
Daucic acidMeSH
Chemical FormulaC7H8O7
Average Molecular Weight204.1342
Monoisotopic Molecular Weight204.02700261
IUPAC Name3,4-dihydroxy-3,4-dihydro-2H-pyran-2,6-dicarboxylic acid
Traditional Name3,4-dihydroxy-3,4-dihydro-2H-pyran-2,6-dicarboxylic acid
CAS Registry Number34098-52-7
SMILES
OC1C=C(OC(C1O)C(O)=O)C(O)=O
InChI Identifier
InChI=1S/C7H8O7/c8-2-1-3(6(10)11)14-5(4(2)9)7(12)13/h1-2,4-5,8-9H,(H,10,11)(H,12,13)
InChI KeyKUKCUROTFRBUNU-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as beta hydroxy acids and derivatives. Beta hydroxy acids and derivatives are compounds containing a carboxylic acid substituted with a hydroxyl group on the C3 carbon atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassHydroxy acids and derivatives
Sub ClassBeta hydroxy acids and derivatives
Direct ParentBeta hydroxy acids and derivatives
Alternative Parents
Substituents
  • Beta-hydroxy acid
  • Pyran
  • Dicarboxylic acid or derivatives
  • 1,2-diol
  • Secondary alcohol
  • Carboxylic acid derivative
  • Oxacycle
  • Organoheterocyclic compound
  • Carboxylic acid
  • Organic oxygen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Alcohol
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility1000000 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility93.4 g/LALOGPS
logP-0.98ALOGPS
logP-1.8ChemAxon
logS-0.34ALOGPS
pKa (Strongest Acidic)2.85ChemAxon
pKa (Strongest Basic)-3.4ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area124.29 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity40.95 m³·mol⁻¹ChemAxon
Polarizability16.98 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+147.13731661259
DarkChem[M-H]-140.16831661259
DeepCCS[M+H]+135.89430932474
DeepCCS[M-H]-132.06730932474
DeepCCS[M-2H]-169.54230932474
DeepCCS[M+Na]+145.08130932474
AllCCS[M+H]+144.632859911
AllCCS[M+H-H2O]+140.432859911
AllCCS[M+NH4]+148.432859911
AllCCS[M+Na]+149.532859911
AllCCS[M-H]-134.932859911
AllCCS[M+Na-2H]-135.432859911
AllCCS[M+HCOO]-136.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Daucic acidOC1C=C(OC(C1O)C(O)=O)C(O)=O3577.1Standard polar33892256
Daucic acidOC1C=C(OC(C1O)C(O)=O)C(O)=O1660.3Standard non polar33892256
Daucic acidOC1C=C(OC(C1O)C(O)=O)C(O)=O1776.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Daucic acid,1TMS,isomer #1C[Si](C)(C)OC1C=C(C(=O)O)OC(C(=O)O)C1O1995.0Semi standard non polar33892256
Daucic acid,1TMS,isomer #2C[Si](C)(C)OC1C(O)C=C(C(=O)O)OC1C(=O)O1948.3Semi standard non polar33892256
Daucic acid,1TMS,isomer #3C[Si](C)(C)OC(=O)C1OC(C(=O)O)=CC(O)C1O1904.4Semi standard non polar33892256
Daucic acid,1TMS,isomer #4C[Si](C)(C)OC(=O)C1=CC(O)C(O)C(C(=O)O)O11950.5Semi standard non polar33892256
Daucic acid,2TMS,isomer #1C[Si](C)(C)OC(=O)C1=CC(O[Si](C)(C)C)C(O)C(C(=O)O)O11997.7Semi standard non polar33892256
Daucic acid,2TMS,isomer #2C[Si](C)(C)OC(=O)C1OC(C(=O)O)=CC(O[Si](C)(C)C)C1O1983.5Semi standard non polar33892256
Daucic acid,2TMS,isomer #3C[Si](C)(C)OC1C=C(C(=O)O)OC(C(=O)O)C1O[Si](C)(C)C2009.7Semi standard non polar33892256
Daucic acid,2TMS,isomer #4C[Si](C)(C)OC(=O)C1=CC(O)C(O[Si](C)(C)C)C(C(=O)O)O11962.8Semi standard non polar33892256
Daucic acid,2TMS,isomer #5C[Si](C)(C)OC(=O)C1OC(C(=O)O)=CC(O)C1O[Si](C)(C)C1952.2Semi standard non polar33892256
Daucic acid,2TMS,isomer #6C[Si](C)(C)OC(=O)C1=CC(O)C(O)C(C(=O)O[Si](C)(C)C)O11952.1Semi standard non polar33892256
Daucic acid,3TMS,isomer #1C[Si](C)(C)OC(=O)C1=CC(O[Si](C)(C)C)C(O[Si](C)(C)C)C(C(=O)O)O12027.4Semi standard non polar33892256
Daucic acid,3TMS,isomer #2C[Si](C)(C)OC(=O)C1=CC(O[Si](C)(C)C)C(O)C(C(=O)O[Si](C)(C)C)O12007.4Semi standard non polar33892256
Daucic acid,3TMS,isomer #3C[Si](C)(C)OC(=O)C1OC(C(=O)O)=CC(O[Si](C)(C)C)C1O[Si](C)(C)C2025.3Semi standard non polar33892256
Daucic acid,3TMS,isomer #4C[Si](C)(C)OC(=O)C1=CC(O)C(O[Si](C)(C)C)C(C(=O)O[Si](C)(C)C)O11978.8Semi standard non polar33892256
Daucic acid,4TMS,isomer #1C[Si](C)(C)OC(=O)C1=CC(O[Si](C)(C)C)C(O[Si](C)(C)C)C(C(=O)O[Si](C)(C)C)O12014.3Semi standard non polar33892256
Daucic acid,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1C=C(C(=O)O)OC(C(=O)O)C1O2234.8Semi standard non polar33892256
Daucic acid,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1C(O)C=C(C(=O)O)OC1C(=O)O2211.8Semi standard non polar33892256
Daucic acid,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)C1OC(C(=O)O)=CC(O)C1O2148.1Semi standard non polar33892256
Daucic acid,1TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)C1=CC(O)C(O)C(C(=O)O)O12213.7Semi standard non polar33892256
Daucic acid,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1=CC(O[Si](C)(C)C(C)(C)C)C(O)C(C(=O)O)O12497.5Semi standard non polar33892256
Daucic acid,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1OC(C(=O)O)=CC(O[Si](C)(C)C(C)(C)C)C1O2467.5Semi standard non polar33892256
Daucic acid,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC1C=C(C(=O)O)OC(C(=O)O)C1O[Si](C)(C)C(C)(C)C2501.6Semi standard non polar33892256
Daucic acid,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)C1=CC(O)C(O[Si](C)(C)C(C)(C)C)C(C(=O)O)O12444.4Semi standard non polar33892256
Daucic acid,2TBDMS,isomer #5CC(C)(C)[Si](C)(C)OC(=O)C1OC(C(=O)O)=CC(O)C1O[Si](C)(C)C(C)(C)C2443.9Semi standard non polar33892256
Daucic acid,2TBDMS,isomer #6CC(C)(C)[Si](C)(C)OC(=O)C1=CC(O)C(O)C(C(=O)O[Si](C)(C)C(C)(C)C)O12403.8Semi standard non polar33892256
Daucic acid,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1=CC(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(C(=O)O)O12718.0Semi standard non polar33892256
Daucic acid,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1=CC(O[Si](C)(C)C(C)(C)C)C(O)C(C(=O)O[Si](C)(C)C(C)(C)C)O12685.3Semi standard non polar33892256
Daucic acid,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)C1OC(C(=O)O)=CC(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C2709.8Semi standard non polar33892256
Daucic acid,3TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)C1=CC(O)C(O[Si](C)(C)C(C)(C)C)C(C(=O)O[Si](C)(C)C(C)(C)C)O12669.5Semi standard non polar33892256
Daucic acid,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1=CC(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(C(=O)O[Si](C)(C)C(C)(C)C)O12902.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Daucic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-9200000000-c107aeb7f5fd5fa69be92017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Daucic acid GC-MS (4 TMS) - 70eV, Positivesplash10-016r-6942700000-e3779dfa15819f949fce2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Daucic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daucic acid 10V, Positive-QTOFsplash10-0a4r-0950000000-71af3f39a1f7a16297c52016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daucic acid 20V, Positive-QTOFsplash10-0a4u-1910000000-bf7f796da3b777b90dab2016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daucic acid 40V, Positive-QTOFsplash10-00xr-9400000000-6dfd3d6b33643582b6722016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daucic acid 10V, Negative-QTOFsplash10-0zfr-0890000000-b2fa9933f00bfa674b7d2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daucic acid 20V, Negative-QTOFsplash10-0a4l-6910000000-608252c11ebb6fcca0202016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daucic acid 40V, Negative-QTOFsplash10-03xu-9600000000-0f6a1c12bc47c55986b02016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daucic acid 10V, Negative-QTOFsplash10-0zfr-0940000000-c4d8344316f2d0a5f49d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daucic acid 20V, Negative-QTOFsplash10-01ox-3900000000-0703d2681c2fa32a4d0a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daucic acid 40V, Negative-QTOFsplash10-0a4i-9100000000-52f45b652b33639686142021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daucic acid 10V, Positive-QTOFsplash10-000f-0900000000-851eb6b2474eb0b654a02021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daucic acid 20V, Positive-QTOFsplash10-05to-6910000000-75879a93910098cfe33a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daucic acid 40V, Positive-QTOFsplash10-006x-9100000000-c411da0ba2fd216bac872021-09-22Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB008325
KNApSAcK IDNot Available
Chemspider ID4475394
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5316316
PDB IDNot Available
ChEBI ID172444
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1827351
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Lichtenthaler FW, Nakamura K, Klotz J: (-)-Daucic acid: revision of configuration, synthesis, and biosynthetic implications. Angew Chem Int Ed Engl. 2003;42(47):5838-43. [PubMed:14673913 ]
  2. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .