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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:46:06 UTC
Update Date2022-03-07 02:53:09 UTC
HMDB IDHMDB0031878
Secondary Accession Numbers
  • HMDB31878
Metabolite Identification
Common NamePhysalin E acetate
DescriptionPhysalin E acetate belongs to the class of organic compounds known as physalins and derivatives. These are steroidal constituents of Physalis plants which possess an unusual 13,14-seco-16,24-cyclo-steroidal ring skeleton (where the bond that is normally present between the 13 and 14 positions in other steroids is broken while a new bond between positions 16 and 24 is formed). Based on a literature review a small amount of articles have been published on Physalin E acetate.
Structure
Data?1563862184
Synonyms
ValueSource
Physalin e acetic acidGenerator
N-g-Glutamyl-S-allylcysteineHMDB
N-Γ-glutamyl-S-allylcysteineHMDB
5,14-Dihydroxy-2,9,26-trimethyl-4,10,22,29-tetraoxo-3,19,23,28-tetraoxaoctacyclo[16.9.1.1¹⁸,²⁷.0¹,⁵.0²,²⁴.0⁸,¹⁷.0⁹,¹⁴.0²¹,²⁶]nonacos-11-en-16-yl acetic acidHMDB
Chemical FormulaC30H34O12
Average Molecular Weight586.5838
Monoisotopic Molecular Weight586.205026552
IUPAC Name5,14-dihydroxy-2,9,26-trimethyl-4,10,22,29-tetraoxo-3,19,23,28-tetraoxaoctacyclo[16.9.1.1¹⁸,²⁷.0¹,⁵.0²,²⁴.0⁸,¹⁷.0⁹,¹⁴.0²¹,²⁶]nonacos-11-en-16-yl acetate
Traditional Name5,14-dihydroxy-2,9,26-trimethyl-4,10,22,29-tetraoxo-3,19,23,28-tetraoxaoctacyclo[16.9.1.1¹⁸,²⁷.0¹,⁵.0²,²⁴.0⁸,¹⁷.0⁹,¹⁴.0²¹,²⁶]nonacos-11-en-16-yl acetate
CAS Registry Number70255-21-9
SMILES
CC(=O)OC1CC2(O)CC=CC(=O)C2(C)C2CCC3(O)C(=O)OC4(C)C5CC6(C)C7C(=O)C(OC347)(OCC6C(=O)O5)C12
InChI Identifier
InChI=1S/C30H34O12/c1-13(31)39-16-10-27(36)8-5-6-17(32)25(27,3)14-7-9-28(37)23(35)41-26(4)18-11-24(2)15(22(34)40-18)12-38-29(19(14)16)21(33)20(24)30(26,28)42-29/h5-6,14-16,18-20,36-37H,7-12H2,1-4H3
InChI KeyRDXUOLZCAJWFGV-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as physalins and derivatives. These are steroidal constituents of Physalis plants which possess an unusual 13,14-seco-16,24-cyclo-steroidal ring skeleton (where the bond that is normally present between the 13 and 14 positions in other steroids is broken while a new bond between positions 16 and 24 is formed).
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassPhysalins and derivatives
Direct ParentPhysalins and derivatives
Alternative Parents
Substituents
  • Physalin skeleton
  • Tricarboxylic acid or derivatives
  • Delta valerolactone
  • Ketal
  • Cyclohexenone
  • Delta_valerolactone
  • Oxepane
  • 3-furanone
  • Gamma butyrolactone
  • Oxane
  • Cyclic alcohol
  • Tetrahydrofuran
  • Tertiary alcohol
  • Lactone
  • Ketone
  • Carboxylic acid ester
  • Oxacycle
  • Acetal
  • Carboxylic acid derivative
  • Organoheterocyclic compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility1.75 g/LALOGPS
logP0.81ALOGPS
logP1.07ChemAxon
logS-2.5ALOGPS
pKa (Strongest Acidic)9.65ChemAxon
pKa (Strongest Basic)-3.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area171.96 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity136.8 m³·mol⁻¹ChemAxon
Polarizability56.5 ųChemAxon
Number of Rings8ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+230.38231661259
DarkChem[M-H]-220.15331661259
DeepCCS[M-2H]-258.34230932474
DeepCCS[M+Na]+232.92430932474
AllCCS[M+H]+224.132859911
AllCCS[M+H-H2O]+222.932859911
AllCCS[M+NH4]+225.232859911
AllCCS[M+Na]+225.532859911
AllCCS[M-H]-229.132859911
AllCCS[M+Na-2H]-230.832859911
AllCCS[M+HCOO]-232.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Physalin E acetateCC(=O)OC1CC2(O)CC=CC(=O)C2(C)C2CCC3(O)C(=O)OC4(C)C5CC6(C)C7C(=O)C(OC347)(OCC6C(=O)O5)C124506.0Standard polar33892256
Physalin E acetateCC(=O)OC1CC2(O)CC=CC(=O)C2(C)C2CCC3(O)C(=O)OC4(C)C5CC6(C)C7C(=O)C(OC347)(OCC6C(=O)O5)C123619.7Standard non polar33892256
Physalin E acetateCC(=O)OC1CC2(O)CC=CC(=O)C2(C)C2CCC3(O)C(=O)OC4(C)C5CC6(C)C7C(=O)C(OC347)(OCC6C(=O)O5)C124549.5Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Physalin E acetate,1TMS,isomer #1CC(=O)OC1CC2(O[Si](C)(C)C)CC=CC(=O)C2(C)C2CCC3(O)C(=O)OC4(C)C5CC6(C)C(COC7(OC34C6C7=O)C12)C(=O)O54365.4Semi standard non polar33892256
Physalin E acetate,1TMS,isomer #2CC(=O)OC1CC2(O)CC=CC(=O)C2(C)C2CCC3(O[Si](C)(C)C)C(=O)OC4(C)C5CC6(C)C(COC7(OC34C6C7=O)C12)C(=O)O54419.0Semi standard non polar33892256
Physalin E acetate,1TMS,isomer #3CC(=O)OC1CC2(O)CC=CC(=O)C2(C)C2CCC3(O)C(=O)OC4(C)C5CC6(C)C7=C(O[Si](C)(C)C)C(OCC6C(=O)O5)(OC734)C124220.3Semi standard non polar33892256
Physalin E acetate,2TMS,isomer #1CC(=O)OC1CC2(O[Si](C)(C)C)CC=CC(=O)C2(C)C2CCC3(O[Si](C)(C)C)C(=O)OC4(C)C5CC6(C)C(COC7(OC34C6C7=O)C12)C(=O)O54322.5Semi standard non polar33892256
Physalin E acetate,2TMS,isomer #2CC(=O)OC1CC2(O[Si](C)(C)C)CC=CC(=O)C2(C)C2CCC3(O)C(=O)OC4(C)C5CC6(C)C7=C(O[Si](C)(C)C)C(OCC6C(=O)O5)(OC734)C124118.6Semi standard non polar33892256
Physalin E acetate,2TMS,isomer #3CC(=O)OC1CC2(O)CC=CC(=O)C2(C)C2CCC3(O[Si](C)(C)C)C(=O)OC4(C)C5CC6(C)C7=C(O[Si](C)(C)C)C(OCC6C(=O)O5)(OC734)C124199.5Semi standard non polar33892256
Physalin E acetate,3TMS,isomer #1CC(=O)OC1CC2(O[Si](C)(C)C)CC=CC(=O)C2(C)C2CCC3(O[Si](C)(C)C)C(=O)OC4(C)C5CC6(C)C7=C(O[Si](C)(C)C)C(OCC6C(=O)O5)(OC734)C124067.5Semi standard non polar33892256
Physalin E acetate,3TMS,isomer #1CC(=O)OC1CC2(O[Si](C)(C)C)CC=CC(=O)C2(C)C2CCC3(O[Si](C)(C)C)C(=O)OC4(C)C5CC6(C)C7=C(O[Si](C)(C)C)C(OCC6C(=O)O5)(OC734)C124063.3Standard non polar33892256
Physalin E acetate,1TBDMS,isomer #1CC(=O)OC1CC2(O[Si](C)(C)C(C)(C)C)CC=CC(=O)C2(C)C2CCC3(O)C(=O)OC4(C)C5CC6(C)C(COC7(OC34C6C7=O)C12)C(=O)O54583.3Semi standard non polar33892256
Physalin E acetate,1TBDMS,isomer #2CC(=O)OC1CC2(O)CC=CC(=O)C2(C)C2CCC3(O[Si](C)(C)C(C)(C)C)C(=O)OC4(C)C5CC6(C)C(COC7(OC34C6C7=O)C12)C(=O)O54658.9Semi standard non polar33892256
Physalin E acetate,1TBDMS,isomer #3CC(=O)OC1CC2(O)CC=CC(=O)C2(C)C2CCC3(O)C(=O)OC4(C)C5CC6(C)C7=C(O[Si](C)(C)C(C)(C)C)C(OCC6C(=O)O5)(OC734)C124429.1Semi standard non polar33892256
Physalin E acetate,2TBDMS,isomer #1CC(=O)OC1CC2(O[Si](C)(C)C(C)(C)C)CC=CC(=O)C2(C)C2CCC3(O[Si](C)(C)C(C)(C)C)C(=O)OC4(C)C5CC6(C)C(COC7(OC34C6C7=O)C12)C(=O)O54772.2Semi standard non polar33892256
Physalin E acetate,2TBDMS,isomer #2CC(=O)OC1CC2(O[Si](C)(C)C(C)(C)C)CC=CC(=O)C2(C)C2CCC3(O)C(=O)OC4(C)C5CC6(C)C7=C(O[Si](C)(C)C(C)(C)C)C(OCC6C(=O)O5)(OC734)C124532.9Semi standard non polar33892256
Physalin E acetate,2TBDMS,isomer #3CC(=O)OC1CC2(O)CC=CC(=O)C2(C)C2CCC3(O[Si](C)(C)C(C)(C)C)C(=O)OC4(C)C5CC6(C)C7=C(O[Si](C)(C)C(C)(C)C)C(OCC6C(=O)O5)(OC734)C124630.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-7180290000-36db2fb9969af729c0922017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS (1 TMS) - 70eV, Positivesplash10-0077-7119146000-c3ee1ecab2e898b5482a2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS ("Physalin E acetate,1TMS,#1" TMS) - 70eV, PositiveNot Available2021-10-14Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS (TMS_2_2) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS (TMS_2_3) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS (TBDMS_1_3) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS (TBDMS_2_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS (TBDMS_2_2) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Physalin E acetate GC-MS (TBDMS_2_3) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Physalin E acetate 10V, Positive-QTOFsplash10-014r-0000090000-73d460bdcf50e4793ae32016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Physalin E acetate 20V, Positive-QTOFsplash10-00or-0000090000-95131025e0b15f8df1bb2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Physalin E acetate 40V, Positive-QTOFsplash10-004l-5100090000-61e01cbc7cd2163482092016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Physalin E acetate 10V, Negative-QTOFsplash10-000l-0000090000-37b813cd382087bcb3292016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Physalin E acetate 20V, Negative-QTOFsplash10-05ox-2000190000-be4eff60473d8728489c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Physalin E acetate 40V, Negative-QTOFsplash10-0a4m-8060980000-fdced309ffe0da4065002016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Physalin E acetate 10V, Negative-QTOFsplash10-0006-0000090000-2fd1980cfeb9375658522021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Physalin E acetate 20V, Negative-QTOFsplash10-0a6u-4000090000-2dd4b61b9657114e602b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Physalin E acetate 40V, Negative-QTOFsplash10-0a4i-6000090000-049ea0343cfec23e7a7a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Physalin E acetate 10V, Positive-QTOFsplash10-000i-0000090000-5f1463f5b3bdd43fcba72021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Physalin E acetate 20V, Positive-QTOFsplash10-004r-0000190000-5516d9d6a483f0de26e42021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Physalin E acetate 40V, Positive-QTOFsplash10-0udr-0823960000-afc30fff3c49ecd769182021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB008563
KNApSAcK IDC00057506
Chemspider ID35013390
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11193907
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.