Hmdb loader
You are using an unsupported browser. Please upgrade your browser to a newer version to get the best experience on Human Metabolome Database.
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:48:43 UTC
Update Date2023-02-21 17:21:47 UTC
HMDB IDHMDB0032247
Secondary Accession Numbers
  • HMDB32247
Metabolite Identification
Common Name(Z)-4-Dodecenal
Description(Z)-4-Dodecenal belongs to the class of organic compounds known as fatty aldehydes. These are long chain aldehydes with a chain of at least 12 carbon atoms. Thus, (Z)-4-dodecenal is considered to be a fatty aldehyde. Based on a literature review a small amount of articles have been published on (Z)-4-Dodecenal.
Structure
Data?1677000107
Synonyms
ValueSource
(e)-Tridec-4-enalHMDB
Z-4-DodecenalHMDB
Chemical FormulaC13H24O
Average Molecular Weight196.3291
Monoisotopic Molecular Weight196.18271539
IUPAC Name(4E)-tridec-4-enal
Traditional Name(4E)-tridec-4-enal
CAS Registry Number21944-98-9
SMILES
CCCCCCCC\C=C\CCC=O
InChI Identifier
InChI=1S/C13H24O/c1-2-3-4-5-6-7-8-9-10-11-12-13-14/h9-10,13H,2-8,11-12H2,1H3/b10-9+
InChI KeySMJHEMUFVYWLOU-MDZDMXLPSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as fatty aldehydes. These are long chain aldehydes with a chain of at least 12 carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty aldehydes
Direct ParentFatty aldehydes
Alternative Parents
Substituents
  • Fatty aldehyde
  • Alpha-hydrogen aldehyde
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aldehyde
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effect
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.00086 g/LALOGPS
logP5.67ALOGPS
logP4.4ChemAxon
logS-5.4ALOGPS
pKa (Strongest Acidic)15.72ChemAxon
pKa (Strongest Basic)-7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area17.07 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity63.47 m³·mol⁻¹ChemAxon
Polarizability26.18 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+152.03131661259
DarkChem[M-H]-152.02131661259
DeepCCS[M+H]+153.96430932474
DeepCCS[M-H]-150.1630932474
DeepCCS[M-2H]-188.01330932474
DeepCCS[M+Na]+163.41530932474
AllCCS[M+H]+152.632859911
AllCCS[M+H-H2O]+148.932859911
AllCCS[M+NH4]+156.032859911
AllCCS[M+Na]+157.032859911
AllCCS[M-H]-156.632859911
AllCCS[M+Na-2H]-158.132859911
AllCCS[M+HCOO]-159.832859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(Z)-4-DodecenalCCCCCCCC\C=C\CCC=O1837.9Standard polar33892256
(Z)-4-DodecenalCCCCCCCC\C=C\CCC=O1477.8Standard non polar33892256
(Z)-4-DodecenalCCCCCCCC\C=C\CCC=O1495.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(Z)-4-Dodecenal,1TMS,isomer #1CCCCCCCC/C=C/CC=CO[Si](C)(C)C1687.8Semi standard non polar33892256
(Z)-4-Dodecenal,1TMS,isomer #1CCCCCCCC/C=C/CC=CO[Si](C)(C)C1628.2Standard non polar33892256
(Z)-4-Dodecenal,1TBDMS,isomer #1CCCCCCCC/C=C/CC=CO[Si](C)(C)C(C)(C)C1912.5Semi standard non polar33892256
(Z)-4-Dodecenal,1TBDMS,isomer #1CCCCCCCC/C=C/CC=CO[Si](C)(C)C(C)(C)C1827.0Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (Z)-4-Dodecenal GC-MS (Non-derivatized) - 70eV, Positivesplash10-0002-9400000000-c41d90935b9d258ec1372017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (Z)-4-Dodecenal GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-4-Dodecenal 10V, Positive-QTOFsplash10-0002-0900000000-6d31c320e8e9970e7e622017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-4-Dodecenal 20V, Positive-QTOFsplash10-002b-7900000000-3aa5fc1eba782849da802017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-4-Dodecenal 40V, Positive-QTOFsplash10-052f-9100000000-3cb2a9ce0ce44ed7175a2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-4-Dodecenal 10V, Negative-QTOFsplash10-0002-0900000000-d3ed12488c9a66537e3f2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-4-Dodecenal 20V, Negative-QTOFsplash10-0002-1900000000-9ff0e4774638096874af2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-4-Dodecenal 40V, Negative-QTOFsplash10-0006-9200000000-ea19ee928cbb4e97e6962017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-4-Dodecenal 10V, Positive-QTOFsplash10-05o0-9100000000-7387a3db82877bf1be8d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-4-Dodecenal 20V, Positive-QTOFsplash10-05o0-9000000000-05eae06c55f0b13836d82021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-4-Dodecenal 40V, Positive-QTOFsplash10-05mo-9000000000-84476ccce9f79e909afe2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-4-Dodecenal 10V, Negative-QTOFsplash10-0002-0900000000-95583d313ba2d4ace4b12021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-4-Dodecenal 20V, Negative-QTOFsplash10-0002-0900000000-cfa6f3e1e0e4e8cabdcc2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-4-Dodecenal 40V, Negative-QTOFsplash10-00kf-9500000000-00718cd26cdd21a59c482021-09-22Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB009339
KNApSAcK IDNot Available
Chemspider ID9151620
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10976419
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). EAFUS: Everything Added to Food in the United States.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.