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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:52:09 UTC
Update Date2022-03-07 02:53:29 UTC
HMDB IDHMDB0032837
Secondary Accession Numbers
  • HMDB32837
Metabolite Identification
Common NameGanoderic acid DM
DescriptionLucyoside R belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton. Lucyoside R is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563862315
Synonyms
ValueSource
3,7-Dioxolanosta-8,24-dien-26-Oic acidHMDB
(2E)-2-Methyl-6-{2,6,6,11,15-pentamethyl-5,9-dioxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-14-yl}hept-2-enoateGenerator
Ganoderic acid DMMeSH
Ganoderate DMGenerator
Chemical FormulaC30H44O4
Average Molecular Weight468.668
Monoisotopic Molecular Weight468.323959896
IUPAC Name(2E)-2-methyl-6-{2,6,6,11,15-pentamethyl-5,9-dioxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-14-yl}hept-2-enoic acid
Traditional Name(2E)-2-methyl-6-{2,6,6,11,15-pentamethyl-5,9-dioxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-14-yl}hept-2-enoic acid
CAS Registry Number173075-45-1
SMILES
CC(CC\C=C(/C)C(O)=O)C1CCC2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1CC3=O
InChI Identifier
InChI=1S/C30H44O4/c1-18(9-8-10-19(2)26(33)34)20-11-16-30(7)25-21(12-15-29(20,30)6)28(5)14-13-24(32)27(3,4)23(28)17-22(25)31/h10,18,20,23H,8-9,11-17H2,1-7H3,(H,33,34)/b19-10+
InChI KeyZTKZZRIVAYGFSF-VXLYETTFSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTerpene glycosides
Direct ParentTriterpene saponins
Alternative Parents
Substituents
  • Triterpene saponin
  • Triterpenoid
  • 12-hydroxysteroid
  • Hydroxysteroid
  • Steroid
  • Fatty acyl glycoside
  • Fatty acyl glycoside of mono- or disaccharide
  • Hexose monosaccharide
  • O-glycosyl compound
  • Glycosyl compound
  • Fatty acyl
  • Oxane
  • Monosaccharide
  • Cyclic alcohol
  • Secondary alcohol
  • Oxacycle
  • Organoheterocyclic compound
  • Polyol
  • Carboxylic acid derivative
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Acetal
  • Hydrocarbon derivative
  • Alcohol
  • Organic oxygen compound
  • Organic oxide
  • Organooxygen compound
  • Carbonyl group
  • Primary alcohol
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0012 g/LALOGPS
logP6.37ALOGPS
logP6.79ChemAxon
logS-5.6ALOGPS
pKa (Strongest Acidic)4.81ChemAxon
pKa (Strongest Basic)-5.2ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area71.44 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity136.13 m³·mol⁻¹ChemAxon
Polarizability55.04 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+208.331661259
DarkChem[M-H]-203.99931661259
DeepCCS[M-2H]-246.67530932474
DeepCCS[M+Na]+222.09930932474
AllCCS[M+H]+216.632859911
AllCCS[M+H-H2O]+214.932859911
AllCCS[M+NH4]+218.232859911
AllCCS[M+Na]+218.632859911
AllCCS[M-H]-218.632859911
AllCCS[M+Na-2H]-220.932859911
AllCCS[M+HCOO]-223.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Ganoderic acid DMCC(CC\C=C(/C)C(O)=O)C1CCC2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1CC3=O5118.8Standard polar33892256
Ganoderic acid DMCC(CC\C=C(/C)C(O)=O)C1CCC2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1CC3=O3573.2Standard non polar33892256
Ganoderic acid DMCC(CC\C=C(/C)C(O)=O)C1CCC2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1CC3=O3895.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Ganoderic acid DM,1TMS,isomer #1C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1CC3=O)C(=O)O[Si](C)(C)C3811.3Semi standard non polar33892256
Ganoderic acid DM,1TMS,isomer #2C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C)C(C)(C)C1CC3=O)C(=O)O3820.8Semi standard non polar33892256
Ganoderic acid DM,1TMS,isomer #3C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1C=C3O[Si](C)(C)C)C(=O)O3803.6Semi standard non polar33892256
Ganoderic acid DM,2TMS,isomer #1C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C)C(C)(C)C1CC3=O)C(=O)O[Si](C)(C)C3742.5Semi standard non polar33892256
Ganoderic acid DM,2TMS,isomer #1C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C)C(C)(C)C1CC3=O)C(=O)O[Si](C)(C)C3487.5Standard non polar33892256
Ganoderic acid DM,2TMS,isomer #2C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1C=C3O[Si](C)(C)C)C(=O)O[Si](C)(C)C3692.7Semi standard non polar33892256
Ganoderic acid DM,2TMS,isomer #2C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1C=C3O[Si](C)(C)C)C(=O)O[Si](C)(C)C3572.6Standard non polar33892256
Ganoderic acid DM,2TMS,isomer #3C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C)C(C)(C)C1C=C3O[Si](C)(C)C)C(=O)O3697.9Semi standard non polar33892256
Ganoderic acid DM,2TMS,isomer #3C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C)C(C)(C)C1C=C3O[Si](C)(C)C)C(=O)O3466.4Standard non polar33892256
Ganoderic acid DM,3TMS,isomer #1C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C)C(C)(C)C1C=C3O[Si](C)(C)C)C(=O)O[Si](C)(C)C3619.7Semi standard non polar33892256
Ganoderic acid DM,3TMS,isomer #1C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C)C(C)(C)C1C=C3O[Si](C)(C)C)C(=O)O[Si](C)(C)C3494.7Standard non polar33892256
Ganoderic acid DM,1TBDMS,isomer #1C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1CC3=O)C(=O)O[Si](C)(C)C(C)(C)C4051.9Semi standard non polar33892256
Ganoderic acid DM,1TBDMS,isomer #2C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C(C)(C)C)C(C)(C)C1CC3=O)C(=O)O4047.4Semi standard non polar33892256
Ganoderic acid DM,1TBDMS,isomer #3C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1C=C3O[Si](C)(C)C(C)(C)C)C(=O)O4044.2Semi standard non polar33892256
Ganoderic acid DM,2TBDMS,isomer #1C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C(C)(C)C)C(C)(C)C1CC3=O)C(=O)O[Si](C)(C)C(C)(C)C4206.9Semi standard non polar33892256
Ganoderic acid DM,2TBDMS,isomer #1C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C(C)(C)C)C(C)(C)C1CC3=O)C(=O)O[Si](C)(C)C(C)(C)C3865.3Standard non polar33892256
Ganoderic acid DM,2TBDMS,isomer #2C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1C=C3O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C4132.7Semi standard non polar33892256
Ganoderic acid DM,2TBDMS,isomer #2C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1C=C3O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C3974.4Standard non polar33892256
Ganoderic acid DM,2TBDMS,isomer #3C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C(C)(C)C)C(C)(C)C1C=C3O[Si](C)(C)C(C)(C)C)C(=O)O4155.4Semi standard non polar33892256
Ganoderic acid DM,2TBDMS,isomer #3C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C(C)(C)C)C(C)(C)C1C=C3O[Si](C)(C)C(C)(C)C)C(=O)O3812.2Standard non polar33892256
Ganoderic acid DM,3TBDMS,isomer #1C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C(C)(C)C)C(C)(C)C1C=C3O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C4271.1Semi standard non polar33892256
Ganoderic acid DM,3TBDMS,isomer #1C/C(=C\CCC(C)C1CCC2(C)C3=C(CCC12C)C1(C)CC=C(O[Si](C)(C)C(C)(C)C)C(C)(C)C1C=C3O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C3987.5Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid DM GC-MS (Non-derivatized) - 70eV, Positivesplash10-0udi-0115900000-71af56be288e4b18c2ca2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid DM GC-MS (1 TMS) - 70eV, Positivesplash10-004i-1114490000-e65ba36a6bb6757418672017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid DM GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid DM 10V, Positive-QTOFsplash10-0gb9-0001900000-a7dcecd5cfe15ccffc202016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid DM 20V, Positive-QTOFsplash10-00r2-1009600000-98962a1e2f807abaaf072016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid DM 40V, Positive-QTOFsplash10-0v4i-3239400000-dd2f6271e1a35ed52a2c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid DM 10V, Negative-QTOFsplash10-014i-0000900000-6536e6919d909b2878bb2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid DM 20V, Negative-QTOFsplash10-00xr-0000900000-bbdc6bc3d999c25e91742016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid DM 40V, Negative-QTOFsplash10-0a4i-5001900000-93817ad3d28edf7c14572016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid DM 10V, Positive-QTOFsplash10-00kb-9234600000-619145f84fbd1be763412021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid DM 20V, Positive-QTOFsplash10-0002-9007100000-62c0d296825d7cd29ac52021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid DM 40V, Positive-QTOFsplash10-0a6v-9138000000-13c4fae241b835fb85032021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid DM 10V, Negative-QTOFsplash10-014i-0000900000-82f5e55dd8249410962f2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid DM 20V, Negative-QTOFsplash10-00dj-0006900000-0ea334b9e562646f558b2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid DM 40V, Negative-QTOFsplash10-0abd-3006900000-b6e98f930541cb4c8ee32021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB010813
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound73745597
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.