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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:53:36 UTC
Update Date2022-03-07 02:53:35 UTC
HMDB IDHMDB0033078
Secondary Accession Numbers
  • HMDB33078
Metabolite Identification
Common NameGanoderic acid W
DescriptionFormononetin 7-(6''-methylmalonylglucoside) belongs to the class of organic compounds known as scalarane sesterterpenoids. These are sesterterpenoids with a structure based on the scalarane backbone. Scalarane is a tetracyclic compound, which is similar the homoandrostane with five methyl groups at the 4-, 4-, 8-, 17-, 17a-positions. Formononetin 7-(6''-methylmalonylglucoside) is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563862349
Synonyms
ValueSource
(2Z)-6-[5,12-Bis(acetyloxy)-9-hydroxy-2,6,6,11,15-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-14-yl]-2-methylhept-2-enoateGenerator
Ganoderate WGenerator
Chemical FormulaC34H52O7
Average Molecular Weight572.7725
Monoisotopic Molecular Weight572.371304018
IUPAC Name(2Z)-6-[5,12-bis(acetyloxy)-9-hydroxy-2,6,6,11,15-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-14-yl]-2-methylhept-2-enoic acid
Traditional Name(2Z)-6-[5,12-bis(acetyloxy)-9-hydroxy-2,6,6,11,15-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-14-yl]-2-methylhept-2-enoic acid
CAS Registry Number86377-49-3
SMILES
CC(CC\C=C(\C)C(O)=O)C1CC(OC(C)=O)C2(C)C3=C(CCC12C)C1(C)CCC(OC(C)=O)C(C)(C)C1CC3O
InChI Identifier
InChI=1S/C34H52O7/c1-19(11-10-12-20(2)30(38)39)24-17-28(41-22(4)36)34(9)29-23(13-16-33(24,34)8)32(7)15-14-27(40-21(3)35)31(5,6)26(32)18-25(29)37/h12,19,24-28,37H,10-11,13-18H2,1-9H3,(H,38,39)/b20-12-
InChI KeyDIXZQXARJMRUPX-NDENLUEZSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as scalarane sesterterpenoids. These are sesterterpenoids with a structure based on the scalarane backbone. Scalarane is a tetracyclic compound, which is similar the homoandrostane with five methyl groups at the 4-, 4-, 8-, 17-, 17a-positions.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesterterpenoids
Direct ParentScalarane sesterterpenoids
Alternative Parents
Substituents
  • Scalarane sesterterpenoid
  • Ether
  • Dialkyl ether
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point114 - 117 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.001 g/LALOGPS
logP5.97ALOGPS
logP5.32ChemAxon
logS-5.8ALOGPS
pKa (Strongest Acidic)4.62ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area110.13 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity157.6 m³·mol⁻¹ChemAxon
Polarizability65.48 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+230.50931661259
DarkChem[M-H]-223.88731661259
DeepCCS[M-2H]-263.0630932474
DeepCCS[M+Na]+238.22430932474
AllCCS[M+H]+236.432859911
AllCCS[M+H-H2O]+235.232859911
AllCCS[M+NH4]+237.432859911
AllCCS[M+Na]+237.732859911
AllCCS[M-H]-231.732859911
AllCCS[M+Na-2H]-235.432859911
AllCCS[M+HCOO]-239.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Ganoderic acid WCC(CC\C=C(\C)C(O)=O)C1CC(OC(C)=O)C2(C)C3=C(CCC12C)C1(C)CCC(OC(C)=O)C(C)(C)C1CC3O4487.2Standard polar33892256
Ganoderic acid WCC(CC\C=C(\C)C(O)=O)C1CC(OC(C)=O)C2(C)C3=C(CCC12C)C1(C)CCC(OC(C)=O)C(C)(C)C1CC3O3671.6Standard non polar33892256
Ganoderic acid WCC(CC\C=C(\C)C(O)=O)C1CC(OC(C)=O)C2(C)C3=C(CCC12C)C1(C)CCC(OC(C)=O)C(C)(C)C1CC3O3998.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Ganoderic acid W,1TMS,isomer #1CC(=O)OC1CCC2(C)C3=C(C(O)CC2C1(C)C)C1(C)C(OC(C)=O)CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C)C1(C)CC33981.1Semi standard non polar33892256
Ganoderic acid W,1TMS,isomer #2CC(=O)OC1CCC2(C)C3=C(C(O[Si](C)(C)C)CC2C1(C)C)C1(C)C(OC(C)=O)CC(C(C)CC/C=C(/C)C(=O)O)C1(C)CC34102.5Semi standard non polar33892256
Ganoderic acid W,2TMS,isomer #1CC(=O)OC1CCC2(C)C3=C(C(O[Si](C)(C)C)CC2C1(C)C)C1(C)C(OC(C)=O)CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C)C1(C)CC33895.3Semi standard non polar33892256
Ganoderic acid W,1TBDMS,isomer #1CC(=O)OC1CCC2(C)C3=C(C(O)CC2C1(C)C)C1(C)C(OC(C)=O)CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C(C)(C)C)C1(C)CC34226.7Semi standard non polar33892256
Ganoderic acid W,1TBDMS,isomer #2CC(=O)OC1CCC2(C)C3=C(C(O[Si](C)(C)C(C)(C)C)CC2C1(C)C)C1(C)C(OC(C)=O)CC(C(C)CC/C=C(/C)C(=O)O)C1(C)CC34351.1Semi standard non polar33892256
Ganoderic acid W,2TBDMS,isomer #1CC(=O)OC1CCC2(C)C3=C(C(O[Si](C)(C)C(C)(C)C)CC2C1(C)C)C1(C)C(OC(C)=O)CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C(C)(C)C)C1(C)CC34382.4Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid W GC-MS (Non-derivatized) - 70eV, Positivesplash10-06tr-0101950000-4b516c35959959016b292017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid W GC-MS (1 TMS) - 70eV, Positivesplash10-00c0-2011194000-6aaf680560f13684eef52017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid W GC-MS ("Ganoderic acid W,1TMS,#1" TMS) - 70eV, PositiveNot Available2021-10-14Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid W GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid W GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid W GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid W GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid W GC-MS (TBDMS_2_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid W 10V, Positive-QTOFsplash10-0c0r-0000290000-7b812065cae2caa7a9622016-06-20Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid W 20V, Positive-QTOFsplash10-08fs-0000980000-d9d6448a7d132577d1272016-06-20Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid W 40V, Positive-QTOFsplash10-0159-1101920000-9adcb79714f5b79c0d232016-06-20Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid W 10V, Negative-QTOFsplash10-024i-0000090000-bc1fecbd2bfe9d8508982016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid W 20V, Negative-QTOFsplash10-06vi-2000390000-903b1594c25178b51f102016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid W 40V, Negative-QTOFsplash10-052r-6000940000-71eb2bde9f215de84f622016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid W 10V, Positive-QTOFsplash10-00dj-4003980000-0ead7831aca2a1e261f02021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid W 20V, Positive-QTOFsplash10-0005-9000520000-e45449e35dbd7df86bdf2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid W 40V, Positive-QTOFsplash10-014l-9004200000-79706c76e85f760a60462021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid W 10V, Negative-QTOFsplash10-00di-3000090000-52fe267e83524c7bae532021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid W 20V, Negative-QTOFsplash10-0ar0-6000890000-c0aa86eb4b0a7be8a2282021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid W 40V, Negative-QTOFsplash10-0005-9000120000-52ced0fc935f49e6312e2021-09-23Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB000627
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131750878
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.