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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:53:37 UTC
Update Date2022-03-07 02:53:35 UTC
HMDB IDHMDB0033079
Secondary Accession Numbers
  • HMDB33079
Metabolite Identification
Common NameGanoderic acid V
DescriptionGanoderic acid V, also known as ganoderate V, belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. Ganoderic acid V is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563862349
Synonyms
ValueSource
Ganoderate VGenerator
15-Acetoxy-7-hydroxy-3-oxolanosta-8,24-dien-26-Oic acidHMDB
(2Z)-6-[12-(Acetyloxy)-9-hydroxy-2,6,6,11,15-pentamethyl-5-oxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-14-yl]-2-methylhept-2-enoateGenerator
Chemical FormulaC32H48O6
Average Molecular Weight528.7199
Monoisotopic Molecular Weight528.345089268
IUPAC Name(2Z)-6-[12-(acetyloxy)-9-hydroxy-2,6,6,11,15-pentamethyl-5-oxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-14-yl]-2-methylhept-2-enoic acid
Traditional Name(2Z)-6-[12-(acetyloxy)-9-hydroxy-2,6,6,11,15-pentamethyl-5-oxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-14-yl]-2-methylhept-2-enoic acid
CAS Registry Number86377-50-6
SMILES
CC(CC\C=C(\C)C(O)=O)C1CC(OC(C)=O)C2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1CC3O
InChI Identifier
InChI=1S/C32H48O6/c1-18(10-9-11-19(2)28(36)37)22-16-26(38-20(3)33)32(8)27-21(12-15-31(22,32)7)30(6)14-13-25(35)29(4,5)24(30)17-23(27)34/h11,18,22-24,26,34H,9-10,12-17H2,1-8H3,(H,36,37)/b19-11-
InChI KeyKUXMNDKEYFTKBS-ODLFYWEKSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTriterpenoids
Direct ParentTriterpenoids
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0017 g/LALOGPS
logP5.83ALOGPS
logP5.44ChemAxon
logS-5.5ALOGPS
pKa (Strongest Acidic)4.62ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area100.9 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity147.62 m³·mol⁻¹ChemAxon
Polarizability60.11 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+220.14731661259
DarkChem[M-H]-216.79831661259
DeepCCS[M-2H]-254.81630932474
DeepCCS[M+Na]+230.23930932474
AllCCS[M+H]+226.932859911
AllCCS[M+H-H2O]+225.532859911
AllCCS[M+NH4]+228.132859911
AllCCS[M+Na]+228.532859911
AllCCS[M-H]-227.332859911
AllCCS[M+Na-2H]-230.332859911
AllCCS[M+HCOO]-233.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Ganoderic acid VCC(CC\C=C(\C)C(O)=O)C1CC(OC(C)=O)C2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1CC3O4207.4Standard polar33892256
Ganoderic acid VCC(CC\C=C(\C)C(O)=O)C1CC(OC(C)=O)C2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1CC3O3580.3Standard non polar33892256
Ganoderic acid VCC(CC\C=C(\C)C(O)=O)C1CC(OC(C)=O)C2(C)C3=C(CCC12C)C1(C)CCC(=O)C(C)(C)C1CC3O4002.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Ganoderic acid V,1TMS,isomer #1CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C)C2(C)CCC3=C(C(O)CC4C(C)(C)C(=O)CCC34C)C12C3993.1Semi standard non polar33892256
Ganoderic acid V,1TMS,isomer #2CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O)C2(C)CCC3=C(C(O[Si](C)(C)C)CC4C(C)(C)C(=O)CCC34C)C12C4086.4Semi standard non polar33892256
Ganoderic acid V,1TMS,isomer #3CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O)C2(C)CCC3=C(C(O)CC4C(C)(C)C(O[Si](C)(C)C)=CCC34C)C12C4044.9Semi standard non polar33892256
Ganoderic acid V,2TMS,isomer #1CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C)C2(C)CCC3=C(C(O[Si](C)(C)C)CC4C(C)(C)C(=O)CCC34C)C12C3889.8Semi standard non polar33892256
Ganoderic acid V,2TMS,isomer #2CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C)C2(C)CCC3=C(C(O)CC4C(C)(C)C(O[Si](C)(C)C)=CCC34C)C12C3887.9Semi standard non polar33892256
Ganoderic acid V,2TMS,isomer #3CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O)C2(C)CCC3=C(C(O[Si](C)(C)C)CC4C(C)(C)C(O[Si](C)(C)C)=CCC34C)C12C3924.0Semi standard non polar33892256
Ganoderic acid V,3TMS,isomer #1CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C)C2(C)CCC3=C(C(O[Si](C)(C)C)CC4C(C)(C)C(O[Si](C)(C)C)=CCC34C)C12C3763.1Semi standard non polar33892256
Ganoderic acid V,3TMS,isomer #1CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C)C2(C)CCC3=C(C(O[Si](C)(C)C)CC4C(C)(C)C(O[Si](C)(C)C)=CCC34C)C12C3665.3Standard non polar33892256
Ganoderic acid V,1TBDMS,isomer #1CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C(C)(C)C)C2(C)CCC3=C(C(O)CC4C(C)(C)C(=O)CCC34C)C12C4235.9Semi standard non polar33892256
Ganoderic acid V,1TBDMS,isomer #2CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O)C2(C)CCC3=C(C(O[Si](C)(C)C(C)(C)C)CC4C(C)(C)C(=O)CCC34C)C12C4321.4Semi standard non polar33892256
Ganoderic acid V,1TBDMS,isomer #3CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O)C2(C)CCC3=C(C(O)CC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)=CCC34C)C12C4270.5Semi standard non polar33892256
Ganoderic acid V,2TBDMS,isomer #1CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C(C)(C)C)C2(C)CCC3=C(C(O[Si](C)(C)C(C)(C)C)CC4C(C)(C)C(=O)CCC34C)C12C4364.1Semi standard non polar33892256
Ganoderic acid V,2TBDMS,isomer #2CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C(C)(C)C)C2(C)CCC3=C(C(O)CC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)=CCC34C)C12C4339.9Semi standard non polar33892256
Ganoderic acid V,2TBDMS,isomer #3CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O)C2(C)CCC3=C(C(O[Si](C)(C)C(C)(C)C)CC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)=CCC34C)C12C4376.3Semi standard non polar33892256
Ganoderic acid V,3TBDMS,isomer #1CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C(C)(C)C)C2(C)CCC3=C(C(O[Si](C)(C)C(C)(C)C)CC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)=CCC34C)C12C4453.1Semi standard non polar33892256
Ganoderic acid V,3TBDMS,isomer #1CC(=O)OC1CC(C(C)CC/C=C(/C)C(=O)O[Si](C)(C)C(C)(C)C)C2(C)CCC3=C(C(O[Si](C)(C)C(C)(C)C)CC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)=CCC34C)C12C4174.4Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS (Non-derivatized) - 70eV, Positivesplash10-01ox-1222940000-9237af402f8c64e691a02017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS (2 TMS) - 70eV, Positivesplash10-0a4i-3111179000-5cada900279e24740eda2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS (TMS_2_2) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS (TMS_2_3) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS (TBDMS_1_3) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS (TBDMS_2_1) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS (TBDMS_2_2) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS (TBDMS_2_3) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ganoderic acid V GC-MS ("Ganoderic acid V,1TMS,#1" TMS) - 70eV, PositiveNot Available2021-10-14Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid V 10V, Positive-QTOFsplash10-0400-0000960000-023cb8e77e85b492006b2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid V 20V, Positive-QTOFsplash10-014i-0000910000-f41e3db78ca9d5aad2a42016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid V 40V, Positive-QTOFsplash10-00dr-1120900000-aeb5685b08d99d0e16e22016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid V 10V, Negative-QTOFsplash10-004i-1000690000-3c397538e7fccc84fb1d2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid V 20V, Negative-QTOFsplash10-0699-2000930000-641d9e552e039a3379242016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid V 40V, Negative-QTOFsplash10-00kf-6000900000-d62dd2ba439066fe24c12016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid V 10V, Positive-QTOFsplash10-004i-4102590000-70a35f6da34af40ae15a2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid V 20V, Positive-QTOFsplash10-052e-9000510000-2b9963e29f236af43c7e2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid V 40V, Positive-QTOFsplash10-00kf-9005000000-579143f0a87b0cd3e8db2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid V 10V, Negative-QTOFsplash10-004i-3000290000-b661922673267beae50e2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid V 20V, Negative-QTOFsplash10-0a59-2000900000-a09a316f9ab273a8789c2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ganoderic acid V 40V, Negative-QTOFsplash10-00ke-9000500000-d040dd503dbccfd462d72021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB011074
KNApSAcK IDC00023850
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131751369
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.