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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 17:53:45 UTC

Update Date

2022-03-07 02:53:36 UTC

HMDB ID

HMDB0033104

Secondary Accession Numbers

HMDB33104

Metabolite Identification

Common Name

Calamensesquiterpinenol

Description

Calamensesquiterpinenol, also known as calamenone, belongs to the class of organic compounds known as cyclic alcohols and derivatives. These are organic compounds containing an aliphatic ring substituted with at least one hydroxyl group. Calamensesquiterpinenol is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, calamensesquiterpinenol has been detected, but not quantified in, herbs and spices and root vegetables. This could make calamensesquiterpinenol a potential biomarker for the consumption of these foods.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0033104
     RDKit          3D
Calamensesquiterpinenol
 41 43  0  0  0  0  0  0  0  0999 V2000
   -2.8359   -1.4438    0.3101 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8908   -0.9324   -0.7598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4693    0.3671   -1.2724 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3532    1.4075   -1.1111 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6380    0.8590    0.1114 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6511    1.5315    0.3996 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6422    1.9165    1.8860 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8626    2.8184   -0.3621 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8444    0.6858    0.1923 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9361    1.2025    0.3605 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7854   -0.7502   -0.2071 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0540   -1.2223   -0.8229 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3401   -1.5373    0.9869 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1800   -1.4551    0.9771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6260   -2.7599    0.6787 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5448   -0.5964   -0.1986 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5892   -0.8678   -1.1600 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9156   -2.5366    0.2447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8765   -1.0414    0.1331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5587   -1.1085    1.3198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7804   -1.6959   -1.5632 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3917    0.6667   -0.7749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6904    0.2114   -2.3490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8343    2.3687   -0.9343 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7496    1.3399   -2.0275 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3801    0.9658    0.9571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0869    2.7720    1.9687 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2417    1.0986    2.4956 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6134    2.2856    2.2149 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9729    3.0267   -0.3708 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4135    3.6597    0.2005 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5495    2.7827   -1.4012 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7577   -1.6962   -0.1108 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5429   -0.3259   -1.3038 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8548   -1.9938   -1.6088 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6700   -1.0220    1.9143 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7101   -2.5690    1.0177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5994   -1.1182    1.9245 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8370   -3.2679    1.4850 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6872   -0.1235   -1.9505 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5197   -1.9020   -1.4899 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  6  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 16  2  1  0
 16  5  1  0
 17 11  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  2 21  1  0
  3 22  1  0
  3 23  1  0
  4 24  1  0
  4 25  1  0
  5 26  1  0
  7 27  1  0
  7 28  1  0
  7 29  1  0
  8 30  1  0
  8 31  1  0
  8 32  1  0
 12 33  1  0
 12 34  1  0
 12 35  1  0
 13 36  1  0
 13 37  1  0
 14 38  1  0
 15 39  1  0
 17 40  1  0
 17 41  1  0
M  END


  Mrv0541 02241218412D          

 17 19  0  0  0  0            999 V2000
   -0.4895    0.5534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4895   -0.2715    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2241   -0.6840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9363   -0.2715    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9363    0.5534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2241    0.9644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1884    1.6794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6365    1.6794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6513    0.9644    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7613   -0.2715    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9363   -1.0965    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4895   -1.0965    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2746    0.8091    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7613    0.1409    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2746   -0.5287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5289   -1.3138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0724   -1.6794    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  6  1  0  0  0  0
  1 13  1  0  0  0  0
  2  3  1  0  0  0  0
  2 12  1  0  0  0  0
  2 15  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4 10  1  0  0  0  0
  4 11  1  0  0  0  0
  5  6  1  0  0  0  0
  5  9  2  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
 11 12  1  0  0  0  0
 12 17  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0033104

> <DATABASE_NAME>
hmdb

> <SMILES>
CC1CCC2C11CC(C)(CC1O)C(=O)C2(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O2/c1-9-5-6-10-13(2,3)12(17)14(4)7-11(16)15(9,10)8-14/h9-11,16H,5-8H2,1-4H3

> <INCHI_KEY>
DDUWSZBURGHFEW-UHFFFAOYSA-N

> <FORMULA>
C15H24O2

> <MOLECULAR_WEIGHT>
236.3499

> <EXACT_MASS>
236.177630012

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
27.23387744341015

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
10-hydroxy-2,6,6,8-tetramethyltricyclo[6.2.1.0¹,⁵]undecan-7-one

> <ALOGPS_LOGP>
2.65

> <JCHEM_LOGP>
3.1336056269999997

> <ALOGPS_LOGS>
-3.33

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.649428316063194

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9521400545539596

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
67.0314

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.12e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
10-hydroxy-2,6,6,8-tetramethyltricyclo[6.2.1.0¹,⁵]undecan-7-one

> <JCHEM_VEBER_RULE>
1

$$$$

HMDB0033104
     RDKit          3D
Calamensesquiterpinenol
 41 43  0  0  0  0  0  0  0  0999 V2000
   -2.8359   -1.4438    0.3101 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8908   -0.9324   -0.7598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4693    0.3671   -1.2724 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3532    1.4075   -1.1111 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6380    0.8590    0.1114 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6511    1.5315    0.3996 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6422    1.9165    1.8860 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8626    2.8184   -0.3621 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8444    0.6858    0.1923 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9361    1.2025    0.3605 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7854   -0.7502   -0.2071 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0540   -1.2223   -0.8229 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3401   -1.5373    0.9869 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1800   -1.4551    0.9771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6260   -2.7599    0.6787 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5448   -0.5964   -0.1986 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5892   -0.8678   -1.1600 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9156   -2.5366    0.2447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8765   -1.0414    0.1331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5587   -1.1085    1.3198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7804   -1.6959   -1.5632 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3917    0.6667   -0.7749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6904    0.2114   -2.3490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8343    2.3687   -0.9343 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7496    1.3399   -2.0275 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3801    0.9658    0.9571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0869    2.7720    1.9687 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2417    1.0986    2.4956 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6134    2.2856    2.2149 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9729    3.0267   -0.3708 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4135    3.6597    0.2005 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5495    2.7827   -1.4012 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7577   -1.6962   -0.1108 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5429   -0.3259   -1.3038 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8548   -1.9938   -1.6088 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6700   -1.0220    1.9143 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7101   -2.5690    1.0177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5994   -1.1182    1.9245 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8370   -3.2679    1.4850 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6872   -0.1235   -1.9505 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5197   -1.9020   -1.4899 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  6  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 16  2  1  0
 16  5  1  0
 17 11  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  2 21  1  0
  3 22  1  0
  3 23  1  0
  4 24  1  0
  4 25  1  0
  5 26  1  0
  7 27  1  0
  7 28  1  0
  7 29  1  0
  8 30  1  0
  8 31  1  0
  8 32  1  0
 12 33  1  0
 12 34  1  0
 12 35  1  0
 13 36  1  0
 13 37  1  0
 14 38  1  0
 15 39  1  0
 17 40  1  0
 17 41  1  0
M  END

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      -0.914   1.033   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.914  -0.507   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.418  -1.277   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.748  -0.507   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.748   1.033   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.418   1.800   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.352   3.135   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.188   3.135   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       3.082   1.800   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       3.288  -0.507   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.748  -2.047   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.914  -2.047   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.379   1.510   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.288   0.263   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.379  -0.987   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.854  -2.452   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -2.002  -3.135   0.000  0.00  0.00           O+0
CONECT    1    2    6   13                                                  
CONECT    2    1    3   12   15                                             
CONECT    3    2    4                                                       
CONECT    4    3    5   10   11                                             
CONECT    5    4    6    9                                                  
CONECT    6    1    5    7    8                                             
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    5                                                            
CONECT   10    4                                                            
CONECT   11    4   12                                                       
CONECT   12    2   11   17                                                  
CONECT   13    1   14                                                       
CONECT   14   13   15                                                       
CONECT   15    2   14   16                                                  
CONECT   16   15                                                            
CONECT   17   12                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   38    0
END

COMPND    HMDB0033104
HETATM    1  C1  UNL     1      -2.836  -1.444   0.310  1.00  0.00           C  
HETATM    2  C2  UNL     1      -1.891  -0.932  -0.760  1.00  0.00           C  
HETATM    3  C3  UNL     1      -2.469   0.367  -1.272  1.00  0.00           C  
HETATM    4  C4  UNL     1      -1.353   1.408  -1.111  1.00  0.00           C  
HETATM    5  C5  UNL     1      -0.638   0.859   0.111  1.00  0.00           C  
HETATM    6  C6  UNL     1       0.651   1.532   0.400  1.00  0.00           C  
HETATM    7  C7  UNL     1       0.642   1.916   1.886  1.00  0.00           C  
HETATM    8  C8  UNL     1       0.863   2.818  -0.362  1.00  0.00           C  
HETATM    9  C9  UNL     1       1.844   0.686   0.192  1.00  0.00           C  
HETATM   10  O1  UNL     1       2.936   1.202   0.360  1.00  0.00           O  
HETATM   11  C10 UNL     1       1.785  -0.750  -0.207  1.00  0.00           C  
HETATM   12  C11 UNL     1       3.054  -1.222  -0.823  1.00  0.00           C  
HETATM   13  C12 UNL     1       1.340  -1.537   0.987  1.00  0.00           C  
HETATM   14  C13 UNL     1      -0.180  -1.455   0.977  1.00  0.00           C  
HETATM   15  O2  UNL     1      -0.626  -2.760   0.679  1.00  0.00           O  
HETATM   16  C14 UNL     1      -0.545  -0.596  -0.199  1.00  0.00           C  
HETATM   17  C15 UNL     1       0.589  -0.868  -1.160  1.00  0.00           C  
HETATM   18  H1  UNL     1      -2.916  -2.537   0.245  1.00  0.00           H  
HETATM   19  H2  UNL     1      -3.877  -1.041   0.133  1.00  0.00           H  
HETATM   20  H3  UNL     1      -2.559  -1.108   1.320  1.00  0.00           H  
HETATM   21  H4  UNL     1      -1.780  -1.696  -1.563  1.00  0.00           H  
HETATM   22  H5  UNL     1      -3.392   0.667  -0.775  1.00  0.00           H  
HETATM   23  H6  UNL     1      -2.690   0.211  -2.349  1.00  0.00           H  
HETATM   24  H7  UNL     1      -1.834   2.369  -0.934  1.00  0.00           H  
HETATM   25  H8  UNL     1      -0.750   1.340  -2.027  1.00  0.00           H  
HETATM   26  H9  UNL     1      -1.380   0.966   0.957  1.00  0.00           H  
HETATM   27  H10 UNL     1      -0.087   2.772   1.969  1.00  0.00           H  
HETATM   28  H11 UNL     1       0.242   1.099   2.496  1.00  0.00           H  
HETATM   29  H12 UNL     1       1.613   2.286   2.215  1.00  0.00           H  
HETATM   30  H13 UNL     1       1.973   3.027  -0.371  1.00  0.00           H  
HETATM   31  H14 UNL     1       0.413   3.660   0.201  1.00  0.00           H  
HETATM   32  H15 UNL     1       0.549   2.783  -1.401  1.00  0.00           H  
HETATM   33  H16 UNL     1       3.758  -1.696  -0.111  1.00  0.00           H  
HETATM   34  H17 UNL     1       3.543  -0.326  -1.304  1.00  0.00           H  
HETATM   35  H18 UNL     1       2.855  -1.994  -1.609  1.00  0.00           H  
HETATM   36  H19 UNL     1       1.670  -1.022   1.914  1.00  0.00           H  
HETATM   37  H20 UNL     1       1.710  -2.569   1.018  1.00  0.00           H  
HETATM   38  H21 UNL     1      -0.599  -1.118   1.925  1.00  0.00           H  
HETATM   39  H22 UNL     1      -0.837  -3.268   1.485  1.00  0.00           H  
HETATM   40  H23 UNL     1       0.687  -0.124  -1.950  1.00  0.00           H  
HETATM   41  H24 UNL     1       0.520  -1.902  -1.490  1.00  0.00           H  
CONECT    1    2   18   19   20
CONECT    2    3   16   21
CONECT    3    4   22   23
CONECT    4    5   24   25
CONECT    5    6   16   26
CONECT    6    7    8    9
CONECT    7   27   28   29
CONECT    8   30   31   32
CONECT    9   10   10   11
CONECT   11   12   13   17
CONECT   12   33   34   35
CONECT   13   14   36   37
CONECT   14   15   16   38
CONECT   15   39
CONECT   16   17
CONECT   17   40   41
END

HMDB0033104
     RDKit          3D
Calamensesquiterpinenol
 41 43  0  0  0  0  0  0  0  0999 V2000
   -2.8359   -1.4438    0.3101 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8908   -0.9324   -0.7598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4693    0.3671   -1.2724 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3532    1.4075   -1.1111 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6380    0.8590    0.1114 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6511    1.5315    0.3996 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6422    1.9165    1.8860 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8626    2.8184   -0.3621 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8444    0.6858    0.1923 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9361    1.2025    0.3605 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7854   -0.7502   -0.2071 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0540   -1.2223   -0.8229 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3401   -1.5373    0.9869 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1800   -1.4551    0.9771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6260   -2.7599    0.6787 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5448   -0.5964   -0.1986 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5892   -0.8678   -1.1600 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9156   -2.5366    0.2447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8765   -1.0414    0.1331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5587   -1.1085    1.3198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7804   -1.6959   -1.5632 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3917    0.6667   -0.7749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6904    0.2114   -2.3490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8343    2.3687   -0.9343 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7496    1.3399   -2.0275 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3801    0.9658    0.9571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0869    2.7720    1.9687 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2417    1.0986    2.4956 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6134    2.2856    2.2149 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9729    3.0267   -0.3708 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4135    3.6597    0.2005 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5495    2.7827   -1.4012 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7577   -1.6962   -0.1108 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5429   -0.3259   -1.3038 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8548   -1.9938   -1.6088 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6700   -1.0220    1.9143 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7101   -2.5690    1.0177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5994   -1.1182    1.9245 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8370   -3.2679    1.4850 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6872   -0.1235   -1.9505 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5197   -1.9020   -1.4899 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  6  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 16  2  1  0
 16  5  1  0
 17 11  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  2 21  1  0
  3 22  1  0
  3 23  1  0
  4 24  1  0
  4 25  1  0
  5 26  1  0
  7 27  1  0
  7 28  1  0
  7 29  1  0
  8 30  1  0
  8 31  1  0
  8 32  1  0
 12 33  1  0
 12 34  1  0
 12 35  1  0
 13 36  1  0
 13 37  1  0
 14 38  1  0
 15 39  1  0
 17 40  1  0
 17 41  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
10-Hydroxy-2,6,6,8-tetramethyltricyclo[6.2.1.01,5]undecan-7-one	HMDB
Calamenone	HMDB

Chemical Formula

C₁₅H₂₄O₂

Average Molecular Weight

236.3499

Monoisotopic Molecular Weight

236.177630012

IUPAC Name

10-hydroxy-2,6,6,8-tetramethyltricyclo[6.2.1.0¹,⁵]undecan-7-one

Traditional Name

10-hydroxy-2,6,6,8-tetramethyltricyclo[6.2.1.0¹,⁵]undecan-7-one

CAS Registry Number

156158-90-6

SMILES

CC1CCC2C11CC(C)(CC1O)C(=O)C2(C)C

InChI Identifier

InChI=1S/C15H24O2/c1-9-5-6-10-13(2,3)12(17)14(4)7-11(16)15(9,10)8-14/h9-11,16H,5-8H2,1-4H3

InChI Key

DDUWSZBURGHFEW-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic alcohols and derivatives. These are organic compounds containing an aliphatic ring substituted with at least one hydroxyl group.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Alcohols and polyols

Direct Parent

Cyclic alcohols and derivatives

Alternative Parents

Substituents

Cyclic alcohol
Secondary alcohol
Ketone
Organic oxide
Hydrocarbon derivative
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cell membrane (HMDB: HMDB0033104)

Cellular substructure

Extracellular (HMDB: HMDB0033104)
Membrane (HMDB: HMDB0033104)

Route of exposure

Enteral

Ingestion (HMDB: HMDB0033104)

Source

Endogenous

Endogenous (HMDB: HMDB0033104)

Plant

Plant (HMDB: HMDB0033104)

Exogenous

Food

Food (HMDB: HMDB0033104)

Herb and spice

Herbs and Spices (FooDB: FOOD00866)

Vegetable

Root vegetable

Root vegetables (FooDB: FOOD00873)

Process

Naturally occurring process

Biological process

Cellular process

Cell signaling (HMDB: HMDB0033104)

Role

Biological role

Membrane stabilizer (HMDB: HMDB0033104)

Nutrient

Nutrient (HMDB: HMDB0033104)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0033104)

Emulsifier (HMDB: HMDB0033104)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.11 g/L	ALOGPS
logP	2.65	ALOGPS
logP	3.13	ChemAxon
logS	-3.3	ALOGPS
pKa (Strongest Acidic)	14.65	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	67.03 m³·mol⁻¹	ChemAxon
Polarizability	27.23 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	158.202	31661259
DarkChem	[M-H]-	152.652	31661259
DeepCCS	[M-2H]-	192.747	30932474
DeepCCS	[M+Na]+	168.312	30932474
AllCCS	[M+H]+	155.7	32859911
AllCCS	[M+H-H2O]+	152.2	32859911
AllCCS	[M+NH4]+	159.0	32859911
AllCCS	[M+Na]+	160.0	32859911
AllCCS	[M-H]-	162.8	32859911
AllCCS	[M+Na-2H]-	163.0	32859911
AllCCS	[M+HCOO]-	163.4	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Calamensesquiterpinenol	CC1CCC2C11CC(C)(CC1O)C(=O)C2(C)C	2467.9	Standard polar	33892256
Calamensesquiterpinenol	CC1CCC2C11CC(C)(CC1O)C(=O)C2(C)C	1719.3	Standard non polar	33892256
Calamensesquiterpinenol	CC1CCC2C11CC(C)(CC1O)C(=O)C2(C)C	1736.6	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Calamensesquiterpinenol,1TMS,isomer #1	CC1CCC2C(C)(C)C(=O)C3(C)CC(O[Si](C)(C)C)C12C3	1834.3	Semi standard non polar	33892256
Calamensesquiterpinenol,1TBDMS,isomer #1	CC1CCC2C(C)(C)C(=O)C3(C)CC(O[Si](C)(C)C(C)(C)C)C12C3	2102.7	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Calamensesquiterpinenol GC-MS (Non-derivatized) - 70eV, Positive	splash10-0a4l-6490000000-11c6ec2eb6a31badf171	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Calamensesquiterpinenol GC-MS (1 TMS) - 70eV, Positive	splash10-006x-5290000000-13366b12b744b486d243	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Calamensesquiterpinenol GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Calamensesquiterpinenol 10V, Positive-QTOF	splash10-014r-0090000000-55664f6bf06340849530	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Calamensesquiterpinenol 20V, Positive-QTOF	splash10-014r-1490000000-2558b5705a2419a3bb96	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Calamensesquiterpinenol 40V, Positive-QTOF	splash10-0zfv-8930000000-dbd42febf527da6d7cd3	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Calamensesquiterpinenol 10V, Negative-QTOF	splash10-000i-0090000000-661b5b21756106a26259	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Calamensesquiterpinenol 20V, Negative-QTOF	splash10-000i-0090000000-3e4e222ab567fb09f100	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Calamensesquiterpinenol 40V, Negative-QTOF	splash10-014i-5790000000-1dccf8470860aca54f48	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Calamensesquiterpinenol 10V, Negative-QTOF	splash10-000i-0090000000-c0031dc201eac6b6350a	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Calamensesquiterpinenol 20V, Negative-QTOF	splash10-000i-0090000000-c0031dc201eac6b6350a	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Calamensesquiterpinenol 40V, Negative-QTOF	splash10-000i-1090000000-d921cfee5fad47c89ee9	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Calamensesquiterpinenol 10V, Positive-QTOF	splash10-00kr-0090000000-62abff0d50ed7be4c17e	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Calamensesquiterpinenol 20V, Positive-QTOF	splash10-000i-1390000000-6c04b44f1aea560a0c36	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Calamensesquiterpinenol 40V, Positive-QTOF	splash10-052o-8970000000-037ffbcaad490c852a7b	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB011100

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

75250012

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

Showing metabocard for Calamensesquiterpinenol (HMDB0033104)

MOL for HMDB0033104 (Calamensesquiterpinenol)

3D MOL for HMDB0033104 (Calamensesquiterpinenol)

3D SDF for HMDB0033104 (Calamensesquiterpinenol)

3D-SDF for HMDB0033104 (Calamensesquiterpinenol)

PDB for HMDB0033104 (Calamensesquiterpinenol)

3D PDB for HMDB0033104 (Calamensesquiterpinenol)

SMILES for HMDB0033104 (Calamensesquiterpinenol)

INCHI for HMDB0033104 (Calamensesquiterpinenol)

Structure for HMDB0033104 (Calamensesquiterpinenol)

3D Structure for HMDB0033104 (Calamensesquiterpinenol)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra