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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 18:51:44 UTC
Update Date2022-03-07 02:53:58 UTC
HMDB IDHMDB0034077
Secondary Accession Numbers
  • HMDB34077
Metabolite Identification
Common NameWithaperuvin C
DescriptionWithaperuvin C belongs to the class of organic compounds known as withanolides and derivatives. These are c28 steroids structurally characterized by an ergostane skeleton usually functionalized at carbons 1, 22 and 26 to form a lactone ring. Withaperuvin C is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563862506
Synonyms
ValueSource
(20S,22R)-6b,14,17b,20-Tetrahydroxy-1-oxowitha-2,4,24-trienolideHMDB
Chemical FormulaC28H38O7
Average Molecular Weight486.5971
Monoisotopic Molecular Weight486.26175357
IUPAC Name6-(1-hydroxy-1-{8,11,14-trihydroxy-2,15-dimethyl-3-oxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadeca-4,6-dien-14-yl}ethyl)-3,4-dimethyl-5,6-dihydro-2H-pyran-2-one
Traditional Name6-(1-hydroxy-1-{8,11,14-trihydroxy-2,15-dimethyl-3-oxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadeca-4,6-dien-14-yl}ethyl)-3,4-dimethyl-5,6-dihydropyran-2-one
CAS Registry Number81644-34-0
SMILES
CC1=C(C)C(=O)OC(C1)C(C)(O)C1(O)CCC2(O)C3CC(O)C4=CC=CC(=O)C4(C)C3CCC12C
InChI Identifier
InChI=1S/C28H38O7/c1-15-13-22(35-23(31)16(15)2)26(5,32)28(34)12-11-27(33)19-14-20(29)18-7-6-8-21(30)25(18,4)17(19)9-10-24(27,28)3/h6-8,17,19-20,22,29,32-34H,9-14H2,1-5H3
InChI KeyIBJZGHYOMSKIJB-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as withanolides and derivatives. These are c28 steroids structurally characterized by an ergostane skeleton usually functionalized at carbons 1, 22 and 26 to form a lactone ring.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassSteroid lactones
Direct ParentWithanolides and derivatives
Alternative Parents
Substituents
  • Withanolide-skeleton
  • 20-hydroxysteroid
  • 14-hydroxysteroid
  • 6-hydroxysteroid
  • Hydroxysteroid
  • 1-oxosteroid
  • Oxosteroid
  • 17-hydroxysteroid
  • Dihydropyranone
  • Pyran
  • Alpha,beta-unsaturated carboxylic ester
  • Tertiary alcohol
  • Enoate ester
  • Cyclic alcohol
  • Secondary alcohol
  • Carboxylic acid ester
  • Ketone
  • Lactone
  • Organoheterocyclic compound
  • Oxacycle
  • Polyol
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Carbonyl group
  • Alcohol
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organooxygen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point190 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.16 g/LALOGPS
logP2.05ALOGPS
logP2.13ChemAxon
logS-3.5ALOGPS
pKa (Strongest Acidic)12.71ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area124.29 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity131.4 m³·mol⁻¹ChemAxon
Polarizability52.38 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+213.96131661259
DarkChem[M-H]-202.59731661259
DeepCCS[M-2H]-245.52130932474
DeepCCS[M+Na]+220.94430932474
AllCCS[M+H]+215.432859911
AllCCS[M+H-H2O]+213.532859911
AllCCS[M+NH4]+217.132859911
AllCCS[M+Na]+217.632859911
AllCCS[M-H]-219.032859911
AllCCS[M+Na-2H]-221.032859911
AllCCS[M+HCOO]-223.332859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Withaperuvin CCC1=C(C)C(=O)OC(C1)C(C)(O)C1(O)CCC2(O)C3CC(O)C4=CC=CC(=O)C4(C)C3CCC12C4329.0Standard polar33892256
Withaperuvin CCC1=C(C)C(=O)OC(C1)C(C)(O)C1(O)CCC2(O)C3CC(O)C4=CC=CC(=O)C4(C)C3CCC12C3726.1Standard non polar33892256
Withaperuvin CCC1=C(C)C(=O)OC(C1)C(C)(O)C1(O)CCC2(O)C3CC(O)C4=CC=CC(=O)C4(C)C3CCC12C4253.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Withaperuvin C,1TMS,isomer #1CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C)C2(O)CCC3(O)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14224.6Semi standard non polar33892256
Withaperuvin C,1TMS,isomer #2CC1=C(C)C(=O)OC(C(C)(O)C2(O[Si](C)(C)C)CCC3(O)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14239.7Semi standard non polar33892256
Withaperuvin C,1TMS,isomer #3CC1=C(C)C(=O)OC(C(C)(O)C2(O)CCC3(O[Si](C)(C)C)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14227.2Semi standard non polar33892256
Withaperuvin C,1TMS,isomer #4CC1=C(C)C(=O)OC(C(C)(O)C2(O)CCC3(O)C4CC(O[Si](C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14199.0Semi standard non polar33892256
Withaperuvin C,2TMS,isomer #1CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C)C2(O[Si](C)(C)C)CCC3(O)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14251.1Semi standard non polar33892256
Withaperuvin C,2TMS,isomer #2CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C)C2(O)CCC3(O[Si](C)(C)C)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14225.0Semi standard non polar33892256
Withaperuvin C,2TMS,isomer #3CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C)C2(O)CCC3(O)C4CC(O[Si](C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14167.7Semi standard non polar33892256
Withaperuvin C,2TMS,isomer #4CC1=C(C)C(=O)OC(C(C)(O)C2(O[Si](C)(C)C)CCC3(O[Si](C)(C)C)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14237.1Semi standard non polar33892256
Withaperuvin C,2TMS,isomer #5CC1=C(C)C(=O)OC(C(C)(O)C2(O[Si](C)(C)C)CCC3(O)C4CC(O[Si](C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14174.6Semi standard non polar33892256
Withaperuvin C,2TMS,isomer #6CC1=C(C)C(=O)OC(C(C)(O)C2(O)CCC3(O[Si](C)(C)C)C4CC(O[Si](C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14165.0Semi standard non polar33892256
Withaperuvin C,3TMS,isomer #1CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C)C2(O[Si](C)(C)C)CCC3(O[Si](C)(C)C)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14198.9Semi standard non polar33892256
Withaperuvin C,3TMS,isomer #2CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C)C2(O[Si](C)(C)C)CCC3(O)C4CC(O[Si](C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14118.0Semi standard non polar33892256
Withaperuvin C,3TMS,isomer #3CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C)C2(O)CCC3(O[Si](C)(C)C)C4CC(O[Si](C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14084.0Semi standard non polar33892256
Withaperuvin C,3TMS,isomer #4CC1=C(C)C(=O)OC(C(C)(O)C2(O[Si](C)(C)C)CCC3(O[Si](C)(C)C)C4CC(O[Si](C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14087.4Semi standard non polar33892256
Withaperuvin C,4TMS,isomer #1CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C)C2(O[Si](C)(C)C)CCC3(O[Si](C)(C)C)C4CC(O[Si](C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14016.4Semi standard non polar33892256
Withaperuvin C,1TBDMS,isomer #1CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C(C)(C)C)C2(O)CCC3(O)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14450.1Semi standard non polar33892256
Withaperuvin C,1TBDMS,isomer #2CC1=C(C)C(=O)OC(C(C)(O)C2(O[Si](C)(C)C(C)(C)C)CCC3(O)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14461.8Semi standard non polar33892256
Withaperuvin C,1TBDMS,isomer #3CC1=C(C)C(=O)OC(C(C)(O)C2(O)CCC3(O[Si](C)(C)C(C)(C)C)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14448.4Semi standard non polar33892256
Withaperuvin C,1TBDMS,isomer #4CC1=C(C)C(=O)OC(C(C)(O)C2(O)CCC3(O)C4CC(O[Si](C)(C)C(C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14440.2Semi standard non polar33892256
Withaperuvin C,2TBDMS,isomer #1CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C(C)(C)C)C2(O[Si](C)(C)C(C)(C)C)CCC3(O)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14703.6Semi standard non polar33892256
Withaperuvin C,2TBDMS,isomer #2CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C(C)(C)C)C2(O)CCC3(O[Si](C)(C)C(C)(C)C)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14678.3Semi standard non polar33892256
Withaperuvin C,2TBDMS,isomer #3CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C(C)(C)C)C2(O)CCC3(O)C4CC(O[Si](C)(C)C(C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14627.6Semi standard non polar33892256
Withaperuvin C,2TBDMS,isomer #4CC1=C(C)C(=O)OC(C(C)(O)C2(O[Si](C)(C)C(C)(C)C)CCC3(O[Si](C)(C)C(C)(C)C)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14677.1Semi standard non polar33892256
Withaperuvin C,2TBDMS,isomer #5CC1=C(C)C(=O)OC(C(C)(O)C2(O[Si](C)(C)C(C)(C)C)CCC3(O)C4CC(O[Si](C)(C)C(C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14633.8Semi standard non polar33892256
Withaperuvin C,2TBDMS,isomer #6CC1=C(C)C(=O)OC(C(C)(O)C2(O)CCC3(O[Si](C)(C)C(C)(C)C)C4CC(O[Si](C)(C)C(C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14622.3Semi standard non polar33892256
Withaperuvin C,3TBDMS,isomer #1CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C(C)(C)C)C2(O[Si](C)(C)C(C)(C)C)CCC3(O[Si](C)(C)C(C)(C)C)C4CC(O)C5=CC=CC(=O)C5(C)C4CCC32C)C14859.7Semi standard non polar33892256
Withaperuvin C,3TBDMS,isomer #2CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C(C)(C)C)C2(O[Si](C)(C)C(C)(C)C)CCC3(O)C4CC(O[Si](C)(C)C(C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14804.4Semi standard non polar33892256
Withaperuvin C,3TBDMS,isomer #3CC1=C(C)C(=O)OC(C(C)(O[Si](C)(C)C(C)(C)C)C2(O)CCC3(O[Si](C)(C)C(C)(C)C)C4CC(O[Si](C)(C)C(C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14757.5Semi standard non polar33892256
Withaperuvin C,3TBDMS,isomer #4CC1=C(C)C(=O)OC(C(C)(O)C2(O[Si](C)(C)C(C)(C)C)CCC3(O[Si](C)(C)C(C)(C)C)C4CC(O[Si](C)(C)C(C)(C)C)C5=CC=CC(=O)C5(C)C4CCC32C)C14741.4Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Withaperuvin C GC-MS (Non-derivatized) - 70eV, Positivesplash10-014i-1869500000-e6697ee296d52b1e54302017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Withaperuvin C GC-MS (2 TMS) - 70eV, Positivesplash10-0670-3861439000-7651394e50c35034e1e82017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Withaperuvin C GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Withaperuvin C GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Withaperuvin C 10V, Positive-QTOFsplash10-014i-0002900000-c8896799c1f73fde6f842016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Withaperuvin C 20V, Positive-QTOFsplash10-0uxs-7143900000-c2244274f02e8ee8e7ba2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Withaperuvin C 40V, Positive-QTOFsplash10-0gi0-6192100000-f0ab2326eb5e9ed071532016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Withaperuvin C 10V, Negative-QTOFsplash10-000l-0102900000-19bc2465752873f11abd2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Withaperuvin C 20V, Negative-QTOFsplash10-014i-1934300000-d5cf35ef77882d2d730a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Withaperuvin C 40V, Negative-QTOFsplash10-014i-9304000000-f93d45ebde033e9eaea02016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Withaperuvin C 10V, Negative-QTOFsplash10-000i-0004900000-93cad0428936e7c164762021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Withaperuvin C 20V, Negative-QTOFsplash10-0297-2029500000-c5b2e434e0ece58a6aee2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Withaperuvin C 40V, Negative-QTOFsplash10-0fr6-9400100000-c3cb9bdd02b85a6e0c792021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Withaperuvin C 10V, Positive-QTOFsplash10-00kr-0000900000-cd03a1d0fe92d8f79f862021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Withaperuvin C 20V, Positive-QTOFsplash10-0f9w-8209200000-270b9ca2d5a0ef3d1eb02021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Withaperuvin C 40V, Positive-QTOFsplash10-0ug0-1923000000-fffa3514f64f0ad5412e2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB012336
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound14860927
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.