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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 19:34:55 UTC
Update Date2022-03-07 02:54:12 UTC
HMDB IDHMDB0034683
Secondary Accession Numbers
  • HMDB34683
Metabolite Identification
Common Name(3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol
Description(3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563862603
SynonymsNot Available
Chemical FormulaC30H50O4
Average Molecular Weight474.7156
Monoisotopic Molecular Weight474.370910088
IUPAC Name6-[5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-15-ol
Traditional Name6-[5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-9,10,14,14-tetramethyl-16-oxapentacyclo[13.2.2.0¹,¹³.0²,¹⁰.0⁵,⁹]nonadecan-15-ol
CAS Registry Number189031-58-1
SMILES
CC(C)(O)C1CCC(C)(O1)C1CCC2(C)C1CCC1C2(C)CCC2C(C)(C)C3(O)CCC12CO3
InChI Identifier
InChI=1S/C30H50O4/c1-24(2)21-11-14-27(6)22(29(21)16-17-30(24,32)33-18-29)9-8-19-20(10-13-26(19,27)5)28(7)15-12-23(34-28)25(3,4)31/h19-23,31-32H,8-18H2,1-7H3
InChI KeyVQVGNVXQGAGQRV-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTerpene glycosides
Direct ParentTriterpene saponins
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point108 - 110 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.00012 g/LALOGPS
logP4.56ALOGPS
logP5.32ChemAxon
logS-6.6ALOGPS
pKa (Strongest Acidic)11.68ChemAxon
pKa (Strongest Basic)-3.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area58.92 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity134.32 m³·mol⁻¹ChemAxon
Polarizability56.42 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+209.69131661259
DarkChem[M-H]-204.84131661259
DeepCCS[M-2H]-241.84230932474
DeepCCS[M+Na]+217.06930932474
AllCCS[M+H]+217.332859911
AllCCS[M+H-H2O]+215.732859911
AllCCS[M+NH4]+218.732859911
AllCCS[M+Na]+219.232859911
AllCCS[M-H]-214.032859911
AllCCS[M+Na-2H]-216.532859911
AllCCS[M+HCOO]-219.332859911

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol,1TMS,isomer #1CC(C)(O[Si](C)(C)C)C1CCC(C)(C2CCC3(C)C2CCC2C45CCC(O)(OC4)C(C)(C)C5CCC23C)O13650.0Semi standard non polar33892256
(3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol,1TMS,isomer #2CC(C)(O)C1CCC(C)(C2CCC3(C)C2CCC2C45CCC(O[Si](C)(C)C)(OC4)C(C)(C)C5CCC23C)O13619.7Semi standard non polar33892256
(3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol,2TMS,isomer #1CC(C)(O[Si](C)(C)C)C1CCC(C)(C2CCC3(C)C2CCC2C45CCC(O[Si](C)(C)C)(OC4)C(C)(C)C5CCC23C)O13645.3Semi standard non polar33892256
(3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol,1TBDMS,isomer #1CC(C)(O[Si](C)(C)C(C)(C)C)C1CCC(C)(C2CCC3(C)C2CCC2C45CCC(O)(OC4)C(C)(C)C5CCC23C)O13876.3Semi standard non polar33892256
(3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol,1TBDMS,isomer #2CC(C)(O)C1CCC(C)(C2CCC3(C)C2CCC2C45CCC(O[Si](C)(C)C(C)(C)C)(OC4)C(C)(C)C5CCC23C)O13836.6Semi standard non polar33892256
(3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol,2TBDMS,isomer #1CC(C)(O[Si](C)(C)C(C)(C)C)C1CCC(C)(C2CCC3(C)C2CCC2C45CCC(O[Si](C)(C)C(C)(C)C)(OC4)C(C)(C)C5CCC23C)O14088.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol GC-MS (Non-derivatized) - 70eV, Positivesplash10-0a4i-9045700000-b6c2085235d634e1c6d02017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol GC-MS (2 TMS) - 70eV, Positivesplash10-0ufr-9224326000-4f6944e8a9d927ceeb342017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol 10V, Positive-QTOFsplash10-004i-0002900000-649e7b556edd400cae522015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol 20V, Positive-QTOFsplash10-055r-3039700000-67493afa1eac7dc1e9052015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol 40V, Positive-QTOFsplash10-0296-0079200000-9565904ad5fc6f4fc3c62015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol 10V, Negative-QTOFsplash10-00di-0000900000-eb6696551de99d9b68d52015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol 20V, Negative-QTOFsplash10-05fr-1001900000-b7e8c072fab63ff8cdfc2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol 40V, Negative-QTOFsplash10-0079-0009100000-89d8b10714c006a836a32015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol 10V, Positive-QTOFsplash10-004i-0000900000-56689f82f24a6c9f3d5d2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol 20V, Positive-QTOFsplash10-0a4i-3648900000-3001070992f77ff357aa2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol 40V, Positive-QTOFsplash10-0079-3932000000-5af400f077db7328c8342021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol 10V, Negative-QTOFsplash10-00di-0000900000-632d153adcf55f87c2bc2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol 20V, Negative-QTOFsplash10-0229-0000900000-71d51934eb63dc3ba0a52021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol 40V, Negative-QTOFsplash10-0a4i-3009500000-c9c131e1bdfeab7eb64c2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB013212
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound73804808
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.