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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 19:59:29 UTC

Update Date

2022-03-07 02:54:20 UTC

HMDB ID

HMDB0035051

Secondary Accession Numbers

HMDB35051

Metabolite Identification

Common Name

Gibberellin A59

Description

Gibberellin A59, also known as GA59, belongs to the class of organic compounds known as c19-gibberellin 6-carboxylic acids. These are c19-gibberellins with a carboxyl group at the 6-position. Based on a literature review a small amount of articles have been published on Gibberellin A59.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652307232018422D          

 28 32  0  0  1  0            999 V2000
   -0.2153   -0.5591    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7305    0.9375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0212    1.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7844    1.8843    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2102    0.7794    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5055    1.4823    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0885    0.0553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6403    0.6682    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2649    0.1046    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4325    0.4370    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4698   -0.0036    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0403   -1.3434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8478   -1.5145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1801    1.9571    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5107   -1.9571    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9987    0.5212    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9987   -0.3038    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9987    1.3426    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7174    0.9318    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7174   -0.7260    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1586   -0.0720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4288    0.5212    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4288   -0.3038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7159   -1.3203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5538    0.0230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9987   -1.1253    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4325   -1.7293    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0034   -1.7365    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  4  6  1  0  0  0  0
  5  9  1  0  0  0  0
  6  8  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9  2  1  6  0  0  0
  6  2  1  6  0  0  0
  8 10  2  0  0  0  0
  1  9  1  0  0  0  0
  5 11  1  1  0  0  0
  6 14  1  0  0  0  0
  1 12  1  1  0  0  0
 12 13  2  0  0  0  0
 12 15  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  6  0  0  0
 16 19  1  0  0  0  0
 17 20  1  0  0  0  0
 18 21  1  0  0  0  0
 19 22  1  0  0  0  0
 20 23  1  0  0  0  0
 20 24  1  0  0  0  0
 21 25  2  0  0  0  0
 20 21  1  6  0  0  0
 22 23  2  0  0  0  0
 17 26  1  1  0  0  0
 16  5  1  0  0  0  0
 17  1  1  0  0  0  0
 24 28  2  0  0  0  0
 24 27  1  0  0  0  0
M  END

HMDB0035051
     RDKit          3D
Gibberellin A59
 46 50  0  0  0  0  0  0  0  0999 V2000
    4.1045    0.7845   -1.4559 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9807    0.5953   -0.7989 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6158    0.7130   -1.3661 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6985    0.4000   -0.1974 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5184    0.8826    0.9732 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8571    0.2325    0.6171 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8077    0.8116    1.4328 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7627   -1.2354    0.8681 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4683   -1.8695    0.5857 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4727   -1.0718   -0.1861 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9291   -1.2128    0.2630 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5931   -2.5041   -0.0949 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0913   -2.3308   -0.0529 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6676   -1.1696    0.1166 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8719    0.0605    0.3637 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6217    1.2912    0.1676 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8102    1.2483   -0.1952 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0435    2.5317    0.3759 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2956   -0.0648    1.7286 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7737    0.4867    2.7384 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1848   -0.8862    1.5837 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6319   -0.0765   -0.4956 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6442    1.0376   -0.2784 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7750    2.1159   -1.2758 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5470    1.9581   -2.2673 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0554    3.2922   -1.1249 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0622    1.0504   -2.5037 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0920    0.6806   -0.9717 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5423   -0.1199   -2.1269 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4166    1.6725   -1.8352 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5946    1.9663    0.9063 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2075    0.4771    1.9314 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5410    0.1808    1.6482 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0244   -1.3938    1.9561 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6275   -1.7148    0.3208 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9553   -2.1878    1.5418 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6548   -2.8401    0.0514 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4997   -1.4162   -1.2640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3521   -3.2416    0.7010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3157   -2.9006   -1.0772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7320   -3.2100   -0.1685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7418   -1.0806    0.0801 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9048    2.8805    1.3149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8203   -0.3435   -1.5306 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8696    1.4388    0.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2320    4.0819   -1.7547 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  4  3  1  6
  4  5  1  0
  5  6  1  0
  6  7  1  1
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  1
 16 17  2  0
 16 18  1  0
 15 19  1  0
 19 20  2  0
 19 21  1  0
 15 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
 24 26  1  0
  6  2  1  0
 11 21  1  1
 10  4  1  0
 22 11  1  0
 23  4  1  0
  1 27  1  0
  1 28  1  0
  3 29  1  0
  3 30  1  0
  5 31  1  0
  5 32  1  0
  7 33  1  0
  8 34  1  0
  8 35  1  0
  9 36  1  0
  9 37  1  0
 10 38  1  6
 12 39  1  0
 12 40  1  0
 13 41  1  0
 14 42  1  0
 18 43  1  0
 22 44  1  6
 23 45  1  1
 26 46  1  0
M  END


  Mrv1652307232018422D          

 28 32  0  0  1  0            999 V2000
   -0.2153   -0.5591    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7305    0.9375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0212    1.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7844    1.8843    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2102    0.7794    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5055    1.4823    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0885    0.0553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6403    0.6682    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2649    0.1046    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4325    0.4370    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4698   -0.0036    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0403   -1.3434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8478   -1.5145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1801    1.9571    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5107   -1.9571    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9987    0.5212    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9987   -0.3038    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9987    1.3426    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7174    0.9318    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7174   -0.7260    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1586   -0.0720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4288    0.5212    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4288   -0.3038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7159   -1.3203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5538    0.0230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9987   -1.1253    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4325   -1.7293    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0034   -1.7365    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  4  6  1  0  0  0  0
  5  9  1  0  0  0  0
  6  8  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9  2  1  6  0  0  0
  6  2  1  6  0  0  0
  8 10  2  0  0  0  0
  1  9  1  0  0  0  0
  5 11  1  1  0  0  0
  6 14  1  0  0  0  0
  1 12  1  1  0  0  0
 12 13  2  0  0  0  0
 12 15  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  6  0  0  0
 16 19  1  0  0  0  0
 17 20  1  0  0  0  0
 18 21  1  0  0  0  0
 19 22  1  0  0  0  0
 20 23  1  0  0  0  0
 20 24  1  0  0  0  0
 21 25  2  0  0  0  0
 20 21  1  6  0  0  0
 22 23  2  0  0  0  0
 17 26  1  1  0  0  0
 16  5  1  0  0  0  0
 17  1  1  0  0  0  0
 24 28  2  0  0  0  0
 24 27  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0035051

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C(O)=O)[C@@]1([H])[C@@]22CC=C[C@@]1(C(O)=O)C(=O)O2

> <INCHI_IDENTIFIER>
InChI=1S/C19H20O7/c1-9-7-16-8-17(9,25)6-3-10(16)19-5-2-4-18(14(22)23,15(24)26-19)12(19)11(16)13(20)21/h2,4,10-12,25H,1,3,5-8H2,(H,20,21)(H,22,23)/t10-,11-,12-,16+,17+,18-,19-/m1/s1

> <INCHI_KEY>
OCSSJFLGODGXOU-ZGHMGGRHSA-N

> <FORMULA>
C19H20O7

> <MOLECULAR_WEIGHT>
360.362

> <EXACT_MASS>
360.120902984

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
34.88242297493626

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2R,5S,8S,9S,10R,11R)-5-hydroxy-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,8}]heptadec-12-ene-9,11-dicarboxylic acid

> <ALOGPS_LOGP>
0.79

> <JCHEM_LOGP>
0.46160202966666664

> <ALOGPS_LOGS>
-2.21

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
4.265952859062375

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.564479960567479

> <JCHEM_PKA_STRONGEST_BASIC>
-0.9049400592964217

> <JCHEM_POLAR_SURFACE_AREA>
121.13000000000002

> <JCHEM_REFRACTIVITY>
86.92519999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.20e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,5S,8S,9S,10R,11R)-5-hydroxy-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,8}]heptadec-12-ene-9,11-dicarboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0035051
     RDKit          3D
Gibberellin A59
 46 50  0  0  0  0  0  0  0  0999 V2000
    4.1045    0.7845   -1.4559 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9807    0.5953   -0.7989 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6158    0.7130   -1.3661 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6985    0.4000   -0.1974 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5184    0.8826    0.9732 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8571    0.2325    0.6171 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8077    0.8116    1.4328 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7627   -1.2354    0.8681 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4683   -1.8695    0.5857 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4727   -1.0718   -0.1861 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9291   -1.2128    0.2630 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5931   -2.5041   -0.0949 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0913   -2.3308   -0.0529 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6676   -1.1696    0.1166 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8719    0.0605    0.3637 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6217    1.2912    0.1676 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8102    1.2483   -0.1952 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0435    2.5317    0.3759 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2956   -0.0648    1.7286 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7737    0.4867    2.7384 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1848   -0.8862    1.5837 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6319   -0.0765   -0.4956 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6442    1.0376   -0.2784 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7750    2.1159   -1.2758 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5470    1.9581   -2.2673 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0554    3.2922   -1.1249 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0622    1.0504   -2.5037 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0920    0.6806   -0.9717 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5423   -0.1199   -2.1269 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4166    1.6725   -1.8352 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5946    1.9663    0.9063 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2075    0.4771    1.9314 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5410    0.1808    1.6482 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0244   -1.3938    1.9561 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6275   -1.7148    0.3208 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9553   -2.1878    1.5418 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6548   -2.8401    0.0514 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4997   -1.4162   -1.2640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3521   -3.2416    0.7010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3157   -2.9006   -1.0772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7320   -3.2100   -0.1685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7418   -1.0806    0.0801 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9048    2.8805    1.3149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8203   -0.3435   -1.5306 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8696    1.4388    0.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2320    4.0819   -1.7547 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  4  3  1  6
  4  5  1  0
  5  6  1  0
  6  7  1  1
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  1
 16 17  2  0
 16 18  1  0
 15 19  1  0
 19 20  2  0
 19 21  1  0
 15 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
 24 26  1  0
  6  2  1  0
 11 21  1  1
 10  4  1  0
 22 11  1  0
 23  4  1  0
  1 27  1  0
  1 28  1  0
  3 29  1  0
  3 30  1  0
  5 31  1  0
  5 32  1  0
  7 33  1  0
  8 34  1  0
  8 35  1  0
  9 36  1  0
  9 37  1  0
 10 38  1  6
 12 39  1  0
 12 40  1  0
 13 41  1  0
 14 42  1  0
 18 43  1  0
 22 44  1  6
 23 45  1  1
 26 46  1  0
M  END

HEADER    PROTEIN                                 23-JUL-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-JUL-20         0                                  
HETATM    1  C   UNK     0      -0.402  -1.044   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.364   1.750   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.040   2.933   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.464   3.517   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.392   1.455   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.810   2.767   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.032   0.103   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.062   1.247   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.494   0.195   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.541   0.816   0.000  0.00  0.00           C+0
HETATM   11  H   UNK     0      -0.877  -0.007   0.000  0.00  0.00           H+0
HETATM   12  C   UNK     0       0.075  -2.508   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       1.582  -2.827   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       4.070   3.653   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      -0.953  -3.653   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      -1.864   0.973   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.864  -0.567   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -1.864   2.506   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      -3.206   1.739   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -3.206  -1.355   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -4.029  -0.134   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -4.534   0.973   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -4.534  -0.567   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -3.203  -2.465   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      -2.901   0.043   0.000  0.00  0.00           O+0
HETATM   26  H   UNK     0      -1.864  -2.101   0.000  0.00  0.00           H+0
HETATM   27  O   UNK     0      -4.541  -3.228   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0      -1.873  -3.241   0.000  0.00  0.00           O+0
CONECT    1    9   12   17                                                  
CONECT    2    9    6                                                       
CONECT    3    4    5                                                       
CONECT    4    3    6                                                       
CONECT    5    3    9   11   16                                             
CONECT    6    4    8    2   14                                             
CONECT    7    8    9                                                       
CONECT    8    6    7   10                                                  
CONECT    9    5    7    2    1                                             
CONECT   10    8                                                            
CONECT   11    5                                                            
CONECT   12    1   13   15                                                  
CONECT   13   12                                                            
CONECT   14    6                                                            
CONECT   15   12                                                            
CONECT   16   17   18   19    5                                             
CONECT   17   16   20   26    1                                             
CONECT   18   16   21                                                       
CONECT   19   16   22                                                       
CONECT   20   17   23   24   21                                             
CONECT   21   18   25   20                                                  
CONECT   22   19   23                                                       
CONECT   23   20   22                                                       
CONECT   24   20   28   27                                                  
CONECT   25   21                                                            
CONECT   26   17                                                            
CONECT   27   24                                                            
CONECT   28   24                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   64    0
END

COMPND    HMDB0035051
HETATM    1  C1  UNL     1       4.104   0.785  -1.456  1.00  0.00           C  
HETATM    2  C2  UNL     1       2.981   0.595  -0.799  1.00  0.00           C  
HETATM    3  C3  UNL     1       1.616   0.713  -1.366  1.00  0.00           C  
HETATM    4  C4  UNL     1       0.698   0.400  -0.197  1.00  0.00           C  
HETATM    5  C5  UNL     1       1.518   0.883   0.973  1.00  0.00           C  
HETATM    6  C6  UNL     1       2.857   0.233   0.617  1.00  0.00           C  
HETATM    7  O1  UNL     1       3.808   0.812   1.433  1.00  0.00           O  
HETATM    8  C7  UNL     1       2.763  -1.235   0.868  1.00  0.00           C  
HETATM    9  C8  UNL     1       1.468  -1.870   0.586  1.00  0.00           C  
HETATM   10  C9  UNL     1       0.473  -1.072  -0.186  1.00  0.00           C  
HETATM   11  C10 UNL     1      -0.929  -1.213   0.263  1.00  0.00           C  
HETATM   12  C11 UNL     1      -1.593  -2.504  -0.095  1.00  0.00           C  
HETATM   13  C12 UNL     1      -3.091  -2.331  -0.053  1.00  0.00           C  
HETATM   14  C13 UNL     1      -3.668  -1.170   0.117  1.00  0.00           C  
HETATM   15  C14 UNL     1      -2.872   0.060   0.364  1.00  0.00           C  
HETATM   16  C15 UNL     1      -3.622   1.291   0.168  1.00  0.00           C  
HETATM   17  O2  UNL     1      -4.810   1.248  -0.195  1.00  0.00           O  
HETATM   18  O3  UNL     1      -3.043   2.532   0.376  1.00  0.00           O  
HETATM   19  C16 UNL     1      -2.296  -0.065   1.729  1.00  0.00           C  
HETATM   20  O4  UNL     1      -2.774   0.487   2.738  1.00  0.00           O  
HETATM   21  O5  UNL     1      -1.185  -0.886   1.584  1.00  0.00           O  
HETATM   22  C17 UNL     1      -1.632  -0.077  -0.496  1.00  0.00           C  
HETATM   23  C18 UNL     1      -0.644   1.038  -0.278  1.00  0.00           C  
HETATM   24  C19 UNL     1      -0.775   2.116  -1.276  1.00  0.00           C  
HETATM   25  O6  UNL     1      -1.547   1.958  -2.267  1.00  0.00           O  
HETATM   26  O7  UNL     1      -0.055   3.292  -1.125  1.00  0.00           O  
HETATM   27  H1  UNL     1       4.062   1.050  -2.504  1.00  0.00           H  
HETATM   28  H2  UNL     1       5.092   0.681  -0.972  1.00  0.00           H  
HETATM   29  H3  UNL     1       1.542  -0.120  -2.127  1.00  0.00           H  
HETATM   30  H4  UNL     1       1.417   1.672  -1.835  1.00  0.00           H  
HETATM   31  H5  UNL     1       1.595   1.966   0.906  1.00  0.00           H  
HETATM   32  H6  UNL     1       1.208   0.477   1.931  1.00  0.00           H  
HETATM   33  H7  UNL     1       4.541   0.181   1.648  1.00  0.00           H  
HETATM   34  H8  UNL     1       3.024  -1.394   1.956  1.00  0.00           H  
HETATM   35  H9  UNL     1       3.627  -1.715   0.321  1.00  0.00           H  
HETATM   36  H10 UNL     1       0.955  -2.188   1.542  1.00  0.00           H  
HETATM   37  H11 UNL     1       1.655  -2.840   0.051  1.00  0.00           H  
HETATM   38  H12 UNL     1       0.500  -1.416  -1.264  1.00  0.00           H  
HETATM   39  H13 UNL     1      -1.352  -3.242   0.701  1.00  0.00           H  
HETATM   40  H14 UNL     1      -1.316  -2.901  -1.077  1.00  0.00           H  
HETATM   41  H15 UNL     1      -3.732  -3.210  -0.168  1.00  0.00           H  
HETATM   42  H16 UNL     1      -4.742  -1.081   0.080  1.00  0.00           H  
HETATM   43  H17 UNL     1      -2.905   2.881   1.315  1.00  0.00           H  
HETATM   44  H18 UNL     1      -1.820  -0.344  -1.531  1.00  0.00           H  
HETATM   45  H19 UNL     1      -0.870   1.439   0.755  1.00  0.00           H  
HETATM   46  H20 UNL     1      -0.232   4.082  -1.755  1.00  0.00           H  
CONECT    1    2    2   27   28
CONECT    2    3    6
CONECT    3    4   29   30
CONECT    4    5   10   23
CONECT    5    6   31   32
CONECT    6    7    8
CONECT    7   33
CONECT    8    9   34   35
CONECT    9   10   36   37
CONECT   10   11   38
CONECT   11   12   21   22
CONECT   12   13   39   40
CONECT   13   14   14   41
CONECT   14   15   42
CONECT   15   16   19   22
CONECT   16   17   17   18
CONECT   18   43
CONECT   19   20   20   21
CONECT   22   23   44
CONECT   23   24   45
CONECT   24   25   25   26
CONECT   26   46
END

HMDB0035051
     RDKit          3D
Gibberellin A59
 46 50  0  0  0  0  0  0  0  0999 V2000
    4.1045    0.7845   -1.4559 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9807    0.5953   -0.7989 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6158    0.7130   -1.3661 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6985    0.4000   -0.1974 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5184    0.8826    0.9732 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8571    0.2325    0.6171 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8077    0.8116    1.4328 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7627   -1.2354    0.8681 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4683   -1.8695    0.5857 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4727   -1.0718   -0.1861 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9291   -1.2128    0.2630 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5931   -2.5041   -0.0949 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0913   -2.3308   -0.0529 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6676   -1.1696    0.1166 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8719    0.0605    0.3637 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6217    1.2912    0.1676 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8102    1.2483   -0.1952 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0435    2.5317    0.3759 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2956   -0.0648    1.7286 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7737    0.4867    2.7384 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1848   -0.8862    1.5837 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6319   -0.0765   -0.4956 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6442    1.0376   -0.2784 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7750    2.1159   -1.2758 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5470    1.9581   -2.2673 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0554    3.2922   -1.1249 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0622    1.0504   -2.5037 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0920    0.6806   -0.9717 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5423   -0.1199   -2.1269 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4166    1.6725   -1.8352 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5946    1.9663    0.9063 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2075    0.4771    1.9314 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5410    0.1808    1.6482 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0244   -1.3938    1.9561 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6275   -1.7148    0.3208 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9553   -2.1878    1.5418 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6548   -2.8401    0.0514 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4997   -1.4162   -1.2640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3521   -3.2416    0.7010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3157   -2.9006   -1.0772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7320   -3.2100   -0.1685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7418   -1.0806    0.0801 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9048    2.8805    1.3149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8203   -0.3435   -1.5306 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8696    1.4388    0.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2320    4.0819   -1.7547 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  4  3  1  6
  4  5  1  0
  5  6  1  0
  6  7  1  1
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  1
 16 17  2  0
 16 18  1  0
 15 19  1  0
 19 20  2  0
 19 21  1  0
 15 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
 24 26  1  0
  6  2  1  0
 11 21  1  1
 10  4  1  0
 22 11  1  0
 23  4  1  0
  1 27  1  0
  1 28  1  0
  3 29  1  0
  3 30  1  0
  5 31  1  0
  5 32  1  0
  7 33  1  0
  8 34  1  0
  8 35  1  0
  9 36  1  0
  9 37  1  0
 10 38  1  6
 12 39  1  0
 12 40  1  0
 13 41  1  0
 14 42  1  0
 18 43  1  0
 22 44  1  6
 23 45  1  1
 26 46  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
GA59	HMDB
Gibberellin A59	HMDB

Chemical Formula

C₁₉H₂₀O₇

Average Molecular Weight

360.362

Monoisotopic Molecular Weight

360.120902984

IUPAC Name

(1R,2R,5S,8S,9S,10R,11R)-5-hydroxy-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,8}]heptadec-12-ene-9,11-dicarboxylic acid

Traditional Name

(1R,2R,5S,8S,9S,10R,11R)-5-hydroxy-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,8}]heptadec-12-ene-9,11-dicarboxylic acid

CAS Registry Number

78333-20-7

SMILES

[H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C(O)=O)[C@@]1([H])[C@@]22CC=C[C@@]1(C(O)=O)C(=O)O2

InChI Identifier

InChI=1S/C19H20O7/c1-9-7-16-8-17(9,25)6-3-10(16)19-5-2-4-18(14(22)23,15(24)26-19)12(19)11(16)13(20)21/h2,4,10-12,25H,1,3,5-8H2,(H,20,21)(H,22,23)/t10-,11-,12-,16+,17+,18-,19-/m1/s1

InChI Key

OCSSJFLGODGXOU-ZGHMGGRHSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as c19-gibberellin 6-carboxylic acids. These are c19-gibberellins with a carboxyl group at the 6-position.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

C19-gibberellin 6-carboxylic acids

Alternative Parents

Substituents

20-norgibberellane-6-carboxylic acid
Diterpene lactone
Tricarboxylic acid or derivatives
Gamma butyrolactone
Cyclic alcohol
Tetrahydrofuran
Tertiary alcohol
Carboxylic acid ester
Lactone
Carboxylic acid derivative
Carboxylic acid
Oxacycle
Organoheterocyclic compound
Organic oxide
Organic oxygen compound
Hydrocarbon derivative
Carbonyl group
Alcohol
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cell membrane (HMDB: HMDB0035051)

Cellular substructure

Route of exposure

Enteral

Ingestion (HMDB: HMDB0035051)

Source

Endogenous

Endogenous (HMDB: HMDB0035051)

Plant

Fabaceae (HMDB: HMDB0035051)

Animal

Animal (HMDB: HMDB0035051)

Exogenous

Food

Food (HMDB: HMDB0035051)

Pulse

Pulses (FooDB: FOOD00867)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid peroxidation (HMDB: HMDB0035051)

Biochemical process

Fatty acid metabolism (HMDB: HMDB0035051)

Cellular process

Cell signaling (HMDB: HMDB0035051)

Biochemical pathway

Lipid metabolism pathway (HMDB: HMDB0035051)

Role

Biological role

Membrane stabilizer (HMDB: HMDB0035051)

Nutrient

Nutrient (HMDB: HMDB0035051)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0035051)

Emulsifier (HMDB: HMDB0035051)

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	248 °C	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	2.2 g/L	ALOGPS
logP	0.79	ALOGPS
logP	0.46	ChemAxon
logS	-2.2	ALOGPS
pKa (Strongest Acidic)	3.56	ChemAxon
pKa (Strongest Basic)	-0.9	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	121.13 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	86.93 m³·mol⁻¹	ChemAxon
Polarizability	34.88 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M-2H]-	210.493	30932474
DeepCCS	[M+Na]+	185.664	30932474
AllCCS	[M+H]+	180.4	32859911
AllCCS	[M+H-H2O]+	177.7	32859911
AllCCS	[M+NH4]+	182.9	32859911
AllCCS	[M+Na]+	183.6	32859911
AllCCS	[M-H]-	184.4	32859911
AllCCS	[M+Na-2H]-	183.9	32859911
AllCCS	[M+HCOO]-	183.5	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Gibberellin A59	[H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C(O)=O)[C@@]1([H])[C@@]22CC=C[C@@]1(C(O)=O)C(=O)O2	4275.3	Standard polar	33892256
Gibberellin A59	[H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C(O)=O)[C@@]1([H])[C@@]22CC=C[C@@]1(C(O)=O)C(=O)O2	2672.8	Standard non polar	33892256
Gibberellin A59	[H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C(O)=O)[C@@]1([H])[C@@]22CC=C[C@@]1(C(O)=O)C(=O)O2	2981.6	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Gibberellin A59,1TMS,isomer #1	C=C1C[C@]23C[C@@]1(O[Si](C)(C)C)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O)(C(=O)O1)[C@H]2[C@@H]3C(=O)O	2905.0	Semi standard non polar	33892256
Gibberellin A59,1TMS,isomer #2	C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O)(C(=O)O1)[C@H]2[C@@H]3C(=O)O[Si](C)(C)C	2835.7	Semi standard non polar	33892256
Gibberellin A59,1TMS,isomer #3	C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O[Si](C)(C)C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O	2853.5	Semi standard non polar	33892256
Gibberellin A59,2TMS,isomer #1	C=C1C[C@]23C[C@@]1(O[Si](C)(C)C)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O[Si](C)(C)C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O	2873.0	Semi standard non polar	33892256
Gibberellin A59,2TMS,isomer #2	C=C1C[C@]23C[C@@]1(O[Si](C)(C)C)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O)(C(=O)O1)[C@H]2[C@@H]3C(=O)O[Si](C)(C)C	2865.9	Semi standard non polar	33892256
Gibberellin A59,2TMS,isomer #3	C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O[Si](C)(C)C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O[Si](C)(C)C	2846.4	Semi standard non polar	33892256
Gibberellin A59,3TMS,isomer #1	C=C1C[C@]23C[C@@]1(O[Si](C)(C)C)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O[Si](C)(C)C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O[Si](C)(C)C	2863.2	Semi standard non polar	33892256
Gibberellin A59,1TBDMS,isomer #1	C=C1C[C@]23C[C@@]1(O[Si](C)(C)C(C)(C)C)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O)(C(=O)O1)[C@H]2[C@@H]3C(=O)O	3122.1	Semi standard non polar	33892256
Gibberellin A59,1TBDMS,isomer #2	C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O)(C(=O)O1)[C@H]2[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C	3072.1	Semi standard non polar	33892256
Gibberellin A59,1TBDMS,isomer #3	C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O[Si](C)(C)C(C)(C)C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O	3081.1	Semi standard non polar	33892256
Gibberellin A59,2TBDMS,isomer #1	C=C1C[C@]23C[C@@]1(O[Si](C)(C)C(C)(C)C)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O[Si](C)(C)C(C)(C)C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O	3323.6	Semi standard non polar	33892256
Gibberellin A59,2TBDMS,isomer #2	C=C1C[C@]23C[C@@]1(O[Si](C)(C)C(C)(C)C)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O)(C(=O)O1)[C@H]2[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C	3309.7	Semi standard non polar	33892256
Gibberellin A59,2TBDMS,isomer #3	C=C1C[C@]23C[C@@]1(O)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O[Si](C)(C)C(C)(C)C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C	3286.2	Semi standard non polar	33892256
Gibberellin A59,3TBDMS,isomer #1	C=C1C[C@]23C[C@@]1(O[Si](C)(C)C(C)(C)C)CC[C@H]2[C@@]12CC=C[C@@](C(=O)O[Si](C)(C)C(C)(C)C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C	3515.4	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Gibberellin A59 GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Gibberellin A59 10V, Negative-QTOF	splash10-052f-0009000000-7fc4e4d78baf3248501d	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Gibberellin A59 20V, Negative-QTOF	splash10-014i-0049000000-fa5b656bca288e188c79	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Gibberellin A59 40V, Negative-QTOF	splash10-0aov-1269000000-ffc94d24c711dfefa801	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Gibberellin A59 10V, Positive-QTOF	splash10-03di-0009000000-130ce51b4a0594560b93	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Gibberellin A59 20V, Positive-QTOF	splash10-03xr-0019000000-c2f739a85a03cd8f94d2	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Gibberellin A59 40V, Positive-QTOF	splash10-03di-0039000000-9a63608809f297fd5f4f	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Cytoplasm
Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB013671

KNApSAcK ID

C00000059

Chemspider ID

103883611

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101603125

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for Gibberellin A59 (HMDB0035051)

MOL for HMDB0035051 (Gibberellin A59)

3D MOL for HMDB0035051 (Gibberellin A59)

3D SDF for HMDB0035051 (Gibberellin A59)

3D-SDF for HMDB0035051 (Gibberellin A59)

PDB for HMDB0035051 (Gibberellin A59)

3D PDB for HMDB0035051 (Gibberellin A59)

SMILES for HMDB0035051 (Gibberellin A59)

INCHI for HMDB0035051 (Gibberellin A59)

Structure for HMDB0035051 (Gibberellin A59)

3D Structure for HMDB0035051 (Gibberellin A59)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra