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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 20:27:38 UTC
Update Date2022-03-07 02:54:31 UTC
HMDB IDHMDB0035467
Secondary Accession Numbers
  • HMDB35467
Metabolite Identification
Common NameGlicophenone
DescriptionGlicophenone belongs to the class of organic compounds known as stilbenes. These are organic compounds containing a 1,2-diphenylethylene moiety. Stilbenes (C6-C2-C6 ) are derived from the common phenylpropene (C6-C3) skeleton building block. The introduction of one or more hydroxyl groups to a phenyl ring lead to stilbenoids. Glicophenone has been detected, but not quantified in, herbs and spices. This could make glicophenone a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Glicophenone.
Structure
Data?1563862724
Synonyms
ValueSource
GlicophenoneMeSH
Chemical FormulaC20H22O6
Average Molecular Weight358.3851
Monoisotopic Molecular Weight358.141638436
IUPAC Name2-[4,6-dihydroxy-2-methoxy-3-(3-methylbut-2-en-1-yl)phenyl]-1-(2,4-dihydroxyphenyl)ethan-1-one
Traditional Name2-[4,6-dihydroxy-2-methoxy-3-(3-methylbut-2-en-1-yl)phenyl]-1-(2,4-dihydroxyphenyl)ethanone
CAS Registry NumberNot Available
SMILES
COC1=C(CC=C(C)C)C(O)=CC(O)=C1CC(=O)C1=C(O)C=C(O)C=C1
InChI Identifier
InChI=1S/C20H22O6/c1-11(2)4-6-14-18(24)10-19(25)15(20(14)26-3)9-17(23)13-7-5-12(21)8-16(13)22/h4-5,7-8,10,21-22,24-25H,6,9H2,1-3H3
InChI KeyJYRFVDHHGPHQBG-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as stilbenes. These are organic compounds containing a 1,2-diphenylethylene moiety. Stilbenes (C6-C2-C6 ) are derived from the common phenylpropene (C6-C3) skeleton building block. The introduction of one or more hydroxyl groups to a phenyl ring lead to stilbenoids.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassStilbenes
Sub ClassNot Available
Direct ParentStilbenes
Alternative Parents
Substituents
  • Stilbene
  • Alkyl-phenylketone
  • Methoxyphenol
  • Phenylketone
  • Phenoxy compound
  • Anisole
  • Benzoyl
  • Methoxybenzene
  • Aryl alkyl ketone
  • Aryl ketone
  • Phenol ether
  • Resorcinol
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Phenol
  • Monocyclic benzene moiety
  • Benzenoid
  • Vinylogous acid
  • Ketone
  • Ether
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Organooxygen compound
  • Organic oxide
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point145 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.016 g/LALOGPS
logP3.11ALOGPS
logP4.37ChemAxon
logS-4.4ALOGPS
pKa (Strongest Acidic)7.84ChemAxon
pKa (Strongest Basic)-3.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area107.22 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity99.81 m³·mol⁻¹ChemAxon
Polarizability36.86 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+185.28231661259
DarkChem[M-H]-184.18931661259
DeepCCS[M+H]+190.55930932474
DeepCCS[M-H]-188.20130932474
DeepCCS[M-2H]-222.44430932474
DeepCCS[M+Na]+198.24930932474
AllCCS[M+H]+186.932859911
AllCCS[M+H-H2O]+183.732859911
AllCCS[M+NH4]+189.832859911
AllCCS[M+Na]+190.632859911
AllCCS[M-H]-186.532859911
AllCCS[M+Na-2H]-186.532859911
AllCCS[M+HCOO]-186.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
GlicophenoneCOC1=C(CC=C(C)C)C(O)=CC(O)=C1CC(=O)C1=C(O)C=C(O)C=C14661.7Standard polar33892256
GlicophenoneCOC1=C(CC=C(C)C)C(O)=CC(O)=C1CC(=O)C1=C(O)C=C(O)C=C13048.4Standard non polar33892256
GlicophenoneCOC1=C(CC=C(C)C)C(O)=CC(O)=C1CC(=O)C1=C(O)C=C(O)C=C13354.5Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Glicophenone,1TMS,isomer #1COC1=C(CC(=O)C2=CC=C(O)C=C2O)C(O)=CC(O[Si](C)(C)C)=C1CC=C(C)C3100.8Semi standard non polar33892256
Glicophenone,1TMS,isomer #2COC1=C(CC=C(C)C)C(O)=CC(O[Si](C)(C)C)=C1CC(=O)C1=CC=C(O)C=C1O3124.3Semi standard non polar33892256
Glicophenone,1TMS,isomer #3COC1=C(CC=C(C)C)C(O)=CC(O)=C1CC(=O)C1=CC=C(O)C=C1O[Si](C)(C)C3174.6Semi standard non polar33892256
Glicophenone,1TMS,isomer #4COC1=C(CC=C(C)C)C(O)=CC(O)=C1CC(=O)C1=CC=C(O[Si](C)(C)C)C=C1O3144.5Semi standard non polar33892256
Glicophenone,2TMS,isomer #1COC1=C(CC(=O)C2=CC=C(O[Si](C)(C)C)C=C2O)C(O)=CC(O[Si](C)(C)C)=C1CC=C(C)C2994.2Semi standard non polar33892256
Glicophenone,2TMS,isomer #2COC1=C(CC(=O)C2=CC=C(O)C=C2O[Si](C)(C)C)C(O)=CC(O[Si](C)(C)C)=C1CC=C(C)C3053.6Semi standard non polar33892256
Glicophenone,2TMS,isomer #3COC1=C(CC=C(C)C)C(O[Si](C)(C)C)=CC(O[Si](C)(C)C)=C1CC(=O)C1=CC=C(O)C=C1O2978.2Semi standard non polar33892256
Glicophenone,2TMS,isomer #4COC1=C(CC=C(C)C)C(O)=CC(O[Si](C)(C)C)=C1CC(=O)C1=CC=C(O[Si](C)(C)C)C=C1O3010.9Semi standard non polar33892256
Glicophenone,2TMS,isomer #5COC1=C(CC=C(C)C)C(O)=CC(O[Si](C)(C)C)=C1CC(=O)C1=CC=C(O)C=C1O[Si](C)(C)C3069.3Semi standard non polar33892256
Glicophenone,2TMS,isomer #6COC1=C(CC=C(C)C)C(O)=CC(O)=C1CC(=O)C1=CC=C(O[Si](C)(C)C)C=C1O[Si](C)(C)C3064.2Semi standard non polar33892256
Glicophenone,3TMS,isomer #1COC1=C(CC(=O)C2=CC=C(O[Si](C)(C)C)C=C2O[Si](C)(C)C)C(O)=CC(O[Si](C)(C)C)=C1CC=C(C)C2980.7Semi standard non polar33892256
Glicophenone,3TMS,isomer #2COC1=C(CC=C(C)C)C(O[Si](C)(C)C)=CC(O[Si](C)(C)C)=C1CC(=O)C1=CC=C(O[Si](C)(C)C)C=C1O2984.1Semi standard non polar33892256
Glicophenone,3TMS,isomer #3COC1=C(CC=C(C)C)C(O[Si](C)(C)C)=CC(O[Si](C)(C)C)=C1CC(=O)C1=CC=C(O)C=C1O[Si](C)(C)C2969.5Semi standard non polar33892256
Glicophenone,3TMS,isomer #4COC1=C(CC=C(C)C)C(O)=CC(O[Si](C)(C)C)=C1CC(=O)C1=CC=C(O[Si](C)(C)C)C=C1O[Si](C)(C)C2990.3Semi standard non polar33892256
Glicophenone,4TMS,isomer #1COC1=C(CC=C(C)C)C(O[Si](C)(C)C)=CC(O[Si](C)(C)C)=C1CC(=O)C1=CC=C(O[Si](C)(C)C)C=C1O[Si](C)(C)C3013.3Semi standard non polar33892256
Glicophenone,1TBDMS,isomer #1COC1=C(CC(=O)C2=CC=C(O)C=C2O)C(O)=CC(O[Si](C)(C)C(C)(C)C)=C1CC=C(C)C3380.9Semi standard non polar33892256
Glicophenone,1TBDMS,isomer #2COC1=C(CC=C(C)C)C(O)=CC(O[Si](C)(C)C(C)(C)C)=C1CC(=O)C1=CC=C(O)C=C1O3404.6Semi standard non polar33892256
Glicophenone,1TBDMS,isomer #3COC1=C(CC=C(C)C)C(O)=CC(O)=C1CC(=O)C1=CC=C(O)C=C1O[Si](C)(C)C(C)(C)C3450.7Semi standard non polar33892256
Glicophenone,1TBDMS,isomer #4COC1=C(CC=C(C)C)C(O)=CC(O)=C1CC(=O)C1=CC=C(O[Si](C)(C)C(C)(C)C)C=C1O3430.6Semi standard non polar33892256
Glicophenone,2TBDMS,isomer #1COC1=C(CC(=O)C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2O)C(O)=CC(O[Si](C)(C)C(C)(C)C)=C1CC=C(C)C3524.4Semi standard non polar33892256
Glicophenone,2TBDMS,isomer #2COC1=C(CC(=O)C2=CC=C(O)C=C2O[Si](C)(C)C(C)(C)C)C(O)=CC(O[Si](C)(C)C(C)(C)C)=C1CC=C(C)C3567.0Semi standard non polar33892256
Glicophenone,2TBDMS,isomer #3COC1=C(CC=C(C)C)C(O[Si](C)(C)C(C)(C)C)=CC(O[Si](C)(C)C(C)(C)C)=C1CC(=O)C1=CC=C(O)C=C1O3488.0Semi standard non polar33892256
Glicophenone,2TBDMS,isomer #4COC1=C(CC=C(C)C)C(O)=CC(O[Si](C)(C)C(C)(C)C)=C1CC(=O)C1=CC=C(O[Si](C)(C)C(C)(C)C)C=C1O3548.3Semi standard non polar33892256
Glicophenone,2TBDMS,isomer #5COC1=C(CC=C(C)C)C(O)=CC(O[Si](C)(C)C(C)(C)C)=C1CC(=O)C1=CC=C(O)C=C1O[Si](C)(C)C(C)(C)C3586.3Semi standard non polar33892256
Glicophenone,2TBDMS,isomer #6COC1=C(CC=C(C)C)C(O)=CC(O)=C1CC(=O)C1=CC=C(O[Si](C)(C)C(C)(C)C)C=C1O[Si](C)(C)C(C)(C)C3595.0Semi standard non polar33892256
Glicophenone,3TBDMS,isomer #1COC1=C(CC(=O)C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2O[Si](C)(C)C(C)(C)C)C(O)=CC(O[Si](C)(C)C(C)(C)C)=C1CC=C(C)C3668.8Semi standard non polar33892256
Glicophenone,3TBDMS,isomer #2COC1=C(CC=C(C)C)C(O[Si](C)(C)C(C)(C)C)=CC(O[Si](C)(C)C(C)(C)C)=C1CC(=O)C1=CC=C(O[Si](C)(C)C(C)(C)C)C=C1O3669.8Semi standard non polar33892256
Glicophenone,3TBDMS,isomer #3COC1=C(CC=C(C)C)C(O[Si](C)(C)C(C)(C)C)=CC(O[Si](C)(C)C(C)(C)C)=C1CC(=O)C1=CC=C(O)C=C1O[Si](C)(C)C(C)(C)C3650.5Semi standard non polar33892256
Glicophenone,3TBDMS,isomer #4COC1=C(CC=C(C)C)C(O)=CC(O[Si](C)(C)C(C)(C)C)=C1CC(=O)C1=CC=C(O[Si](C)(C)C(C)(C)C)C=C1O[Si](C)(C)C(C)(C)C3682.4Semi standard non polar33892256
Glicophenone,4TBDMS,isomer #1COC1=C(CC=C(C)C)C(O[Si](C)(C)C(C)(C)C)=CC(O[Si](C)(C)C(C)(C)C)=C1CC(=O)C1=CC=C(O[Si](C)(C)C(C)(C)C)C=C1O[Si](C)(C)C(C)(C)C3833.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Glicophenone GC-MS (Non-derivatized) - 70eV, Positivesplash10-000i-1933000000-f36adaa201e9e04834592017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Glicophenone GC-MS (4 TMS) - 70eV, Positivesplash10-001i-1092027000-48892b364302084250dd2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Glicophenone GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glicophenone 10V, Positive-QTOFsplash10-0a4i-0129000000-b8ab0e6f49a7a267ea542016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glicophenone 20V, Positive-QTOFsplash10-000i-2923000000-7874e4da0470f7e4e3e12016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glicophenone 40V, Positive-QTOFsplash10-000i-5910000000-8ddba11be5f15918eeb72016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glicophenone 10V, Negative-QTOFsplash10-0a4i-0109000000-51b10d34ba406218a5162016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glicophenone 20V, Negative-QTOFsplash10-0a4i-0349000000-719281ff7e0d2e93a4252016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glicophenone 40V, Negative-QTOFsplash10-0pb9-1921000000-edf33477d8f0dfc303762016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glicophenone 10V, Negative-QTOFsplash10-0a4i-0029000000-b36110c89788829c237e2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glicophenone 20V, Negative-QTOFsplash10-0550-1957000000-7dc166016ecb731446e22021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glicophenone 40V, Negative-QTOFsplash10-0a4i-4958000000-c3b2d5ae683e5eebf1992021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glicophenone 10V, Positive-QTOFsplash10-0pb9-0109000000-aa8a962c335e4e9ce2422021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glicophenone 20V, Positive-QTOFsplash10-0udr-0914000000-67adce3bec61320b76422021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glicophenone 40V, Positive-QTOFsplash10-0fri-0974000000-c1dd393199889533d48b2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB014152
KNApSAcK IDC00033001
Chemspider ID8196871
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10021298
PDB IDNot Available
ChEBI ID175605
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

Enzymes

General function:
Involved in transferase activity, transferring hexosyl groups
Specific function:
UDPGT is of major importance in the conjugation and subsequent elimination of potentially toxic xenobiotics and endogenous compounds. This isoform glucuronidates bilirubin IX-alpha to form both the IX-alpha-C8 and IX-alpha-C12 monoconjugates and diconjugate. Is also able to catalyze the glucuronidation of 17beta-estradiol, 17alpha-ethinylestradiol, 1-hydroxypyrene, 4-methylumbelliferone, 1-naphthol, paranitrophenol, scopoletin, and umbelliferone.
Gene Name:
UGT1A1
Uniprot ID:
P22309
Molecular weight:
59590.91
Reactions
Glicophenone → 6-(4-{2-[4,6-dihydroxy-2-methoxy-3-(3-methylbut-2-en-1-yl)phenyl]acetyl}-3-hydroxyphenoxy)-3,4,5-trihydroxyoxane-2-carboxylic aciddetails
Glicophenone → 6-(2-{2-[4,6-dihydroxy-2-methoxy-3-(3-methylbut-2-en-1-yl)phenyl]acetyl}-5-hydroxyphenoxy)-3,4,5-trihydroxyoxane-2-carboxylic aciddetails
Glicophenone → 6-{2-[2-(2,4-dihydroxyphenyl)-2-oxoethyl]-5-hydroxy-3-methoxy-4-(3-methylbut-2-en-1-yl)phenoxy}-3,4,5-trihydroxyoxane-2-carboxylic aciddetails
Glicophenone → 6-{4-[2-(2,4-dihydroxyphenyl)-2-oxoethyl]-5-hydroxy-3-methoxy-2-(3-methylbut-2-en-1-yl)phenoxy}-3,4,5-trihydroxyoxane-2-carboxylic aciddetails