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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 20:46:00 UTC

Update Date

2022-03-07 02:54:37 UTC

HMDB ID

HMDB0035747

Secondary Accession Numbers

HMDB35747

Metabolite Identification

Common Name

Patchoulenone

Description

Patchoulenone, also known as 8-oxocyperene or narucinone, belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Patchoulenone is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0035747
     RDKit          3D
Patchoulenone
 38 40  0  0  0  0  0  0  0  0999 V2000
    3.4531    0.0408    1.3331 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2675    0.0199    0.3746 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0222    0.0954    0.7435 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1010    0.2147    1.9112 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4393    0.0921    3.1132 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2609    0.4998    1.3865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9806   -0.8274    1.3086 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0413   -1.8420    0.7191 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3527   -1.3796   -0.5329 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1422   -1.6606   -1.7631 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1266    0.0478   -0.4219 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9996    0.4425   -1.5488 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3483   -0.0851   -1.0869 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9313    1.0139   -0.0227 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3358    2.3678    0.1747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1114    1.0997   -0.9001 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8377    1.0735    1.4401 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1740   -0.3519    2.3097 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1886   -0.6544    0.8779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7890    1.2509    1.9836 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9543   -0.7730    0.8050 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1364   -1.1386    2.3830 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2935   -2.1382    1.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5785   -2.7955    0.4582 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5926   -1.9989   -0.6030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1486   -2.0476   -1.4277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2202   -0.8308   -2.4719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7186   -2.5263   -2.3530 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6964   -0.1270   -2.4556 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0106    1.4938   -1.8172 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5608   -1.0934   -1.4657 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1244    0.6560   -1.4248 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5038    2.3780    0.9235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0238    2.8811   -0.7311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1280    3.0129    0.6513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7588    1.9361   -0.5122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7553    0.2248   -0.9602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7852    1.4289   -1.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 11 14  1  0
 14 15  1  0
 14 16  1  0
 13  2  1  0
 11  3  1  0
 14  6  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  6 20  1  0
  7 21  1  0
  7 22  1  0
  8 23  1  0
  8 24  1  0
  9 25  1  0
 10 26  1  0
 10 27  1  0
 10 28  1  0
 12 29  1  0
 12 30  1  0
 13 31  1  0
 13 32  1  0
 15 33  1  0
 15 34  1  0
 15 35  1  0
 16 36  1  0
 16 37  1  0
 16 38  1  0
M  END


  Mrv0541 05061308412D          

 16 18  0  0  0  0            999 V2000
    0.2842    2.3615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3666   -0.2334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1888    1.1709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2982    1.9864    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7205    0.8012    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7991    1.7489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6288    1.0324    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2944    0.6345    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7943    1.7874    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5545    0.4624    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0108    2.3710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5620    1.8628    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1557    2.5340    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7702    1.5805    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9154    1.1173    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9971    3.2076    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  6  5  1  0  0  0  0
  8  7  1  0  0  0  0
  9  1  1  0  0  0  0
  9  7  1  0  0  0  0
 10  2  1  0  0  0  0
 10  5  1  0  0  0  0
 11  6  1  0  0  0  0
 12  9  2  0  0  0  0
 13 11  1  0  0  0  0
 13 12  1  0  0  0  0
 14  3  1  0  0  0  0
 14  4  1  0  0  0  0
 14 11  1  0  0  0  0
 15  8  1  0  0  0  0
 15 10  1  0  0  0  0
 15 12  1  0  0  0  0
 15 14  1  0  0  0  0
 16 13  2  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0035747

> <DATABASE_NAME>
hmdb

> <SMILES>
CC1CCC2C(=O)C3=C(C)CCC13C2(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C15H22O/c1-9-7-8-15-10(2)5-6-11(14(15,3)4)13(16)12(9)15/h10-11H,5-8H2,1-4H3

> <INCHI_KEY>
JAWSHISYWRRQQQ-UHFFFAOYSA-N

> <FORMULA>
C15H22O

> <MOLECULAR_WEIGHT>
218.3346

> <EXACT_MASS>
218.167065326

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_AVERAGE_POLARIZABILITY>
25.696721252040057

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4,10,11,11-tetramethyltricyclo[5.3.1.0¹,⁵]undec-4-en-6-one

> <ALOGPS_LOGP>
3.84

> <JCHEM_LOGP>
3.6461841823333336

> <ALOGPS_LOGS>
-3.32

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.9597027675634875

> <JCHEM_POLAR_SURFACE_AREA>
17.07

> <JCHEM_REFRACTIVITY>
66.1469

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.05e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4,10,11,11-tetramethyltricyclo[5.3.1.0¹,⁵]undec-4-en-6-one

> <JCHEM_VEBER_RULE>
1

$$$$

HMDB0035747
     RDKit          3D
Patchoulenone
 38 40  0  0  0  0  0  0  0  0999 V2000
    3.4531    0.0408    1.3331 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2675    0.0199    0.3746 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0222    0.0954    0.7435 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1010    0.2147    1.9112 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4393    0.0921    3.1132 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2609    0.4998    1.3865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9806   -0.8274    1.3086 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0413   -1.8420    0.7191 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3527   -1.3796   -0.5329 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1422   -1.6606   -1.7631 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1266    0.0478   -0.4219 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9996    0.4425   -1.5488 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3483   -0.0851   -1.0869 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9313    1.0139   -0.0227 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3358    2.3678    0.1747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1114    1.0997   -0.9001 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8377    1.0735    1.4401 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1740   -0.3519    2.3097 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1886   -0.6544    0.8779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7890    1.2509    1.9836 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9543   -0.7730    0.8050 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1364   -1.1386    2.3830 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2935   -2.1382    1.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5785   -2.7955    0.4582 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5926   -1.9989   -0.6030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1486   -2.0476   -1.4277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2202   -0.8308   -2.4719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7186   -2.5263   -2.3530 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6964   -0.1270   -2.4556 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0106    1.4938   -1.8172 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5608   -1.0934   -1.4657 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1244    0.6560   -1.4248 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5038    2.3780    0.9235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0238    2.8811   -0.7311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1280    3.0129    0.6513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7588    1.9361   -0.5122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7553    0.2248   -0.9602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7852    1.4289   -1.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 11 14  1  0
 14 15  1  0
 14 16  1  0
 13  2  1  0
 11  3  1  0
 14  6  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  6 20  1  0
  7 21  1  0
  7 22  1  0
  8 23  1  0
  8 24  1  0
  9 25  1  0
 10 26  1  0
 10 27  1  0
 10 28  1  0
 12 29  1  0
 12 30  1  0
 13 31  1  0
 13 32  1  0
 15 33  1  0
 15 34  1  0
 15 35  1  0
 16 36  1  0
 16 37  1  0
 16 38  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       0.531   4.408   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.418  -0.436   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.953   2.186   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.290   3.708   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.945   1.496   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.092   3.265   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.174   1.927   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.416   1.184   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.483   3.336   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.768   0.863   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.620   4.426   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.916   3.477   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.024   4.730   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.171   2.950   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.575   2.086   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       3.728   5.988   0.000  0.00  0.00           O+0
CONECT    1    9                                                            
CONECT    2   10                                                            
CONECT    3   14                                                            
CONECT    4   14                                                            
CONECT    5    6   10                                                       
CONECT    6    5   11                                                       
CONECT    7    8    9                                                       
CONECT    8    7   15                                                       
CONECT    9    1    7   12                                                  
CONECT   10    2    5   15                                                  
CONECT   11    6   13   14                                                  
CONECT   12    9   13   15                                                  
CONECT   13   11   12   16                                                  
CONECT   14    3    4   11   15                                             
CONECT   15    8   10   12   14                                             
CONECT   16   13                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   36    0
END

COMPND    HMDB0035747
HETATM    1  C1  UNL     1       3.453   0.041   1.333  1.00  0.00           C  
HETATM    2  C2  UNL     1       2.268   0.020   0.375  1.00  0.00           C  
HETATM    3  C3  UNL     1       1.022   0.095   0.744  1.00  0.00           C  
HETATM    4  C4  UNL     1       0.101   0.215   1.911  1.00  0.00           C  
HETATM    5  O1  UNL     1       0.439   0.092   3.113  1.00  0.00           O  
HETATM    6  C5  UNL     1      -1.261   0.500   1.386  1.00  0.00           C  
HETATM    7  C6  UNL     1      -1.981  -0.827   1.309  1.00  0.00           C  
HETATM    8  C7  UNL     1      -1.041  -1.842   0.719  1.00  0.00           C  
HETATM    9  C8  UNL     1      -0.353  -1.380  -0.533  1.00  0.00           C  
HETATM   10  C9  UNL     1      -1.142  -1.661  -1.763  1.00  0.00           C  
HETATM   11  C10 UNL     1       0.127   0.048  -0.422  1.00  0.00           C  
HETATM   12  C11 UNL     1       1.000   0.443  -1.549  1.00  0.00           C  
HETATM   13  C12 UNL     1       2.348  -0.085  -1.087  1.00  0.00           C  
HETATM   14  C13 UNL     1      -0.931   1.014  -0.023  1.00  0.00           C  
HETATM   15  C14 UNL     1      -0.336   2.368   0.175  1.00  0.00           C  
HETATM   16  C15 UNL     1      -2.111   1.100  -0.900  1.00  0.00           C  
HETATM   17  H1  UNL     1       3.838   1.073   1.440  1.00  0.00           H  
HETATM   18  H2  UNL     1       3.174  -0.352   2.310  1.00  0.00           H  
HETATM   19  H3  UNL     1       4.189  -0.654   0.878  1.00  0.00           H  
HETATM   20  H4  UNL     1      -1.789   1.251   1.984  1.00  0.00           H  
HETATM   21  H5  UNL     1      -2.954  -0.773   0.805  1.00  0.00           H  
HETATM   22  H6  UNL     1      -2.136  -1.139   2.383  1.00  0.00           H  
HETATM   23  H7  UNL     1      -0.293  -2.138   1.501  1.00  0.00           H  
HETATM   24  H8  UNL     1      -1.578  -2.796   0.458  1.00  0.00           H  
HETATM   25  H9  UNL     1       0.593  -1.999  -0.603  1.00  0.00           H  
HETATM   26  H10 UNL     1      -2.149  -2.048  -1.428  1.00  0.00           H  
HETATM   27  H11 UNL     1      -1.220  -0.831  -2.472  1.00  0.00           H  
HETATM   28  H12 UNL     1      -0.719  -2.526  -2.353  1.00  0.00           H  
HETATM   29  H13 UNL     1       0.696  -0.127  -2.456  1.00  0.00           H  
HETATM   30  H14 UNL     1       1.011   1.494  -1.817  1.00  0.00           H  
HETATM   31  H15 UNL     1       2.561  -1.093  -1.466  1.00  0.00           H  
HETATM   32  H16 UNL     1       3.124   0.656  -1.425  1.00  0.00           H  
HETATM   33  H17 UNL     1       0.504   2.378   0.923  1.00  0.00           H  
HETATM   34  H18 UNL     1      -0.024   2.881  -0.731  1.00  0.00           H  
HETATM   35  H19 UNL     1      -1.128   3.013   0.651  1.00  0.00           H  
HETATM   36  H20 UNL     1      -2.759   1.936  -0.512  1.00  0.00           H  
HETATM   37  H21 UNL     1      -2.755   0.225  -0.960  1.00  0.00           H  
HETATM   38  H22 UNL     1      -1.785   1.429  -1.899  1.00  0.00           H  
CONECT    1    2   17   18   19
CONECT    2    3    3   13
CONECT    3    4   11
CONECT    4    5    5    6
CONECT    6    7   14   20
CONECT    7    8   21   22
CONECT    8    9   23   24
CONECT    9   10   11   25
CONECT   10   26   27   28
CONECT   11   12   14
CONECT   12   13   29   30
CONECT   13   31   32
CONECT   14   15   16
CONECT   15   33   34   35
CONECT   16   36   37   38
END

HMDB0035747
     RDKit          3D
Patchoulenone
 38 40  0  0  0  0  0  0  0  0999 V2000
    3.4531    0.0408    1.3331 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2675    0.0199    0.3746 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0222    0.0954    0.7435 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1010    0.2147    1.9112 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4393    0.0921    3.1132 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2609    0.4998    1.3865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9806   -0.8274    1.3086 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0413   -1.8420    0.7191 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3527   -1.3796   -0.5329 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1422   -1.6606   -1.7631 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1266    0.0478   -0.4219 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9996    0.4425   -1.5488 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3483   -0.0851   -1.0869 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9313    1.0139   -0.0227 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3358    2.3678    0.1747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1114    1.0997   -0.9001 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8377    1.0735    1.4401 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1740   -0.3519    2.3097 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1886   -0.6544    0.8779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7890    1.2509    1.9836 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9543   -0.7730    0.8050 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1364   -1.1386    2.3830 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2935   -2.1382    1.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5785   -2.7955    0.4582 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5926   -1.9989   -0.6030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1486   -2.0476   -1.4277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2202   -0.8308   -2.4719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7186   -2.5263   -2.3530 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6964   -0.1270   -2.4556 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0106    1.4938   -1.8172 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5608   -1.0934   -1.4657 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1244    0.6560   -1.4248 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5038    2.3780    0.9235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0238    2.8811   -0.7311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1280    3.0129    0.6513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7588    1.9361   -0.5122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7553    0.2248   -0.9602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7852    1.4289   -1.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 11 14  1  0
 14 15  1  0
 14 16  1  0
 13  2  1  0
 11  3  1  0
 14  6  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  6 20  1  0
  7 21  1  0
  7 22  1  0
  8 23  1  0
  8 24  1  0
  9 25  1  0
 10 26  1  0
 10 27  1  0
 10 28  1  0
 12 29  1  0
 12 30  1  0
 13 31  1  0
 13 32  1  0
 15 33  1  0
 15 34  1  0
 15 35  1  0
 16 36  1  0
 16 37  1  0
 16 38  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
4-Patchoulen-6-one	HMDB
8-Oxocyperene	HMDB
Narucinone	HMDB

Chemical Formula

C₁₅H₂₂O

Average Molecular Weight

218.3346

Monoisotopic Molecular Weight

218.167065326

IUPAC Name

4,10,11,11-tetramethyltricyclo[5.3.1.0¹,⁵]undec-4-en-6-one

Traditional Name

4,10,11,11-tetramethyltricyclo[5.3.1.0¹,⁵]undec-4-en-6-one

CAS Registry Number

5986-54-9

SMILES

CC1CCC2C(=O)C3=C(C)CCC13C2(C)C

InChI Identifier

InChI=1S/C15H22O/c1-9-7-8-15-10(2)5-6-11(14(15,3)4)13(16)12(9)15/h10-11H,5-8H2,1-4H3

InChI Key

JAWSHISYWRRQQQ-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Not Available

Substituents

Not Available

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cytoplasm (HMDB: HMDB0035747)
Cell membrane (HMDB: HMDB0035747)

Cellular substructure

Extracellular (HMDB: HMDB0035747)
Membrane (HMDB: HMDB0035747)

Route of exposure

Enteral

Ingestion (HMDB: HMDB0035747)

Source

Endogenous

Endogenous (HMDB: HMDB0035747)

Plant

Plant (HMDB: HMDB0035747)

Animal

Animal (HMDB: HMDB0035747)

Exogenous

Food

Food (HMDB: HMDB0035747)

Vegetable

Root vegetable

Root vegetables (FooDB: FOOD00873)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid peroxidation (HMDB: HMDB0035747)

Biochemical process

Fatty acid metabolism (HMDB: HMDB0035747)

Cellular process

Cell signaling (HMDB: HMDB0035747)

Biochemical pathway

Lipid metabolism pathway (HMDB: HMDB0035747)

Role

Biological role

Membrane stabilizer (HMDB: HMDB0035747)

Nutrient

Nutrient (HMDB: HMDB0035747)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0035747)

Emulsifier (HMDB: HMDB0035747)

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	52.5 °C	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.1 g/L	ALOGPS
logP	3.84	ALOGPS
logP	3.65	ChemAxon
logS	-3.3	ALOGPS
pKa (Strongest Basic)	-5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	17.07 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	66.15 m³·mol⁻¹	ChemAxon
Polarizability	25.7 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	150.854	31661259
DarkChem	[M-H]-	148.232	31661259
DeepCCS	[M-2H]-	192.924	30932474
DeepCCS	[M+Na]+	168.488	30932474
AllCCS	[M+H]+	149.5	32859911
AllCCS	[M+H-H2O]+	145.7	32859911
AllCCS	[M+NH4]+	153.1	32859911
AllCCS	[M+Na]+	154.1	32859911
AllCCS	[M-H]-	159.0	32859911
AllCCS	[M+Na-2H]-	159.2	32859911
AllCCS	[M+HCOO]-	159.5	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Patchoulenone	CC1CCC2C(=O)C3=C(C)CCC13C2(C)C	2167.4	Standard polar	33892256
Patchoulenone	CC1CCC2C(=O)C3=C(C)CCC13C2(C)C	1627.1	Standard non polar	33892256
Patchoulenone	CC1CCC2C(=O)C3=C(C)CCC13C2(C)C	1676.1	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Patchoulenone,1TMS,isomer #1	CC1=C2C(O[Si](C)(C)C)=C3CCC(C)C2(CC1)C3(C)C	1782.7	Semi standard non polar	33892256
Patchoulenone,1TMS,isomer #1	CC1=C2C(O[Si](C)(C)C)=C3CCC(C)C2(CC1)C3(C)C	1675.7	Standard non polar	33892256
Patchoulenone,1TBDMS,isomer #1	CC1=C2C(O[Si](C)(C)C(C)(C)C)=C3CCC(C)C2(CC1)C3(C)C	1977.1	Semi standard non polar	33892256
Patchoulenone,1TBDMS,isomer #1	CC1=C2C(O[Si](C)(C)C(C)(C)C)=C3CCC(C)C2(CC1)C3(C)C	1908.3	Standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Patchoulenone GC-MS (Non-derivatized) - 70eV, Positive	splash10-0k9f-5940000000-1e49080bef4c39707772	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Patchoulenone GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Patchoulenone 10V, Positive-QTOF	splash10-014i-0190000000-a5fb40e981c453a686de	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Patchoulenone 20V, Positive-QTOF	splash10-02t9-1930000000-8b699c62ddcbb279ff8b	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Patchoulenone 40V, Positive-QTOF	splash10-0r04-6900000000-82a5320ca1c86ea0e12d	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Patchoulenone 10V, Negative-QTOF	splash10-014i-0090000000-b8cc99cefd8775148568	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Patchoulenone 20V, Negative-QTOF	splash10-014i-0190000000-5375e1e05ce3452a3126	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Patchoulenone 40V, Negative-QTOF	splash10-0gw0-0910000000-8830d49fb6d3873a2cad	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Patchoulenone 10V, Negative-QTOF	splash10-014i-0090000000-868e2fb00a2cfbf6c529	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Patchoulenone 20V, Negative-QTOF	splash10-014i-0090000000-868e2fb00a2cfbf6c529	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Patchoulenone 40V, Negative-QTOF	splash10-014i-0190000000-3afb003017aaa7ff3c07	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Patchoulenone 10V, Positive-QTOF	splash10-014i-0090000000-eda9112d52fe3b01c3ae	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Patchoulenone 20V, Positive-QTOF	splash10-014i-0390000000-438b079d2289266965bc	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Patchoulenone 40V, Positive-QTOF	splash10-052u-1910000000-54fa29124d71f0b89f12	2021-09-24	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB014477

KNApSAcK ID

C00021287

Chemspider ID

4478514

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5320424

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for Patchoulenone (HMDB0035747)

MOL for HMDB0035747 (Patchoulenone)

3D MOL for HMDB0035747 (Patchoulenone)

3D SDF for HMDB0035747 (Patchoulenone)

3D-SDF for HMDB0035747 (Patchoulenone)

PDB for HMDB0035747 (Patchoulenone)

3D PDB for HMDB0035747 (Patchoulenone)

SMILES for HMDB0035747 (Patchoulenone)

INCHI for HMDB0035747 (Patchoulenone)

Structure for HMDB0035747 (Patchoulenone)

3D Structure for HMDB0035747 (Patchoulenone)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra