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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 21:10:53 UTC
Update Date2023-02-21 17:25:05 UTC
HMDB IDHMDB0036115
Secondary Accession Numbers
  • HMDB36115
Metabolite Identification
Common Name(-)-3-Isothujone
Description(-)-3-Isothujone is found in alcoholic beverages. Ingredient of absinthe. Presence in food and beverages regulated by legislation.Thujone is a ketone and a monoterpene that occurs naturally in two diastereomeric forms: (-)-alpha-thujone and (+)-beta-thujone. It has a menthol odor. In addition to (-)-alpha-thujone and (+)-beta-thujone, there are their enantiomeric forms, (+)-alpha-thujone and (-)-beta-thujone. (Wikipedia
Structure
Data?1677000305
Synonyms
ValueSource
(-)-3-ThujanoneChEBI
(1S,4R,5R)-(-)-3-ThujanoneChEBI
(1S,4R,5R)-1-Isopropyl-4-methylbicyclo[3.1.0]hexan-3-oneChEBI
[1S-(1alpha,4alpha,5alpha)]-4-Methyl-1-(1-methylethyl)bicyclo[3.1.0]hexan-3-oneChEBI
alpha-ThujoneChEBI
L-ThujoneChEBI
ThujonChEBI
ThujoneChEBI
[1S-(1a,4a,5a)]-4-Methyl-1-(1-methylethyl)bicyclo[3.1.0]hexan-3-oneGenerator
[1S-(1Α,4α,5α)]-4-methyl-1-(1-methylethyl)bicyclo[3.1.0]hexan-3-oneGenerator
a-ThujoneGenerator
Α-thujoneGenerator
(-)-a-ThujoneHMDB
(-)-alpha-ThujoneHMDB
(-)-IsothujoneHMDB
(-)-ThujoneHMDB, MeSH
(-)-trans-ThujoneHMDB
(1S,4R,5R)-Thujan-3-oneHMDB
alpha-(-)-ThujoneHMDB
L-alpha-ThujoneHMDB
3-IsothujoneMeSH, HMDB
3-ThujanoneMeSH, HMDB
beta-Thujone, 1S-(1alpha,4beta,5alpha)-isomerMeSH, HMDB
beta-ThujoneMeSH, HMDB
beta-Thujone, (1S-(1alpha,4alpha,5alpha))-isomerMeSH, HMDB
beta-Thujone, (1alpha,4alpha,5alpha)-isomerMeSH, HMDB
(-)-3-IsothujoneKEGG
(+)-ThujoneMeSH
cis-ThujoneMeSH
alpha, beta-ThujoneMeSH
(1S,4R,5R)-4-Methyl-1-(1-methylethyl)bicyclo[3.1.0]hexan-3-onePhytoBank
(-)-α-ThujonePhytoBank
AbsintholPhytoBank
Chemical FormulaC10H16O
Average Molecular Weight152.2334
Monoisotopic Molecular Weight152.120115134
IUPAC Name(1S,4R,5R)-4-methyl-1-(propan-2-yl)bicyclo[3.1.0]hexan-3-one
Traditional Namethujone
CAS Registry Number546-80-5
SMILES
CC(C)[C@@]12C[C@@H]1[C@@H](C)C(=O)C2
InChI Identifier
InChI=1S/C10H16O/c1-6(2)10-4-8(10)7(3)9(11)5-10/h6-8H,4-5H2,1-3H3/t7-,8-,10+/m1/s1
InChI KeyUSMNOWBWPHYOEA-MRTMQBJTSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as bicyclic monoterpenoids. These are monoterpenoids containing exactly 2 rings, which are fused to each other.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassMonoterpenoids
Direct ParentBicyclic monoterpenoids
Alternative Parents
Substituents
  • Bicyclic monoterpenoid
  • Thujane monoterpenoid
  • Cyclic ketone
  • Ketone
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External Descriptors
Ontology
Physiological effect
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point< 25 °CNot Available
Boiling Point200.00 to 201.00 °C. @ 760.00 mm HgThe Good Scents Company Information System
Water Solubility407.7 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP2.044 (est)The Good Scents Company Information System
Experimental Chromatographic Properties

Experimental Collision Cross Sections

Adduct TypeData SourceCCS Value (Å2)Reference
[M+H]+Not Available141.825http://allccs.zhulab.cn/database/detail?ID=AllCCS00001981
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.44 g/LALOGPS
logP1.74ALOGPS
logP2.28ChemAxon
logS-2.5ALOGPS
pKa (Strongest Basic)-7.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area17.07 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity44.54 m³·mol⁻¹ChemAxon
Polarizability17.94 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+138.20331661259
DarkChem[M-H]-136.04131661259
DeepCCS[M-2H]-173.91230932474
DeepCCS[M+Na]+148.96630932474
AllCCS[M+H]+132.232859911
AllCCS[M+H-H2O]+128.032859911
AllCCS[M+NH4]+136.232859911
AllCCS[M+Na]+137.332859911
AllCCS[M-H]-137.932859911
AllCCS[M+Na-2H]-139.132859911
AllCCS[M+HCOO]-140.532859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.4.28 minutes32390414
Predicted by Siyang on May 30, 202215.0176 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.13 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2041.6 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid518.1 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid185.0 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid299.6 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid306.2 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid579.8 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid674.2 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)81.2 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1121.7 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid408.4 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1338.9 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid346.3 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid385.1 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate383.1 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA445.3 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water24.1 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(-)-3-IsothujoneCC(C)[C@@]12C[C@@H]1[C@@H](C)C(=O)C21519.4Standard polar33892256
(-)-3-IsothujoneCC(C)[C@@]12C[C@@H]1[C@@H](C)C(=O)C21130.1Standard non polar33892256
(-)-3-IsothujoneCC(C)[C@@]12C[C@@H]1[C@@H](C)C(=O)C21097.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(-)-3-Isothujone,1TMS,isomer #1CC1=C(O[Si](C)(C)C)C[C@]2(C(C)C)C[C@H]121290.3Semi standard non polar33892256
(-)-3-Isothujone,1TMS,isomer #1CC1=C(O[Si](C)(C)C)C[C@]2(C(C)C)C[C@H]121341.1Standard non polar33892256
(-)-3-Isothujone,1TMS,isomer #2CC(C)[C@]12C=C(O[Si](C)(C)C)[C@H](C)[C@H]1C21220.7Semi standard non polar33892256
(-)-3-Isothujone,1TMS,isomer #2CC(C)[C@]12C=C(O[Si](C)(C)C)[C@H](C)[C@H]1C21300.1Standard non polar33892256
(-)-3-Isothujone,1TBDMS,isomer #1CC1=C(O[Si](C)(C)C(C)(C)C)C[C@]2(C(C)C)C[C@H]121520.9Semi standard non polar33892256
(-)-3-Isothujone,1TBDMS,isomer #1CC1=C(O[Si](C)(C)C(C)(C)C)C[C@]2(C(C)C)C[C@H]121549.2Standard non polar33892256
(-)-3-Isothujone,1TBDMS,isomer #2CC(C)[C@]12C=C(O[Si](C)(C)C(C)(C)C)[C@H](C)[C@H]1C21436.0Semi standard non polar33892256
(-)-3-Isothujone,1TBDMS,isomer #2CC(C)[C@]12C=C(O[Si](C)(C)C(C)(C)C)[C@H](C)[C@H]1C21487.2Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - (-)-3-Isothujone EI-B (Non-derivatized)splash10-0159-9100000000-9e3f8c13550e0c33d6032017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - (-)-3-Isothujone EI-B (Non-derivatized)splash10-0159-9100000000-9e3f8c13550e0c33d6032018-05-18HMDB team, MONA, MassBankView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (-)-3-Isothujone GC-MS (Non-derivatized) - 70eV, Positivesplash10-00ou-9300000000-5ac67463cc6dff4e26c52017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (-)-3-Isothujone GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-3-Isothujone 10V, Positive-QTOFsplash10-0udi-0900000000-e5a1ab6ee8fcd2e7222d2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-3-Isothujone 20V, Positive-QTOFsplash10-0udi-7900000000-e4ab468ffb3afaf161292016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-3-Isothujone 40V, Positive-QTOFsplash10-0pe9-9000000000-960a6c7d4901afec92332016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-3-Isothujone 10V, Negative-QTOFsplash10-0udi-0900000000-07a82b9f8d15764ed9042016-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-3-Isothujone 20V, Negative-QTOFsplash10-0udi-0900000000-65761ceb0d88aa809b6a2016-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-3-Isothujone 40V, Negative-QTOFsplash10-0006-9500000000-4023ebf09d9995d371112016-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-3-Isothujone 10V, Negative-QTOFsplash10-0udi-0900000000-c373c9eea3cebf186f532021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-3-Isothujone 20V, Negative-QTOFsplash10-0udi-0900000000-e8b89c21a7958e1852782021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-3-Isothujone 40V, Negative-QTOFsplash10-0pdl-7900000000-5c5ad8968d995b2431ac2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-3-Isothujone 10V, Positive-QTOFsplash10-0006-8900000000-a32be7e7fd99fd0b8b232021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-3-Isothujone 20V, Positive-QTOFsplash10-000x-9300000000-eac02498908e1d67934a2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-3-Isothujone 40V, Positive-QTOFsplash10-0006-9400000000-22a79a891aa2c60d074e2021-09-25Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB014962
KNApSAcK IDC00003064
Chemspider ID229574
KEGG Compound IDC09906
BioCyc IDCPD-14067
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound261491
PDB IDNot Available
ChEBI ID9577
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1048021
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.