Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 21:40:51 UTC
Update Date2022-03-07 02:54:57 UTC
HMDB IDHMDB0036527
Secondary Accession Numbers
  • HMDB36527
Metabolite Identification
Common NameMyricanol 5-[arabinosyl-(1->6)-glucoside]
DescriptionMyricanol 5-[arabinosyl-(1->6)-glucoside] belongs to the class of organic compounds known as meta,meta-bridged biphenyls. These are cyclic diarylheptanoids where the two aryl groups are linked to each other by an ether group conjugated to their 3-position. Myricanol 5-[arabinosyl-(1->6)-glucoside] is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, myricanol 5-[arabinosyl-(1->6)-glucoside] has been detected, but not quantified in, fruits. This could make myricanol 5-[arabinosyl-(1->6)-glucoside] a potential biomarker for the consumption of these foods.
Structure
Data?1563862886
SynonymsNot Available
Chemical FormulaC32H44O15
Average Molecular Weight668.6828
Monoisotopic Molecular Weight668.268020738
IUPAC Name2-({11,17-dihydroxy-3,4-dimethoxytricyclo[12.3.1.1²,⁶]nonadeca-1(17),2,4,6(19),14(18),15-hexaen-5-yl}oxy)-6-({[3,4,5-trihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}methyl)oxane-3,4,5-triol
Traditional Name2-({11,17-dihydroxy-3,4-dimethoxytricyclo[12.3.1.1²,⁶]nonadeca-1(17),2,4,6(19),14(18),15-hexaen-5-yl}oxy)-6-({[3,4,5-trihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}methyl)oxane-3,4,5-triol
CAS Registry NumberNot Available
SMILES
COC1=C(OC2OC(COC3OC(O)(CO)C(O)C3O)C(O)C(O)C2O)C2=CC(=C1OC)C1=C(O)C=CC(CCC(O)CCCC2)=C1
InChI Identifier
InChI=1S/C32H44O15/c1-42-27-19-12-16(5-3-4-6-17(34)9-7-15-8-10-20(35)18(19)11-15)26(28(27)43-2)46-31-24(38)23(37)22(36)21(45-31)13-44-30-25(39)29(40)32(41,14-33)47-30/h8,10-12,17,21-25,29-31,33-41H,3-7,9,13-14H2,1-2H3
InChI KeyXNUIYJUJZLMXMW-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as meta,meta-bridged biphenyls. These are cyclic diarylheptanoids where the two aryl groups are linked to each other by an ether group conjugated to their 3-position.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassDiarylheptanoids
Sub ClassCyclic diarylheptanoids
Direct ParentMeta,meta-bridged biphenyls
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.6 g/LALOGPS
logP0.66ALOGPS
logP0.5ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)9.66ChemAxon
pKa (Strongest Basic)-3.5ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count15ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area237.45 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity161.1 m³·mol⁻¹ChemAxon
Polarizability67.3 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+244.83931661259
DarkChem[M-H]-236.20731661259
DeepCCS[M+H]+250.97530932474
DeepCCS[M-H]-249.0830932474
DeepCCS[M-2H]-282.32230932474
DeepCCS[M+Na]+256.72330932474
AllCCS[M+H]+244.232859911
AllCCS[M+H-H2O]+243.632859911
AllCCS[M+NH4]+244.832859911
AllCCS[M+Na]+244.932859911
AllCCS[M-H]-234.032859911
AllCCS[M+Na-2H]-237.232859911
AllCCS[M+HCOO]-240.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Myricanol 5-[arabinosyl-(1->6)-glucoside]COC1=C(OC2OC(COC3OC(O)(CO)C(O)C3O)C(O)C(O)C2O)C2=CC(=C1OC)C1=C(O)C=CC(CCC(O)CCCC2)=C14270.8Standard polar33892256
Myricanol 5-[arabinosyl-(1->6)-glucoside]COC1=C(OC2OC(COC3OC(O)(CO)C(O)C3O)C(O)C(O)C2O)C2=CC(=C1OC)C1=C(O)C=CC(CCC(O)CCCC2)=C15079.8Standard non polar33892256
Myricanol 5-[arabinosyl-(1->6)-glucoside]COC1=C(OC2OC(COC3OC(O)(CO)C(O)C3O)C(O)C(O)C2O)C2=CC(=C1OC)C1=C(O)C=CC(CCC(O)CCCC2)=C15337.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (Non-derivatized) - 70eV, Positivesplash10-0k9i-6021129000-186ec6fc8f4734d5f3b72017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_1_4) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_1_5) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_1_6) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_1_7) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_1_8) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_1_9) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_3) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_4) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_5) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_6) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_7) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_8) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_9) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_10) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_11) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_12) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_13) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_14) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] GC-MS (TMS_2_15) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] 10V, Positive-QTOFsplash10-0zfu-0009017000-fcb44bd5f3d29cb5b2c72016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] 20V, Positive-QTOFsplash10-052f-0109011000-8f50553f0641461927002016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] 40V, Positive-QTOFsplash10-0a4l-1319000000-7025f2a9280e7f3858462016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] 10V, Negative-QTOFsplash10-066s-3237089000-c171aaa821922a6494352016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] 20V, Negative-QTOFsplash10-05mw-1509002000-ebbace1ffe31996311472016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] 40V, Negative-QTOFsplash10-0a4l-1229000000-ec063b92165fb6addf182016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] 10V, Negative-QTOFsplash10-03xr-0000092000-af9cb72d8fea33172d082021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] 20V, Negative-QTOFsplash10-0pyi-7901181000-0a2273f9316b672eceba2021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] 40V, Negative-QTOFsplash10-0a4l-4009010000-da9b3c8a5306a262f4a02021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] 10V, Positive-QTOFsplash10-0006-0009002000-165ff4f445367e9a40a42021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] 20V, Positive-QTOFsplash10-0f79-2404945000-b6f3525ec9ce6415747f2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Myricanol 5-[arabinosyl-(1->6)-glucoside] 40V, Positive-QTOFsplash10-002b-2809210000-254810b81b3360a1003f2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB015427
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131752005
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .