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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 21:51:46 UTC
Update Date2022-03-07 02:55:01 UTC
HMDB IDHMDB0036696
Secondary Accession Numbers
  • HMDB36696
Metabolite Identification
Common NameYucalexin B'11
DescriptionYucalexin B'11 belongs to the class of organic compounds known as cyclic alcohols and derivatives. These are organic compounds containing an aliphatic ring substituted with at least one hydroxyl group. Yucalexin B'11 is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, yucalexin b'11 has been detected, but not quantified in, root vegetables. This could make yucalexin b'11 a potential biomarker for the consumption of these foods.
Structure
Data?1563862911
SynonymsNot Available
Chemical FormulaC19H26O3
Average Molecular Weight302.4079
Monoisotopic Molecular Weight302.188194698
IUPAC Name7-hydroxy-5,5,8,12-tetramethyltetracyclo[10.2.1.0¹,⁹.0⁴,⁸]pentadec-13-ene-6,11-dione
Traditional Name7-hydroxy-5,5,8,12-tetramethyltetracyclo[10.2.1.0¹,⁹.0⁴,⁸]pentadec-13-ene-6,11-dione
CAS Registry Number119642-80-7
SMILES
CC1(C)C2CCC34CC(C)(C=C3)C(=O)CC4C2(C)C(O)C1=O
InChI Identifier
InChI=1S/C19H26O3/c1-16(2)11-5-6-19-8-7-17(3,10-19)13(20)9-12(19)18(11,4)15(22)14(16)21/h7-8,11-12,15,22H,5-6,9-10H2,1-4H3
InChI KeyBSGGRZQAABTTBE-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cyclic alcohols and derivatives. These are organic compounds containing an aliphatic ring substituted with at least one hydroxyl group.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassAlcohols and polyols
Direct ParentCyclic alcohols and derivatives
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.039 g/LALOGPS
logP2.32ALOGPS
logP3.12ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)12.94ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area54.37 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity85.04 m³·mol⁻¹ChemAxon
Polarizability33.68 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+169.8931661259
DarkChem[M-H]-164.50831661259
DeepCCS[M-2H]-209.20130932474
DeepCCS[M+Na]+184.71830932474
AllCCS[M+H]+172.432859911
AllCCS[M+H-H2O]+169.332859911
AllCCS[M+NH4]+175.232859911
AllCCS[M+Na]+176.132859911
AllCCS[M-H]-181.632859911
AllCCS[M+Na-2H]-181.632859911
AllCCS[M+HCOO]-181.832859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Yucalexin B'11CC1(C)C2CCC34CC(C)(C=C3)C(=O)CC4C2(C)C(O)C1=O2793.5Standard polar33892256
Yucalexin B'11CC1(C)C2CCC34CC(C)(C=C3)C(=O)CC4C2(C)C(O)C1=O2289.1Standard non polar33892256
Yucalexin B'11CC1(C)C2CCC34CC(C)(C=C3)C(=O)CC4C2(C)C(O)C1=O2285.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Yucalexin B'11,1TMS,isomer #1CC12C=CC3(CCC4C(C)(C)C(=O)C(O[Si](C)(C)C)C4(C)C3CC1=O)C22420.9Semi standard non polar33892256
Yucalexin B'11,1TMS,isomer #2CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C)=C(O)C4(C)C3CC1=O)C22382.3Semi standard non polar33892256
Yucalexin B'11,1TMS,isomer #3CC12C=CC3(CCC4C(C)(C)C(=O)C(O)C4(C)C3C=C1O[Si](C)(C)C)C22519.0Semi standard non polar33892256
Yucalexin B'11,2TMS,isomer #1CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)C4(C)C3CC1=O)C22400.6Semi standard non polar33892256
Yucalexin B'11,2TMS,isomer #1CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)C4(C)C3CC1=O)C22429.6Standard non polar33892256
Yucalexin B'11,2TMS,isomer #2CC12C=CC3(CCC4C(C)(C)C(=O)C(O[Si](C)(C)C)C4(C)C3C=C1O[Si](C)(C)C)C22475.5Semi standard non polar33892256
Yucalexin B'11,2TMS,isomer #2CC12C=CC3(CCC4C(C)(C)C(=O)C(O[Si](C)(C)C)C4(C)C3C=C1O[Si](C)(C)C)C22358.8Standard non polar33892256
Yucalexin B'11,2TMS,isomer #3CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C)=C(O)C4(C)C3C=C1O[Si](C)(C)C)C22457.6Semi standard non polar33892256
Yucalexin B'11,2TMS,isomer #3CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C)=C(O)C4(C)C3C=C1O[Si](C)(C)C)C22274.5Standard non polar33892256
Yucalexin B'11,3TMS,isomer #1CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)C4(C)C3C=C1O[Si](C)(C)C)C22442.9Semi standard non polar33892256
Yucalexin B'11,3TMS,isomer #1CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)C4(C)C3C=C1O[Si](C)(C)C)C22399.9Standard non polar33892256
Yucalexin B'11,1TBDMS,isomer #1CC12C=CC3(CCC4C(C)(C)C(=O)C(O[Si](C)(C)C(C)(C)C)C4(C)C3CC1=O)C22670.0Semi standard non polar33892256
Yucalexin B'11,1TBDMS,isomer #2CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)=C(O)C4(C)C3CC1=O)C22627.6Semi standard non polar33892256
Yucalexin B'11,1TBDMS,isomer #3CC12C=CC3(CCC4C(C)(C)C(=O)C(O)C4(C)C3C=C1O[Si](C)(C)C(C)(C)C)C22770.1Semi standard non polar33892256
Yucalexin B'11,2TBDMS,isomer #1CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)C4(C)C3CC1=O)C22866.9Semi standard non polar33892256
Yucalexin B'11,2TBDMS,isomer #1CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)C4(C)C3CC1=O)C22923.4Standard non polar33892256
Yucalexin B'11,2TBDMS,isomer #2CC12C=CC3(CCC4C(C)(C)C(=O)C(O[Si](C)(C)C(C)(C)C)C4(C)C3C=C1O[Si](C)(C)C(C)(C)C)C22961.9Semi standard non polar33892256
Yucalexin B'11,2TBDMS,isomer #2CC12C=CC3(CCC4C(C)(C)C(=O)C(O[Si](C)(C)C(C)(C)C)C4(C)C3C=C1O[Si](C)(C)C(C)(C)C)C22777.1Standard non polar33892256
Yucalexin B'11,2TBDMS,isomer #3CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)=C(O)C4(C)C3C=C1O[Si](C)(C)C(C)(C)C)C22940.0Semi standard non polar33892256
Yucalexin B'11,2TBDMS,isomer #3CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)=C(O)C4(C)C3C=C1O[Si](C)(C)C(C)(C)C)C22665.1Standard non polar33892256
Yucalexin B'11,3TBDMS,isomer #1CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)C4(C)C3C=C1O[Si](C)(C)C(C)(C)C)C23148.3Semi standard non polar33892256
Yucalexin B'11,3TBDMS,isomer #1CC12C=CC3(CCC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)C4(C)C3C=C1O[Si](C)(C)C(C)(C)C)C22941.8Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Yucalexin B'11 GC-MS (Non-derivatized) - 70eV, Positivesplash10-00dl-2390000000-f533fe2100f90ec1aa372017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Yucalexin B'11 GC-MS (1 TMS) - 70eV, Positivesplash10-001j-1079000000-d7338fdf2146ba2741022017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Yucalexin B'11 GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Yucalexin B'11 10V, Positive-QTOFsplash10-0udi-0069000000-f087450b3db4270bfbd72015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Yucalexin B'11 20V, Positive-QTOFsplash10-0uk9-1392000000-df8260bb747716aac85a2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Yucalexin B'11 40V, Positive-QTOFsplash10-0a4i-1940000000-f5460dd771ae47a866a12015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Yucalexin B'11 10V, Negative-QTOFsplash10-0udi-0009000000-d43e322c46f5635f26462015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Yucalexin B'11 20V, Negative-QTOFsplash10-0udi-0039000000-48cd2b9f31dd70b4a96a2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Yucalexin B'11 40V, Negative-QTOFsplash10-014u-3190000000-421f20787975ec9332582015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Yucalexin B'11 10V, Negative-QTOFsplash10-0udi-0009000000-4360bacaf95498925fe52021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Yucalexin B'11 20V, Negative-QTOFsplash10-0udi-0009000000-4360bacaf95498925fe52021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Yucalexin B'11 40V, Negative-QTOFsplash10-0udr-0098000000-345d3080993b2e988e1b2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Yucalexin B'11 10V, Positive-QTOFsplash10-0udi-0039000000-cc9229e76682a1344f742021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Yucalexin B'11 20V, Positive-QTOFsplash10-0gbi-1192000000-98bf1f8b13fb00f221702021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Yucalexin B'11 40V, Positive-QTOFsplash10-0uei-3692000000-5c96cad67716bb4b9d762021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB015630
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound14191190
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .