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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 22:00:38 UTC
Update Date2022-03-07 02:55:05 UTC
HMDB IDHMDB0036832
Secondary Accession Numbers
  • HMDB36832
Metabolite Identification
Common NameSterebin D
DescriptionSterebin D belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Based on a literature review a small amount of articles have been published on Sterebin D.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC18H30O3
Average Molecular Weight294.429
Monoisotopic Molecular Weight294.219494826
IUPAC Name(3E)-4-(2,3-dihydroxy-2,5,5,8a-tetramethyl-decahydronaphthalen-1-yl)but-3-en-2-one
Traditional Name(3E)-4-(2,3-dihydroxy-2,5,5,8a-tetramethyl-hexahydro-1H-naphthalen-1-yl)but-3-en-2-one
CAS Registry NumberNot Available
SMILES
CC(=O)\C=C\C1C(C)(O)C(O)CC2C(C)(C)CCCC12C
InChI Identifier
InChI=1S/C18H30O3/c1-12(19)7-8-13-17(4)10-6-9-16(2,3)14(17)11-15(20)18(13,5)21/h7-8,13-15,20-21H,6,9-11H2,1-5H3/b8-7+
InChI KeyBQUAFPABUCARCY-BQYQJAHWSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentSesquiterpenoids
Alternative Parents
Substituents
  • Megastigmane sesquiterpenoid
  • Sesquiterpenoid
  • Acryloyl-group
  • Cyclic alcohol
  • Alpha,beta-unsaturated ketone
  • Tertiary alcohol
  • Enone
  • 1,2-diol
  • Secondary alcohol
  • Ketone
  • Organic oxygen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Alcohol
  • Organic oxide
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.068 g/LALOGPS
logP3.08ALOGPS
logP2.63ChemAxon
logS-3.6ALOGPS
pKa (Strongest Acidic)13.56ChemAxon
pKa (Strongest Basic)-3.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area57.53 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity85.25 m³·mol⁻¹ChemAxon
Polarizability34.36 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-200.45630932474
DeepCCS[M+Na]+175.66130932474
AllCCS[M+H]+172.032859911
AllCCS[M+H-H2O]+168.832859911
AllCCS[M+NH4]+174.932859911
AllCCS[M+Na]+175.732859911
AllCCS[M-H]-178.532859911
AllCCS[M+Na-2H]-179.232859911
AllCCS[M+HCOO]-180.132859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Sterebin DCC(=O)\C=C\C1C(C)(O)C(O)CC2C(C)(C)CCCC12C3263.0Standard polar33892256
Sterebin DCC(=O)\C=C\C1C(C)(O)C(O)CC2C(C)(C)CCCC12C2215.0Standard non polar33892256
Sterebin DCC(=O)\C=C\C1C(C)(O)C(O)CC2C(C)(C)CCCC12C2356.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Sterebin D,1TMS,isomer #1CC(=O)/C=C/C1C2(C)CCCC(C)(C)C2CC(O)C1(C)O[Si](C)(C)C2449.4Semi standard non polar33892256
Sterebin D,1TMS,isomer #2CC(=O)/C=C/C1C(C)(O)C(O[Si](C)(C)C)CC2C(C)(C)CCCC21C2446.0Semi standard non polar33892256
Sterebin D,1TMS,isomer #3C=C(/C=C/C1C(C)(O)C(O)CC2C(C)(C)CCCC21C)O[Si](C)(C)C2526.1Semi standard non polar33892256
Sterebin D,2TMS,isomer #1CC(=O)/C=C/C1C2(C)CCCC(C)(C)C2CC(O[Si](C)(C)C)C1(C)O[Si](C)(C)C2441.6Semi standard non polar33892256
Sterebin D,2TMS,isomer #2C=C(/C=C/C1C2(C)CCCC(C)(C)C2CC(O)C1(C)O[Si](C)(C)C)O[Si](C)(C)C2459.3Semi standard non polar33892256
Sterebin D,2TMS,isomer #3C=C(/C=C/C1C(C)(O)C(O[Si](C)(C)C)CC2C(C)(C)CCCC21C)O[Si](C)(C)C2447.5Semi standard non polar33892256
Sterebin D,3TMS,isomer #1C=C(/C=C/C1C2(C)CCCC(C)(C)C2CC(O[Si](C)(C)C)C1(C)O[Si](C)(C)C)O[Si](C)(C)C2441.6Semi standard non polar33892256
Sterebin D,3TMS,isomer #1C=C(/C=C/C1C2(C)CCCC(C)(C)C2CC(O[Si](C)(C)C)C1(C)O[Si](C)(C)C)O[Si](C)(C)C2426.0Standard non polar33892256
Sterebin D,1TBDMS,isomer #1CC(=O)/C=C/C1C2(C)CCCC(C)(C)C2CC(O)C1(C)O[Si](C)(C)C(C)(C)C2688.0Semi standard non polar33892256
Sterebin D,1TBDMS,isomer #2CC(=O)/C=C/C1C(C)(O)C(O[Si](C)(C)C(C)(C)C)CC2C(C)(C)CCCC21C2682.6Semi standard non polar33892256
Sterebin D,1TBDMS,isomer #3C=C(/C=C/C1C(C)(O)C(O)CC2C(C)(C)CCCC21C)O[Si](C)(C)C(C)(C)C2751.7Semi standard non polar33892256
Sterebin D,2TBDMS,isomer #1CC(=O)/C=C/C1C2(C)CCCC(C)(C)C2CC(O[Si](C)(C)C(C)(C)C)C1(C)O[Si](C)(C)C(C)(C)C2893.4Semi standard non polar33892256
Sterebin D,2TBDMS,isomer #2C=C(/C=C/C1C2(C)CCCC(C)(C)C2CC(O)C1(C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2911.4Semi standard non polar33892256
Sterebin D,2TBDMS,isomer #3C=C(/C=C/C1C(C)(O)C(O[Si](C)(C)C(C)(C)C)CC2C(C)(C)CCCC21C)O[Si](C)(C)C(C)(C)C2905.7Semi standard non polar33892256
Sterebin D,3TBDMS,isomer #1C=C(/C=C/C1C2(C)CCCC(C)(C)C2CC(O[Si](C)(C)C(C)(C)C)C1(C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3114.8Semi standard non polar33892256
Sterebin D,3TBDMS,isomer #1C=C(/C=C/C1C2(C)CCCC(C)(C)C2CC(O[Si](C)(C)C(C)(C)C)C1(C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3121.4Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Sterebin D GC-MS (Non-derivatized) - 70eV, Positivesplash10-0pkj-0590000000-59c4299bbb577861714c2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Sterebin D GC-MS (2 TMS) - 70eV, Positivesplash10-00di-6347900000-83a1a0cc08601c51525f2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Sterebin D GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Sterebin D GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin D 10V, Positive-QTOFsplash10-004j-0090000000-84b8b8e34573735e62d42016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin D 20V, Positive-QTOFsplash10-0a70-2090000000-54dc241f3af974dab2372016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin D 40V, Positive-QTOFsplash10-01c3-9350000000-4f1ebc749c23ff52524d2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin D 10V, Negative-QTOFsplash10-0006-0090000000-e36a41c717b9c1aa1cb42016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin D 20V, Negative-QTOFsplash10-002f-0090000000-6972506d029b2d44780f2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin D 40V, Negative-QTOFsplash10-0a6r-2090000000-87bb90949d636b46041f2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin D 10V, Positive-QTOFsplash10-0002-0290000000-b90560f50c4d842776082021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin D 20V, Positive-QTOFsplash10-07ji-9360000000-6c981a23af879a3679972021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin D 40V, Positive-QTOFsplash10-00ku-9210000000-a5586fb66a88b6aad7ad2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin D 10V, Negative-QTOFsplash10-0006-0090000000-7b598303b72de06237482021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin D 20V, Negative-QTOFsplash10-0006-0090000000-cfa810e2007c9ed3cc502021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Sterebin D 40V, Negative-QTOFsplash10-0a4i-0090000000-3209e20b9db60ff94aef2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB015783
KNApSAcK IDC00023381
Chemspider ID35014265
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound14396288
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.