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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 22:38:18 UTC

Update Date

2022-03-07 02:55:18 UTC

HMDB ID

HMDB0037393

Secondary Accession Numbers

HMDB37393

Metabolite Identification

Common Name

(3xi,7(11)Z)-7(11)-Copaene-4,12-diol

Description

(3xi,7(11)Z)-7(11)-Copaene-4,12-diol belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units (3xi,7(11)Z)-7(11)-Copaene-4,12-diol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0037393
     RDKit          3D
(3xi,7(11)Z)-7(11)-Copaene-4,12-diol
 41 43  0  0  0  0  0  0  0  0999 V2000
    2.2693    1.4800   -1.6719 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5765    0.4557   -0.6344 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9641    0.2685   -0.2341 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4148    1.5062    0.2877 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5843   -0.2390   -0.1263 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7915   -1.2715    0.9034 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5322   -1.3368    1.7429 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7250   -1.0757    0.9982 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9274   -1.5553    1.6935 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5628   -1.3901   -0.4599 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8523   -1.2918   -1.2308 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3786    0.1384   -1.2738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0838    0.7962    0.0431 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0319    2.3147   -0.1587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1212    0.5453    0.9067 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7300    0.4019    0.5851 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1573   -0.0341   -0.5638 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7542    1.0501   -2.5544 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1853    1.9797   -2.0520 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6677    2.2855   -1.1881 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1905   -0.4780    0.5146 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6505    0.0986   -1.1130 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6378    1.8736    0.7923 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9701   -2.2870    0.4531 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6123   -1.0847    1.6092 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4290   -2.3468    2.2319 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6523   -0.5878    2.5808 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8089   -1.7632    1.0958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1618   -0.8337    2.5310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6624   -2.5064    2.2346 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0742   -2.2365   -0.7219 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5925   -1.5633   -2.2961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6231   -1.9930   -0.9217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4795    0.1363   -1.4504 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9351    0.6962   -2.1330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1531    2.6164   -0.7472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9612    2.5641   -0.7260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1106    2.8326    0.8126 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9608    0.2653    0.4460 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2768    1.0841    1.3016 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0250    0.4853   -1.5060 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  2  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 13 16  1  0
 16 17  1  0
 17  5  1  0
 16  8  1  0
 17 10  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  3 21  1  0
  3 22  1  0
  4 23  1  0
  6 24  1  0
  6 25  1  0
  7 26  1  0
  7 27  1  0
  9 28  1  0
  9 29  1  0
  9 30  1  0
 10 31  1  0
 11 32  1  0
 11 33  1  0
 12 34  1  0
 12 35  1  0
 14 36  1  0
 14 37  1  0
 14 38  1  0
 15 39  1  0
 16 40  1  0
 17 41  1  0
M  END


  Mrv0541 05061309462D          

 17 19  0  0  0  0            999 V2000
    0.4038    0.4789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4301    0.7588    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0333    0.1322    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5695   -0.5062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1297   -1.2055    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9903   -1.2309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3865   -0.5014    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2990   -0.4863    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8448    0.1883    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2018    0.9191    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0133    0.9752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7364    0.5182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9843    0.2086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7709    0.9934    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1675    0.0930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5275   -0.6118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4773   -1.0370    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1 16  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  9  2  0  0  0  0
  4  5  1  0  0  0  0
  4 15  1  0  0  0  0
  5  6  1  0  0  0  0
  5 16  1  0  0  0  0
  6  7  1  0  0  0  0
  7 13  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0037393

> <DATABASE_NAME>
hmdb

> <SMILES>
C\C(CO)=C1\CCC2(C)C3CCC(C)(O)C2C13

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O2/c1-9(8-16)10-4-6-14(2)11-5-7-15(3,17)13(14)12(10)11/h11-13,16-17H,4-8H2,1-3H3/b10-9+

> <INCHI_KEY>
VCKNBYBUMOAFMV-MDZDMXLPSA-N

> <FORMULA>
C15H24O2

> <MOLECULAR_WEIGHT>
236.3499

> <EXACT_MASS>
236.177630012

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
27.883321275007138

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(8E)-8-(1-hydroxypropan-2-ylidene)-1,3-dimethyltricyclo[4.4.0.0²,⁷]decan-3-ol

> <ALOGPS_LOGP>
1.38

> <JCHEM_LOGP>
1.448493956333333

> <ALOGPS_LOGS>
-2.83

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.882097424822216

> <JCHEM_PKA_STRONGEST_BASIC>
-0.5143001694894521

> <JCHEM_POLAR_SURFACE_AREA>
40.46

> <JCHEM_REFRACTIVITY>
68.9581

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.51e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(8E)-8-(1-hydroxypropan-2-ylidene)-1,3-dimethyltricyclo[4.4.0.0²,⁷]decan-3-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0037393
     RDKit          3D
(3xi,7(11)Z)-7(11)-Copaene-4,12-diol
 41 43  0  0  0  0  0  0  0  0999 V2000
    2.2693    1.4800   -1.6719 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5765    0.4557   -0.6344 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9641    0.2685   -0.2341 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4148    1.5062    0.2877 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5843   -0.2390   -0.1263 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7915   -1.2715    0.9034 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5322   -1.3368    1.7429 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7250   -1.0757    0.9982 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9274   -1.5553    1.6935 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5628   -1.3901   -0.4599 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8523   -1.2918   -1.2308 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3786    0.1384   -1.2738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0838    0.7962    0.0431 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0319    2.3147   -0.1587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1212    0.5453    0.9067 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7300    0.4019    0.5851 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1573   -0.0341   -0.5638 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7542    1.0501   -2.5544 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1853    1.9797   -2.0520 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6677    2.2855   -1.1881 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1905   -0.4780    0.5146 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6505    0.0986   -1.1130 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6378    1.8736    0.7923 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9701   -2.2870    0.4531 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6123   -1.0847    1.6092 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4290   -2.3468    2.2319 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6523   -0.5878    2.5808 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8089   -1.7632    1.0958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1618   -0.8337    2.5310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6624   -2.5064    2.2346 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0742   -2.2365   -0.7219 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5925   -1.5633   -2.2961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6231   -1.9930   -0.9217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4795    0.1363   -1.4504 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9351    0.6962   -2.1330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1531    2.6164   -0.7472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9612    2.5641   -0.7260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1106    2.8326    0.8126 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9608    0.2653    0.4460 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2768    1.0841    1.3016 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0250    0.4853   -1.5060 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  2  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 13 16  1  0
 16 17  1  0
 17  5  1  0
 16  8  1  0
 17 10  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  3 21  1  0
  3 22  1  0
  4 23  1  0
  6 24  1  0
  6 25  1  0
  7 26  1  0
  7 27  1  0
  9 28  1  0
  9 29  1  0
  9 30  1  0
 10 31  1  0
 11 32  1  0
 11 33  1  0
 12 34  1  0
 12 35  1  0
 14 36  1  0
 14 37  1  0
 14 38  1  0
 15 39  1  0
 16 40  1  0
 17 41  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       0.754   0.894   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.803   1.416   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.929   0.247   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.063  -0.945   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.242  -2.250   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.848  -2.298   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.588  -0.936   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -4.292  -0.908   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.444   0.351   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.110   1.716   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -5.625   1.820   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       3.241   0.967   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.837   0.389   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       1.439   1.854   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       0.313   0.174   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.985  -1.142   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.758  -1.936   0.000  0.00  0.00           C+0
CONECT    1    2   16                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4    9                                                  
CONECT    4    3    5   15                                                  
CONECT    5    4    6   16                                                  
CONECT    6    5    7                                                       
CONECT    7    6   13                                                       
CONECT    8    9                                                            
CONECT    9    3    8   10                                                  
CONECT   10    9   11                                                       
CONECT   11   10                                                            
CONECT   12   13                                                            
CONECT   13    7   12   14   15                                             
CONECT   14   13                                                            
CONECT   15    4   13   16                                                  
CONECT   16    1    5   15   17                                             
CONECT   17   16                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   38    0
END

COMPND    HMDB0037393
HETATM    1  C1  UNL     1       2.269   1.480  -1.672  1.00  0.00           C  
HETATM    2  C2  UNL     1       2.576   0.456  -0.634  1.00  0.00           C  
HETATM    3  C3  UNL     1       3.964   0.268  -0.234  1.00  0.00           C  
HETATM    4  O1  UNL     1       4.415   1.506   0.288  1.00  0.00           O  
HETATM    5  C4  UNL     1       1.584  -0.239  -0.126  1.00  0.00           C  
HETATM    6  C5  UNL     1       1.791  -1.272   0.903  1.00  0.00           C  
HETATM    7  C6  UNL     1       0.532  -1.337   1.743  1.00  0.00           C  
HETATM    8  C7  UNL     1      -0.725  -1.076   0.998  1.00  0.00           C  
HETATM    9  C8  UNL     1      -1.927  -1.555   1.693  1.00  0.00           C  
HETATM   10  C9  UNL     1      -0.563  -1.390  -0.460  1.00  0.00           C  
HETATM   11  C10 UNL     1      -1.852  -1.292  -1.231  1.00  0.00           C  
HETATM   12  C11 UNL     1      -2.379   0.138  -1.274  1.00  0.00           C  
HETATM   13  C12 UNL     1      -2.084   0.796   0.043  1.00  0.00           C  
HETATM   14  C13 UNL     1      -2.032   2.315  -0.159  1.00  0.00           C  
HETATM   15  O2  UNL     1      -3.121   0.545   0.907  1.00  0.00           O  
HETATM   16  C14 UNL     1      -0.730   0.402   0.585  1.00  0.00           C  
HETATM   17  C15 UNL     1       0.157  -0.034  -0.564  1.00  0.00           C  
HETATM   18  H1  UNL     1       1.754   1.050  -2.554  1.00  0.00           H  
HETATM   19  H2  UNL     1       3.185   1.980  -2.052  1.00  0.00           H  
HETATM   20  H3  UNL     1       1.668   2.286  -1.188  1.00  0.00           H  
HETATM   21  H4  UNL     1       4.191  -0.478   0.515  1.00  0.00           H  
HETATM   22  H5  UNL     1       4.651   0.099  -1.113  1.00  0.00           H  
HETATM   23  H6  UNL     1       3.638   1.874   0.792  1.00  0.00           H  
HETATM   24  H7  UNL     1       1.970  -2.287   0.453  1.00  0.00           H  
HETATM   25  H8  UNL     1       2.612  -1.085   1.609  1.00  0.00           H  
HETATM   26  H9  UNL     1       0.429  -2.347   2.232  1.00  0.00           H  
HETATM   27  H10 UNL     1       0.652  -0.588   2.581  1.00  0.00           H  
HETATM   28  H11 UNL     1      -2.809  -1.763   1.096  1.00  0.00           H  
HETATM   29  H12 UNL     1      -2.162  -0.834   2.531  1.00  0.00           H  
HETATM   30  H13 UNL     1      -1.662  -2.506   2.235  1.00  0.00           H  
HETATM   31  H14 UNL     1       0.074  -2.236  -0.722  1.00  0.00           H  
HETATM   32  H15 UNL     1      -1.593  -1.563  -2.296  1.00  0.00           H  
HETATM   33  H16 UNL     1      -2.623  -1.993  -0.922  1.00  0.00           H  
HETATM   34  H17 UNL     1      -3.480   0.136  -1.450  1.00  0.00           H  
HETATM   35  H18 UNL     1      -1.935   0.696  -2.133  1.00  0.00           H  
HETATM   36  H19 UNL     1      -1.153   2.616  -0.747  1.00  0.00           H  
HETATM   37  H20 UNL     1      -2.961   2.564  -0.726  1.00  0.00           H  
HETATM   38  H21 UNL     1      -2.111   2.833   0.813  1.00  0.00           H  
HETATM   39  H22 UNL     1      -3.961   0.265   0.446  1.00  0.00           H  
HETATM   40  H23 UNL     1      -0.277   1.084   1.302  1.00  0.00           H  
HETATM   41  H24 UNL     1       0.025   0.485  -1.506  1.00  0.00           H  
CONECT    1    2   18   19   20
CONECT    2    3    5    5
CONECT    3    4   21   22
CONECT    4   23
CONECT    5    6   17
CONECT    6    7   24   25
CONECT    7    8   26   27
CONECT    8    9   10   16
CONECT    9   28   29   30
CONECT   10   11   17   31
CONECT   11   12   32   33
CONECT   12   13   34   35
CONECT   13   14   15   16
CONECT   14   36   37   38
CONECT   15   39
CONECT   16   17   40
CONECT   17   41
END

HMDB0037393
     RDKit          3D
(3xi,7(11)Z)-7(11)-Copaene-4,12-diol
 41 43  0  0  0  0  0  0  0  0999 V2000
    2.2693    1.4800   -1.6719 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5765    0.4557   -0.6344 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9641    0.2685   -0.2341 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4148    1.5062    0.2877 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5843   -0.2390   -0.1263 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7915   -1.2715    0.9034 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5322   -1.3368    1.7429 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7250   -1.0757    0.9982 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9274   -1.5553    1.6935 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5628   -1.3901   -0.4599 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8523   -1.2918   -1.2308 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3786    0.1384   -1.2738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0838    0.7962    0.0431 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0319    2.3147   -0.1587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1212    0.5453    0.9067 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7300    0.4019    0.5851 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1573   -0.0341   -0.5638 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7542    1.0501   -2.5544 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1853    1.9797   -2.0520 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6677    2.2855   -1.1881 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1905   -0.4780    0.5146 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6505    0.0986   -1.1130 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6378    1.8736    0.7923 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9701   -2.2870    0.4531 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6123   -1.0847    1.6092 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4290   -2.3468    2.2319 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6523   -0.5878    2.5808 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8089   -1.7632    1.0958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1618   -0.8337    2.5310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6624   -2.5064    2.2346 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0742   -2.2365   -0.7219 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5925   -1.5633   -2.2961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6231   -1.9930   -0.9217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4795    0.1363   -1.4504 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9351    0.6962   -2.1330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1531    2.6164   -0.7472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9612    2.5641   -0.7260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1106    2.8326    0.8126 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9608    0.2653    0.4460 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2768    1.0841    1.3016 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0250    0.4853   -1.5060 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  2  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 13 16  1  0
 16 17  1  0
 17  5  1  0
 16  8  1  0
 17 10  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  3 21  1  0
  3 22  1  0
  4 23  1  0
  6 24  1  0
  6 25  1  0
  7 26  1  0
  7 27  1  0
  9 28  1  0
  9 29  1  0
  9 30  1  0
 10 31  1  0
 11 32  1  0
 11 33  1  0
 12 34  1  0
 12 35  1  0
 14 36  1  0
 14 37  1  0
 14 38  1  0
 15 39  1  0
 16 40  1  0
 17 41  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₁₅H₂₄O₂

Average Molecular Weight

236.3499

Monoisotopic Molecular Weight

236.177630012

IUPAC Name

(8E)-8-(1-hydroxypropan-2-ylidene)-1,3-dimethyltricyclo[4.4.0.0²,⁷]decan-3-ol

Traditional Name

(8E)-8-(1-hydroxypropan-2-ylidene)-1,3-dimethyltricyclo[4.4.0.0²,⁷]decan-3-ol

CAS Registry Number

Not Available

SMILES

C\C(CO)=C1\CCC2(C)C3CCC(C)(O)C2C13

InChI Identifier

InChI=1S/C15H24O2/c1-9(8-16)10-4-6-14(2)11-5-7-15(3,17)13(14)12(10)11/h11-13,16-17H,4-8H2,1-3H3/b10-9+

InChI Key

VCKNBYBUMOAFMV-MDZDMXLPSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Not Available

Substituents

Not Available

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cell membrane (HMDB: HMDB0037393)

Cellular substructure

Route of exposure

Enteral

Ingestion (HMDB: HMDB0037393)

Source

Endogenous

Endogenous (HMDB: HMDB0037393)

Plant

Plant (HMDB: HMDB0037393)

Animal

Animal (HMDB: HMDB0037393)

Exogenous

Food

Food (HMDB: HMDB0037393)

Herb and spice

Herbs and Spices (FooDB: FOOD00866)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid peroxidation (HMDB: HMDB0037393)

Biochemical process

Fatty acid metabolism (HMDB: HMDB0037393)

Cellular process

Cell signaling (HMDB: HMDB0037393)

Biochemical pathway

Lipid metabolism pathway (HMDB: HMDB0037393)

Role

Biological role

Membrane stabilizer (HMDB: HMDB0037393)

Nutrient

Nutrient (HMDB: HMDB0037393)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0037393)

Emulsifier (HMDB: HMDB0037393)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.35 g/L	ALOGPS
logP	1.38	ALOGPS
logP	1.45	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	16.88	ChemAxon
pKa (Strongest Basic)	-0.51	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	40.46 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	68.96 m³·mol⁻¹	ChemAxon
Polarizability	27.88 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	154.947	31661259
DarkChem	[M-H]-	149.523	31661259
DeepCCS	[M-2H]-	202.85	30932474
DeepCCS	[M+Na]+	178.308	30932474
AllCCS	[M+H]+	155.7	32859911
AllCCS	[M+H-H2O]+	152.1	32859911
AllCCS	[M+NH4]+	159.0	32859911
AllCCS	[M+Na]+	159.9	32859911
AllCCS	[M-H]-	163.2	32859911
AllCCS	[M+Na-2H]-	163.4	32859911
AllCCS	[M+HCOO]-	163.8	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(3xi,7(11)Z)-7(11)-Copaene-4,12-diol	C\C(CO)=C1\CCC2(C)C3CCC(C)(O)C2C13	2935.4	Standard polar	33892256
(3xi,7(11)Z)-7(11)-Copaene-4,12-diol	C\C(CO)=C1\CCC2(C)C3CCC(C)(O)C2C13	1944.3	Standard non polar	33892256
(3xi,7(11)Z)-7(11)-Copaene-4,12-diol	C\C(CO)=C1\CCC2(C)C3CCC(C)(O)C2C13	1914.5	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
(3xi,7(11)Z)-7(11)-Copaene-4,12-diol,1TMS,isomer #1	C/C(CO[Si](C)(C)C)=C1/CCC2(C)C3CCC(C)(O)C2C13	2036.1	Semi standard non polar	33892256
(3xi,7(11)Z)-7(11)-Copaene-4,12-diol,1TMS,isomer #2	C/C(CO)=C1/CCC2(C)C3CCC(C)(O[Si](C)(C)C)C2C13	1980.7	Semi standard non polar	33892256
(3xi,7(11)Z)-7(11)-Copaene-4,12-diol,2TMS,isomer #1	C/C(CO[Si](C)(C)C)=C1/CCC2(C)C3CCC(C)(O[Si](C)(C)C)C2C13	2026.5	Semi standard non polar	33892256
(3xi,7(11)Z)-7(11)-Copaene-4,12-diol,1TBDMS,isomer #1	C/C(CO[Si](C)(C)C(C)(C)C)=C1/CCC2(C)C3CCC(C)(O)C2C13	2307.8	Semi standard non polar	33892256
(3xi,7(11)Z)-7(11)-Copaene-4,12-diol,1TBDMS,isomer #2	C/C(CO)=C1/CCC2(C)C3CCC(C)(O[Si](C)(C)C(C)(C)C)C2C13	2241.5	Semi standard non polar	33892256
(3xi,7(11)Z)-7(11)-Copaene-4,12-diol,2TBDMS,isomer #1	C/C(CO[Si](C)(C)C(C)(C)C)=C1/CCC2(C)C3CCC(C)(O[Si](C)(C)C(C)(C)C)C2C13	2501.1	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol GC-MS (Non-derivatized) - 70eV, Positive	splash10-00b9-3960000000-7aa75bc5655fe66745bf	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol GC-MS (2 TMS) - 70eV, Positive	splash10-016r-8389000000-5b5f9f86b5aa540b094a	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol 10V, Positive-QTOF	splash10-014r-0190000000-41ddd38c02db53428336	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol 20V, Positive-QTOF	splash10-0gb9-1390000000-5296be2f4682433bd1d1	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol 40V, Positive-QTOF	splash10-0udi-0590000000-57f4dda8b4d54422a93d	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol 10V, Negative-QTOF	splash10-000i-0090000000-b17f054d876ca6752d93	2016-08-04	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol 20V, Negative-QTOF	splash10-00kr-0290000000-df16a3dd43e7bae728b9	2016-08-04	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol 40V, Negative-QTOF	splash10-0550-2940000000-5f17750703263d01fba4	2016-08-04	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol 10V, Positive-QTOF	splash10-00p0-0790000000-952f5dff205a0aadc62f	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol 20V, Positive-QTOF	splash10-0gb9-0190000000-7898245fb5b463b872c6	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol 40V, Positive-QTOF	splash10-004i-1930000000-4af8bb09331fd631ebb0	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol 10V, Negative-QTOF	splash10-000i-0090000000-c0031dc201eac6b6350a	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol 20V, Negative-QTOF	splash10-000i-0090000000-c0031dc201eac6b6350a	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3xi,7(11)Z)-7(11)-Copaene-4,12-diol 40V, Negative-QTOF	splash10-0019-0090000000-27353df5e547181197a8	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Cytoplasm
Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB016436

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

131752182

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for (3xi,7(11)Z)-7(11)-Copaene-4,12-diol (HMDB0037393)

MOL for HMDB0037393 ((3xi,7(11)Z)-7(11)-Copaene-4,12-diol)

3D MOL for HMDB0037393 ((3xi,7(11)Z)-7(11)-Copaene-4,12-diol)

3D SDF for HMDB0037393 ((3xi,7(11)Z)-7(11)-Copaene-4,12-diol)

3D-SDF for HMDB0037393 ((3xi,7(11)Z)-7(11)-Copaene-4,12-diol)

PDB for HMDB0037393 ((3xi,7(11)Z)-7(11)-Copaene-4,12-diol)

3D PDB for HMDB0037393 ((3xi,7(11)Z)-7(11)-Copaene-4,12-diol)

SMILES for HMDB0037393 ((3xi,7(11)Z)-7(11)-Copaene-4,12-diol)

INCHI for HMDB0037393 ((3xi,7(11)Z)-7(11)-Copaene-4,12-diol)

Structure for HMDB0037393 ((3xi,7(11)Z)-7(11)-Copaene-4,12-diol)

3D Structure for HMDB0037393 ((3xi,7(11)Z)-7(11)-Copaene-4,12-diol)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra