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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 23:38:12 UTC
Update Date2022-03-07 02:55:43 UTC
HMDB IDHMDB0038343
Secondary Accession Numbers
  • HMDB38343
Metabolite Identification
Common Name13-Demethylspirolide C
Description13-Demethylspirolide C belongs to the class of organic compounds known as azepines. These are organic compounds containing an unsaturated seven-member heterocycle with one nitrogen atom replacing a carbon atom. Based on a literature review a significant number of articles have been published on 13-Demethylspirolide C.
Structure
Data?1563863181
Synonyms
ValueSource
13-Desmethylspirolide CHMDB
13-Desmethyl spirolide CHMDB
Chemical FormulaC42H61NO7
Average Molecular Weight691.9362
Monoisotopic Molecular Weight691.444803311
IUPAC Name5-[(10E)-9,32-dihydroxy-10,13,19,20,32-pentamethyl-27-methylidene-33,34,35-trioxa-22-azahexacyclo[27.3.1.1¹,⁴.1⁴,⁷.0¹²,¹⁷.0¹⁷,²³]pentatriaconta-10,13,22-trien-14-yl]-3-methyl-2,5-dihydrofuran-2-one
Traditional Name5-[(10E)-9,32-dihydroxy-10,13,19,20,32-pentamethyl-27-methylidene-33,34,35-trioxa-22-azahexacyclo[27.3.1.1¹,⁴.1⁴,⁷.0¹²,¹⁷.0¹⁷,²³]pentatriaconta-10,13,22-trien-14-yl]-3-methyl-5H-furan-2-one
CAS Registry Number334974-07-1
SMILES
CC1CN=C2CCCC(=C)CC3CCC(C)(O)C4(CCC5(CCC(CC(O)\C(C)=C\C6C(C)=C(CCC26CC1C)C1OC(=O)C(C)=C1)O5)O4)O3
InChI Identifier
InChI=1S/C42H61NO7/c1-25-9-8-10-37-40(23-28(4)29(5)24-43-37)15-13-33(36-21-27(3)38(45)47-36)30(6)34(40)20-26(2)35(44)22-32-12-16-41(48-32)17-18-42(50-41)39(7,46)14-11-31(19-25)49-42/h20-21,28-29,31-32,34-36,44,46H,1,8-19,22-24H2,2-7H3/b26-20+
InChI KeyTWYUDVVIPSUDIG-LHLOQNFPSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as azepines. These are organic compounds containing an unsaturated seven-member heterocycle with one nitrogen atom replacing a carbon atom.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassAzepines
Sub ClassNot Available
Direct ParentAzepines
Alternative Parents
Substituents
  • Azepine
  • Ketal
  • 2-furanone
  • Oxane
  • Dihydrofuran
  • Tertiary alcohol
  • Tetrahydrofuran
  • Enoate ester
  • Alpha,beta-unsaturated carboxylic ester
  • Carboxylic acid ester
  • Ketimine
  • Lactone
  • Secondary alcohol
  • Propargyl-type 1,3-dipolar organic compound
  • Organic 1,3-dipolar compound
  • Azacycle
  • Oxacycle
  • Carboxylic acid derivative
  • Monocarboxylic acid or derivatives
  • Acetal
  • Hydrocarbon derivative
  • Alcohol
  • Imine
  • Organopnictogen compound
  • Organonitrogen compound
  • Carbonyl group
  • Organic oxygen compound
  • Organooxygen compound
  • Organic oxide
  • Organic nitrogen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.00052 g/LALOGPS
logP4.65ALOGPS
logP7.11ChemAxon
logS-6.1ALOGPS
pKa (Strongest Acidic)13.11ChemAxon
pKa (Strongest Basic)6.88ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area106.81 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity196.01 m³·mol⁻¹ChemAxon
Polarizability77.36 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+255.57431661259
DarkChem[M-H]-246.79531661259
DeepCCS[M-2H]-295.83230932474
DeepCCS[M+Na]+270.45430932474
AllCCS[M+H]+256.832859911
AllCCS[M+H-H2O]+256.032859911
AllCCS[M+NH4]+257.532859911
AllCCS[M+Na]+257.732859911
AllCCS[M-H]-232.032859911
AllCCS[M+Na-2H]-237.132859911
AllCCS[M+HCOO]-242.732859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.8.12 minutes32390414
Predicted by Siyang on May 30, 202223.7764 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.39 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid70.0 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid4170.4 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid290.3 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid303.0 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid169.4 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid316.9 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid1215.0 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid1105.6 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)119.5 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid2103.2 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid840.9 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid2214.4 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid657.6 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid622.8 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate188.4 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA593.7 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water9.7 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
13-Demethylspirolide CCC1CN=C2CCCC(=C)CC3CCC(C)(O)C4(CCC5(CCC(CC(O)\C(C)=C\C6C(C)=C(CCC26CC1C)C1OC(=O)C(C)=C1)O5)O4)O34636.7Standard polar33892256
13-Demethylspirolide CCC1CN=C2CCCC(=C)CC3CCC(C)(O)C4(CCC5(CCC(CC(O)\C(C)=C\C6C(C)=C(CCC26CC1C)C1OC(=O)C(C)=C1)O5)O4)O34825.9Standard non polar33892256
13-Demethylspirolide CCC1CN=C2CCCC(=C)CC3CCC(C)(O)C4(CCC5(CCC(CC(O)\C(C)=C\C6C(C)=C(CCC26CC1C)C1OC(=O)C(C)=C1)O5)O4)O35024.2Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 13-Demethylspirolide C GC-MS (Non-derivatized) - 70eV, Positivesplash10-0200-5000019000-9a794c566386378457852017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-Demethylspirolide C GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-Demethylspirolide C GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-Demethylspirolide C GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-Demethylspirolide C GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-Demethylspirolide C GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethylspirolide C 10V, Positive-QTOFsplash10-00dl-0000009000-e7b6e2f21b578a82cf982017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethylspirolide C 20V, Positive-QTOFsplash10-0uk9-0000019000-68d49a7e8b50df5a41652017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethylspirolide C 40V, Positive-QTOFsplash10-0pdu-6000196000-1b51e9e7c5a3ddeaa0f02017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethylspirolide C 10V, Negative-QTOFsplash10-0006-0000009000-e1a4136a2b7f302630342017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethylspirolide C 20V, Negative-QTOFsplash10-006y-1000009000-fdc8aa94ee8d804b538d2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethylspirolide C 40V, Negative-QTOFsplash10-00g0-4000097000-ba2378001189665acf122017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethylspirolide C 10V, Positive-QTOFsplash10-0006-0000029000-ebd7bdc345be679726352021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethylspirolide C 20V, Positive-QTOFsplash10-006x-0000009000-816a7507ff80e745a2df2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethylspirolide C 40V, Positive-QTOFsplash10-0006-6000009000-2a78b361f862e063d7642021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethylspirolide C 10V, Negative-QTOFsplash10-0006-0000009000-231a6f18bdb887c8f1a42021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethylspirolide C 20V, Negative-QTOFsplash10-0006-0000009000-6ecbc2a6fc37670cdce92021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethylspirolide C 40V, Negative-QTOFsplash10-022c-4000009000-37650c0310cc26d532a32021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB017682
KNApSAcK IDC00038160
Chemspider ID10210002
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound21590537
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .