Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 23:45:16 UTC
Update Date2023-02-21 17:26:34 UTC
HMDB IDHMDB0038437
Secondary Accession Numbers
  • HMDB38437
Metabolite Identification
Common Name9-(Methylthio)nonanenitrile
Description9-(Methylthio)nonanenitrile belongs to the class of organic compounds known as nitriles. Nitriles are compounds having the structure RC#N; thus C-substituted derivatives of hydrocyanic acid, HC#N. 9-(Methylthio)nonanenitrile has been detected, but not quantified in, green vegetables. This could make 9-(methylthio)nonanenitrile a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on 9-(Methylthio)nonanenitrile.
Structure
Data?1677000394
Synonyms
ValueSource
1-cyano-8-(methylthio)OctaneHMDB
9-(methylthio)-NonanenitrileHMDB
9-(methylthio)Nonanenitrile, 9ciHMDB
9-MethylsulfanylnonanenitrileHMDB
9-MethylthiononanenitrileHMDB
9-(Methylsulphanyl)nonanenitrileGenerator
Chemical FormulaC10H19NS
Average Molecular Weight185.33
Monoisotopic Molecular Weight185.123820303
IUPAC Name9-(methylsulfanyl)nonanenitrile
Traditional Name9-(methylsulfanyl)nonanenitrile
CAS Registry Number58214-94-1
SMILES
CSCCCCCCCCC#N
InChI Identifier
InChI=1S/C10H19NS/c1-12-10-8-6-4-2-3-5-7-9-11/h2-8,10H2,1H3
InChI KeyKQKRRHTVZQEXBX-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as nitriles. Nitriles are compounds having the structure RC#N; thus C-substituted derivatives of hydrocyanic acid, HC#N.
KingdomOrganic compounds
Super ClassOrganic nitrogen compounds
ClassOrganonitrogen compounds
Sub ClassOrganic cyanides
Direct ParentNitriles
Alternative Parents
Substituents
  • Dialkylthioether
  • Sulfenyl compound
  • Thioether
  • Nitrile
  • Carbonitrile
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organosulfur compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility36.66 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.048 g/LALOGPS
logP4.06ALOGPS
logP3.4ChemAxon
logS-3.6ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area23.79 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity56.46 m³·mol⁻¹ChemAxon
Polarizability23.68 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+144.73831661259
DarkChem[M-H]-139.94431661259
DeepCCS[M+H]+149.33130932474
DeepCCS[M-H]-146.49930932474
DeepCCS[M-2H]-183.46430932474
DeepCCS[M+Na]+158.63330932474
AllCCS[M+H]+144.432859911
AllCCS[M+H-H2O]+140.832859911
AllCCS[M+NH4]+147.832859911
AllCCS[M+Na]+148.832859911
AllCCS[M-H]-152.932859911
AllCCS[M+Na-2H]-154.732859911
AllCCS[M+HCOO]-156.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
9-(Methylthio)nonanenitrileCSCCCCCCCCC#N2397.8Standard polar33892256
9-(Methylthio)nonanenitrileCSCCCCCCCCC#N1556.7Standard non polar33892256
9-(Methylthio)nonanenitrileCSCCCCCCCCC#N1630.4Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - 9-(Methylthio)nonanenitrile EI-B (Non-derivatized)splash10-03ea-9200000000-67ed2376446a82b0f7bb2017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - 9-(Methylthio)nonanenitrile EI-B (Non-derivatized)splash10-03ea-9200000000-67ed2376446a82b0f7bb2018-05-18HMDB team, MONA, MassBankView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-(Methylthio)nonanenitrile GC-MS (Non-derivatized) - 70eV, Positivesplash10-01ot-9300000000-b895be78dab270d1efe02017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-(Methylthio)nonanenitrile GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-(Methylthio)nonanenitrile GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(Methylthio)nonanenitrile 10V, Positive-QTOFsplash10-000i-0900000000-21c39cd3814bb58acb0f2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(Methylthio)nonanenitrile 20V, Positive-QTOFsplash10-01bi-3900000000-bfaef0b516c7fd8839c42016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(Methylthio)nonanenitrile 40V, Positive-QTOFsplash10-052f-9100000000-2a83f6bfa2f96f39b5c42016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(Methylthio)nonanenitrile 10V, Negative-QTOFsplash10-001j-5900000000-15a030f748ca462515402016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(Methylthio)nonanenitrile 20V, Negative-QTOFsplash10-0002-9200000000-6f7f5a220f31849a49a32016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(Methylthio)nonanenitrile 40V, Negative-QTOFsplash10-0002-9000000000-074b8554a56717daeca32016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(Methylthio)nonanenitrile 10V, Positive-QTOFsplash10-000i-6900000000-25b0b5ca65d94a71e3442021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(Methylthio)nonanenitrile 20V, Positive-QTOFsplash10-0a4i-9000000000-d2a5b18622976cdfc4192021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(Methylthio)nonanenitrile 40V, Positive-QTOFsplash10-0rka-9000000000-8a0fd611a363fbb0be352021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(Methylthio)nonanenitrile 10V, Negative-QTOFsplash10-001i-0900000000-efef419f48b51742fdbd2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(Methylthio)nonanenitrile 20V, Negative-QTOFsplash10-000t-9800000000-1d06f0539b46f712bee72021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-(Methylthio)nonanenitrile 40V, Negative-QTOFsplash10-0002-9100000000-e2708346f43d5b4e722e2021-09-24Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB017795
KNApSAcK IDC00054899
Chemspider ID84825
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound93987
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1632221
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .