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Showing metabocard for Methyl 4Z-octenoate (HMDB0039794)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 01:19:56 UTC
Update Date2023-02-21 17:27:09 UTC
HMDB IDHMDB0039794
Secondary Accession Numbers
  • HMDB39794
Metabolite Identification
Common NameMethyl 4Z-octenoate
DescriptionMethyl 4Z-octenoate belongs to the class of organic compounds known as fatty acid methyl esters. Fatty acid methyl esters are compounds containing a fatty acid that is esterified with a methyl group. They have the general structure RC(=O)OR', where R=fatty aliphatic tail or organyl group and R'=methyl group. Based on a literature review a small amount of articles have been published on Methyl 4Z-octenoate.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0039794 (Methyl 4Z-octenoate)

  Mrv0541 05061311242D          

 11 10  0  0  0  0            999 V2000
   -3.0493    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6204    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.9520    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  2  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  2  0  0  0  0
 11  2  1  0  0  0  0
 11  9  1  0  0  0  0
M  END
Download

3D MOL for HMDB0039794 (Methyl 4Z-octenoate)

HMDB0039794
     RDKit          3D
Methyl 4Z-octenoate
 27 26  0  0  0  0  0  0  0  0999 V2000
   -4.0744    0.4267    0.7408 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8876   -0.6628   -0.2934 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7563   -0.2108   -1.2071 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5432   -0.0371   -0.3688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4185   -0.7044   -0.5481 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7668   -0.4878    0.3250 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9194   -0.0208   -0.5340 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1094    0.1952    0.3528 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0522   -0.0076    1.5930 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3230    0.6271   -0.1539 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4306    0.8221    0.7111 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8713    1.3876    0.2453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4253    0.2372    1.6246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1537    0.3838    1.0498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8347   -0.7853   -0.8515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6365   -1.6155    0.2083 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6270   -1.0188   -1.9550 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0193    0.7037   -1.7329 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5773    0.6777    0.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3639   -1.4187   -1.3442 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5638    0.1896    1.1534 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0610   -1.4641    0.7536 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6329    0.8950   -1.0721 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1907   -0.7857   -1.2706 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2602    0.4115    1.7153 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5562    1.9234    0.8139 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3227    0.3387    0.2685 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
  1 12  1  0
  1 13  1  0
  1 14  1  0
  2 15  1  0
  2 16  1  0
  3 17  1  0
  3 18  1  0
  4 19  1  0
  5 20  1  0
  6 21  1  0
  6 22  1  0
  7 23  1  0
  7 24  1  0
 11 25  1  0
 11 26  1  0
 11 27  1  0
M  END
Download

3D SDF for HMDB0039794 (Methyl 4Z-octenoate)

  Mrv0541 05061311242D          

 11 10  0  0  0  0            999 V2000
   -3.0493    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6204    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.9520    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  2  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  2  0  0  0  0
 11  2  1  0  0  0  0
 11  9  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0039794

> <DATABASE_NAME>
hmdb

> <SMILES>
CCC\C=C\CCC(=O)OC

> <INCHI_IDENTIFIER>
InChI=1S/C9H16O2/c1-3-4-5-6-7-8-9(10)11-2/h5-6H,3-4,7-8H2,1-2H3/b6-5+

> <INCHI_KEY>
SSPBQLGVUAXSMH-AATRIKPKSA-N

> <FORMULA>
C9H16O2

> <MOLECULAR_WEIGHT>
156.2221

> <EXACT_MASS>
156.115029756

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_AVERAGE_POLARIZABILITY>
18.624435464222987

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
methyl (4E)-oct-4-enoate

> <ALOGPS_LOGP>
3.02

> <JCHEM_LOGP>
2.4840058569999997

> <ALOGPS_LOGS>
-2.54

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-7.027391600328582

> <JCHEM_POLAR_SURFACE_AREA>
26.3

> <JCHEM_REFRACTIVITY>
46.161300000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.54e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (4E)-oct-4-enoate

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for HMDB0039794 (Methyl 4Z-octenoate)

HMDB0039794
     RDKit          3D
Methyl 4Z-octenoate
 27 26  0  0  0  0  0  0  0  0999 V2000
   -4.0744    0.4267    0.7408 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8876   -0.6628   -0.2934 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7563   -0.2108   -1.2071 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5432   -0.0371   -0.3688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4185   -0.7044   -0.5481 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7668   -0.4878    0.3250 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9194   -0.0208   -0.5340 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1094    0.1952    0.3528 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0522   -0.0076    1.5930 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3230    0.6271   -0.1539 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4306    0.8221    0.7111 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8713    1.3876    0.2453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4253    0.2372    1.6246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1537    0.3838    1.0498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8347   -0.7853   -0.8515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6365   -1.6155    0.2083 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6270   -1.0188   -1.9550 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0193    0.7037   -1.7329 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5773    0.6777    0.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3639   -1.4187   -1.3442 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5638    0.1896    1.1534 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0610   -1.4641    0.7536 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6329    0.8950   -1.0721 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1907   -0.7857   -1.2706 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2602    0.4115    1.7153 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5562    1.9234    0.8139 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3227    0.3387    0.2685 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
  1 12  1  0
  1 13  1  0
  1 14  1  0
  2 15  1  0
  2 16  1  0
  3 17  1  0
  3 18  1  0
  4 19  1  0
  5 20  1  0
  6 21  1  0
  6 22  1  0
  7 23  1  0
  7 24  1  0
 11 25  1  0
 11 26  1  0
 11 27  1  0
M  END
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PDB for HMDB0039794 (Methyl 4Z-octenoate)

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      -5.692   1.334   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.311   2.104   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.358   2.104   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.025   1.334   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.691   2.104   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.357   1.334   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.976   2.104   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.644   2.104   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       3.644   3.644   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       4.977   1.334   0.000  0.00  0.00           O+0
CONECT    1    3                                                            
CONECT    2   11                                                            
CONECT    3    1    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    2    9                                                       
MASTER        0    0    0    0    0    0    0    0   11    0   20    0
END
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3D PDB for HMDB0039794 (Methyl 4Z-octenoate)

COMPND    HMDB0039794
HETATM    1  C1  UNL     1      -4.074   0.427   0.741  1.00  0.00           C  
HETATM    2  C2  UNL     1      -3.888  -0.663  -0.293  1.00  0.00           C  
HETATM    3  C3  UNL     1      -2.756  -0.211  -1.207  1.00  0.00           C  
HETATM    4  C4  UNL     1      -1.543  -0.037  -0.369  1.00  0.00           C  
HETATM    5  C5  UNL     1      -0.418  -0.704  -0.548  1.00  0.00           C  
HETATM    6  C6  UNL     1       0.767  -0.488   0.325  1.00  0.00           C  
HETATM    7  C7  UNL     1       1.919  -0.021  -0.534  1.00  0.00           C  
HETATM    8  C8  UNL     1       3.109   0.195   0.353  1.00  0.00           C  
HETATM    9  O1  UNL     1       3.052  -0.008   1.593  1.00  0.00           O  
HETATM   10  O2  UNL     1       4.323   0.627  -0.154  1.00  0.00           O  
HETATM   11  C9  UNL     1       5.431   0.822   0.711  1.00  0.00           C  
HETATM   12  H1  UNL     1      -3.871   1.388   0.245  1.00  0.00           H  
HETATM   13  H2  UNL     1      -3.425   0.237   1.625  1.00  0.00           H  
HETATM   14  H3  UNL     1      -5.154   0.384   1.050  1.00  0.00           H  
HETATM   15  H4  UNL     1      -4.835  -0.785  -0.852  1.00  0.00           H  
HETATM   16  H5  UNL     1      -3.636  -1.616   0.208  1.00  0.00           H  
HETATM   17  H6  UNL     1      -2.627  -1.019  -1.955  1.00  0.00           H  
HETATM   18  H7  UNL     1      -3.019   0.704  -1.733  1.00  0.00           H  
HETATM   19  H8  UNL     1      -1.577   0.678   0.439  1.00  0.00           H  
HETATM   20  H9  UNL     1      -0.364  -1.419  -1.344  1.00  0.00           H  
HETATM   21  H10 UNL     1       0.564   0.190   1.153  1.00  0.00           H  
HETATM   22  H11 UNL     1       1.061  -1.464   0.754  1.00  0.00           H  
HETATM   23  H12 UNL     1       1.633   0.895  -1.072  1.00  0.00           H  
HETATM   24  H13 UNL     1       2.191  -0.786  -1.271  1.00  0.00           H  
HETATM   25  H14 UNL     1       5.260   0.412   1.715  1.00  0.00           H  
HETATM   26  H15 UNL     1       5.556   1.923   0.814  1.00  0.00           H  
HETATM   27  H16 UNL     1       6.323   0.339   0.269  1.00  0.00           H  
CONECT    1    2   12   13   14
CONECT    2    3   15   16
CONECT    3    4   17   18
CONECT    4    5    5   19
CONECT    5    6   20
CONECT    6    7   21   22
CONECT    7    8   23   24
CONECT    8    9    9   10
CONECT   10   11
CONECT   11   25   26   27
END
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SMILES for HMDB0039794 (Methyl 4Z-octenoate)

CCC\C=C\CCC(=O)OC
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INCHI for HMDB0039794 (Methyl 4Z-octenoate)

InChI=1S/C9H16O2/c1-3-4-5-6-7-8-9(10)11-2/h5-6H,3-4,7-8H2,1-2H3/b6-5+
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View in JSmolView Stereo Labels
Synonyms
ValueSource
Methyl 4Z-octenoic acidGenerator
(Z)-Methyl 4-octenoateHMDB
4-Octenoic acid, methyl esterHMDB
cis-4-Octenoic acid, methyl esterHMDB
FEMA 3367HMDB
Methyl (4E)-4-octenoateHMDB
Methyl (4Z)-4-octenoateHMDB
Methyl (Z)-4-octenoateHMDB
Methyl (Z)-oct-4-enoateHMDB
Methyl cis-4-octenoateHMDB
Methyl ester(4Z)-4-octenoic acidHMDB
Methyl ester(Z)-4-octenoic acidHMDB
Chemical FormulaC9H16O2
Average Molecular Weight156.2221
Monoisotopic Molecular Weight156.115029756
IUPAC Namemethyl (4E)-oct-4-enoate
Traditional Namemethyl (4E)-oct-4-enoate
CAS Registry Number21063-71-8
SMILES
CCC\C=C\CCC(=O)OC
InChI Identifier
InChI=1S/C9H16O2/c1-3-4-5-6-7-8-9(10)11-2/h5-6H,3-4,7-8H2,1-2H3/b6-5+
InChI KeySSPBQLGVUAXSMH-AATRIKPKSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as fatty acid methyl esters. Fatty acid methyl esters are compounds containing a fatty acid that is esterified with a methyl group. They have the general structure RC(=O)OR', where R=fatty aliphatic tail or organyl group and R'=methyl group.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acid esters
Direct ParentFatty acid methyl esters
Alternative Parents
Substituents
  • Fatty acid methyl ester
  • Methyl ester
  • Carboxylic acid ester
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effect
Organoleptic effect
Disposition
Biological locationRoute of exposureSource
Process
Naturally occurring process
Role
Biological roleIndustrial application
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling Point72.00 °C. @ 11.00 mm HgThe Good Scents Company Information System
Water Solubility158.9 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP2.896 (est)The Good Scents Company Information System
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB019444
KNApSAcK IDNot Available
Chemspider ID4518535
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5366856
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1007001
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.