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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 01:23:59 UTC
Update Date2022-03-07 02:56:22 UTC
HMDB IDHMDB0039862
Secondary Accession Numbers
  • HMDB39862
Metabolite Identification
Common Name3-O-beta-D-Galactopyranosylproanthocyanidin A5'
Description3-O-beta-D-Galactopyranosylproanthocyanidin A5' belongs to the class of organic compounds known as biflavonoids and polyflavonoids. These are organic compounds containing at least two flavan/flavone units. These units are usually linked through CC or C-O-C bonds. Some examples include C2-O-C3, C2-O-C4, C3'-C3''', and C6-C8''. 3-O-beta-D-Galactopyranosylproanthocyanidin A5' is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, 3-O-beta-D-galactopyranosylproanthocyanidin a5' has been detected, but not quantified in, cocoa and cocoa products. This could make 3-O-beta-D-galactopyranosylproanthocyanidin a5' a potential biomarker for the consumption of these foods.
Structure
Data?1563863450
Synonyms
ValueSource
3-O-b-D-Galactopyranosylproanthocyanidin a5'Generator
3-O-Β-D-galactopyranosylproanthocyanidin a5'Generator
Chemical FormulaC36H34O17
Average Molecular Weight738.645
Monoisotopic Molecular Weight738.179599662
IUPAC Name5,13-bis(3,4-dihydroxyphenyl)-21-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4,12,14-trioxapentacyclo[11.7.1.0²,¹¹.0³,⁸.0¹⁵,²⁰]henicosa-2,8,10,15,17,19-hexaene-6,9,17,19-tetrol
Traditional Name5,13-bis(3,4-dihydroxyphenyl)-21-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4,12,14-trioxapentacyclo[11.7.1.0²,¹¹.0³,⁸.0¹⁵,²⁰]henicosa-2,8,10,15,17,19-hexaene-6,9,17,19-tetrol
CAS Registry NumberNot Available
SMILES
OCC1OC(OC2C3C4=C(O)C=C(O)C=C4OC2(OC2=CC(O)=C4CC(O)C(OC4=C32)C2=CC=C(O)C(O)=C2)C2=CC=C(O)C(O)=C2)C(O)C(O)C1O
InChI Identifier
InChI=1S/C36H34O17/c37-11-25-29(46)30(47)31(48)35(49-25)51-34-28-26-21(44)7-14(38)8-23(26)52-36(34,13-2-4-17(40)20(43)6-13)53-24-10-18(41)15-9-22(45)32(50-33(15)27(24)28)12-1-3-16(39)19(42)5-12/h1-8,10,22,25,28-32,34-35,37-48H,9,11H2
InChI KeyJUIIUJBWZYKSEP-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as biflavonoids and polyflavonoids. These are organic compounds containing at least two flavan/flavone units. These units are usually linked through CC or C-O-C bonds. Some examples include C2-O-C3, C2-O-C4, C3'-C3''', and C6-C8''.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassFlavonoids
Sub ClassBiflavonoids and polyflavonoids
Direct ParentBiflavonoids and polyflavonoids
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.72 g/LALOGPS
logP1.62ALOGPS
logP1.82ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)8.66ChemAxon
pKa (Strongest Basic)-3.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count17ChemAxon
Hydrogen Donor Count12ChemAxon
Polar Surface Area288.91 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity176.61 m³·mol⁻¹ChemAxon
Polarizability71.05 ųChemAxon
Number of Rings8ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+265.85131661259
DarkChem[M-H]-250.67231661259
DeepCCS[M-2H]-284.63730932474
DeepCCS[M+Na]+258.61830932474
AllCCS[M+H]+257.932859911
AllCCS[M+H-H2O]+257.232859911
AllCCS[M+NH4]+258.432859911
AllCCS[M+Na]+258.532859911
AllCCS[M-H]-258.332859911
AllCCS[M+Na-2H]-261.832859911
AllCCS[M+HCOO]-265.832859911

Predicted Kovats Retention Indices

Not Available
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (Non-derivatized) - 70eV, Positivesplash10-0kmi-7900012700-f44727241d7e13baa4032017-11-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_1_4) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_1_5) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_1_6) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_1_7) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_1_8) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_1_9) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_1_10) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_1_11) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_1_12) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_2_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_2_3) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_2_4) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_2_5) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_2_6) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_2_7) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_2_8) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_2_9) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_2_10) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_2_11) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' GC-MS (TMS_2_12) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' 10V, Positive-QTOFsplash10-05dr-0200190600-97706664d5aeea34bf2c2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' 20V, Positive-QTOFsplash10-056r-0300590100-60d6fcf00696e0cd06752016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' 40V, Positive-QTOFsplash10-0a4i-1912820100-f1a3b8bc2fd3ce81fbb62016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' 10V, Negative-QTOFsplash10-002r-1310061900-3c9fef71e9696d7e98492016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' 20V, Negative-QTOFsplash10-004i-1800191200-389652470c629f0c6f662016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' 40V, Negative-QTOFsplash10-0a6u-6961540000-20666cf2d2b17312d4392016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' 10V, Positive-QTOFsplash10-0a70-0000090500-1cb03dcde7b8e53ce4ff2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' 20V, Positive-QTOFsplash10-004r-0300138900-fa4330e94f076d7adbcb2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' 40V, Positive-QTOFsplash10-0570-8400249100-27e54ad5a9cb8268e4012021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' 10V, Negative-QTOFsplash10-000i-0000000900-22b79d63ee65107e77622021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' 20V, Negative-QTOFsplash10-000i-1200142900-87dae263d40ffcc78c302021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-O-beta-D-Galactopyranosylproanthocyanidin A5' 40V, Negative-QTOFsplash10-0a6r-2300490000-3d0778520dc02bc1979a2021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB019520
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound14841172
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .