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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-12 01:35:29 UTC

Update Date

2023-02-21 17:27:30 UTC

HMDB ID

HMDB0040045

Secondary Accession Numbers

HMDB40045

Metabolite Identification

Common Name

5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol

Description

5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol belongs to the class of organic compounds known as heteroaromatic compounds. Heteroaromatic compounds are compounds containing an aromatic ring where a carbon atom is linked to an hetero atom. Based on a literature review very few articles have been published on 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv0541 05061311352D          

 13 14  0  0  0  0            999 V2000
   -0.0953    2.2606    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1596    3.0452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4822    0.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9302   -0.4881    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4053    1.5931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2627    0.6679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5078    4.3551    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0697    0.8395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9203    2.2606    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5078    3.5301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1765   -0.1525    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2223    4.7676    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1753    3.0452    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  4  3  1  0  0  0  0
  8  3  1  0  0  0  0
  8  5  2  0  0  0  0
  8  6  1  0  0  0  0
  9  1  2  0  0  0  0
  9  5  1  0  0  0  0
 10  2  2  0  0  0  0
 10  7  1  0  0  0  0
 11  4  1  0  0  0  0
 11  6  2  0  0  0  0
 12  7  1  0  0  0  0
 13  9  1  0  0  0  0
 13 10  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0040045

> <DATABASE_NAME>
hmdb

> <SMILES>
OCC1=CC=C(O1)\C=C1\CCN=C1

> <INCHI_IDENTIFIER>
InChI=1S/C10H11NO2/c12-7-10-2-1-9(13-10)5-8-3-4-11-6-8/h1-2,5-6,12H,3-4,7H2/b8-5-

> <INCHI_KEY>
JOWOWIZUAITHGQ-YVMONPNESA-N

> <FORMULA>
C10H11NO2

> <MOLECULAR_WEIGHT>
177.1998

> <EXACT_MASS>
177.078978601

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
19.10986306931745

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
{5-[(4Z)-3,4-dihydro-2H-pyrrol-4-ylidenemethyl]furan-2-yl}methanol

> <ALOGPS_LOGP>
1.32

> <JCHEM_LOGP>
0.34872319333333335

> <ALOGPS_LOGS>
-2.75

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.775043905179203

> <JCHEM_PKA_STRONGEST_BASIC>
6.389169431678977

> <JCHEM_POLAR_SURFACE_AREA>
45.730000000000004

> <JCHEM_REFRACTIVITY>
50.7981

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.13e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
{5-[(3Z)-4,5-dihydropyrrol-3-ylidenemethyl]furan-2-yl}methanol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      -0.178   4.220   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.298   5.684   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.767   0.233   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.736  -0.911   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.623   2.974   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.490   1.247   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.948   8.130   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.997   1.567   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.718   4.220   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.948   6.590   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0      -0.329  -0.285   0.000  0.00  0.00           N+0
HETATM   12  O   UNK     0      -2.282   8.900   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      -2.194   5.684   0.000  0.00  0.00           O+0
CONECT    1    2    9                                                       
CONECT    2    1   10                                                       
CONECT    3    4    8                                                       
CONECT    4    3   11                                                       
CONECT    5    8    9                                                       
CONECT    6    8   11                                                       
CONECT    7   10   12                                                       
CONECT    8    3    5    6                                                  
CONECT    9    1    5   13                                                  
CONECT   10    2    7   13                                                  
CONECT   11    4    6                                                       
CONECT   12    7                                                            
CONECT   13    9   10                                                       
MASTER        0    0    0    0    0    0    0    0   13    0   28    0
END

View in JSmol View Stereo Labels

Synonyms

Value	Source
3-[5-(Hydroxymethyl)furfurylidene]-1-pyrroline	HMDB

Chemical Formula

C₁₀H₁₁NO₂

Average Molecular Weight

177.1998

Monoisotopic Molecular Weight

177.078978601

IUPAC Name

{5-[(4Z)-3,4-dihydro-2H-pyrrol-4-ylidenemethyl]furan-2-yl}methanol

Traditional Name

{5-[(3Z)-4,5-dihydropyrrol-3-ylidenemethyl]furan-2-yl}methanol

CAS Registry Number

Not Available

SMILES

OCC1=CC=C(O1)\C=C1\CCN=C1

InChI Identifier

InChI=1S/C10H11NO2/c12-7-10-2-1-9(13-10)5-8-3-4-11-6-8/h1-2,5-6,12H,3-4,7H2/b8-5-

InChI Key

JOWOWIZUAITHGQ-YVMONPNESA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as heteroaromatic compounds. Heteroaromatic compounds are compounds containing an aromatic ring where a carbon atom is linked to an hetero atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Heteroaromatic compounds

Sub Class

Not Available

Direct Parent

Heteroaromatic compounds

Alternative Parents

Substituents

Furan
Pyrroline
Heteroaromatic compound
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Azacycle
Oxacycle
Alcohol
Aromatic alcohol
Organic oxygen compound
Primary alcohol
Organooxygen compound
Organonitrogen compound
Organic nitrogen compound
Imine
Organopnictogen compound
Hydrocarbon derivative
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Extracellular (HMDB: HMDB0040045)
Cytoplasm (HMDB: HMDB0040045)

Source

Exogenous

Food

Food (HMDB: HMDB0040045)

Process

Not Available

Role

Biological role

Nutrient (HMDB: HMDB0040045)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.31 g/L	ALOGPS
logP	1.32	ALOGPS
logP	0.35	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	13.78	ChemAxon
pKa (Strongest Basic)	6.39	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	45.73 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	50.8 m³·mol⁻¹	ChemAxon
Polarizability	19.11 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	141.078	31661259
DarkChem	[M-H]-	140.959	31661259
DeepCCS	[M+H]+	137.815	30932474
DeepCCS	[M-H]-	135.173	30932474
DeepCCS	[M-2H]-	170.923	30932474
DeepCCS	[M+Na]+	146.461	30932474
AllCCS	[M+H]+	138.2	32859911
AllCCS	[M+H-H2O]+	133.6	32859911
AllCCS	[M+NH4]+	142.5	32859911
AllCCS	[M+Na]+	143.7	32859911
AllCCS	[M-H]-	140.5	32859911
AllCCS	[M+Na-2H]-	140.9	32859911
AllCCS	[M+HCOO]-	141.5	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol	OCC1=CC=C(O1)\C=C1\CCN=C1	2639.0	Standard polar	33892256
5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol	OCC1=CC=C(O1)\C=C1\CCN=C1	1612.5	Standard non polar	33892256
5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol	OCC1=CC=C(O1)\C=C1\CCN=C1	1788.0	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol,1TMS,isomer #1	C[Si](C)(C)OCC1=CC=C(/C=C2\C=NCC2)O1	1889.0	Semi standard non polar	33892256
5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol,1TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OCC1=CC=C(/C=C2\C=NCC2)O1	2112.4	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol GC-MS (Non-derivatized) - 70eV, Positive	splash10-016s-1900000000-666dbcd9a9666d630806	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol GC-MS (1 TMS) - 70eV, Positive	splash10-0229-8920000000-147cd736c7a79a5ebdba	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol 10V, Positive-QTOF	splash10-004i-1900000000-71522343137948277035	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol 20V, Positive-QTOF	splash10-03fs-2900000000-c92696d3bd1f4809e022	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol 40V, Positive-QTOF	splash10-0fv0-9100000000-06275e69d85494737a48	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol 10V, Negative-QTOF	splash10-004i-0900000000-035830e6a31406b10f6a	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol 20V, Negative-QTOF	splash10-056s-0900000000-9325a616a38e94ad108f	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol 40V, Negative-QTOF	splash10-0v0r-9700000000-971509bb21db1f74e868	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol 10V, Negative-QTOF	splash10-0002-0900000000-756b5565f003f9643152	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol 20V, Negative-QTOF	splash10-0pxu-1900000000-6d7a2683adbb841f0e93	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol 40V, Negative-QTOF	splash10-001i-5900000000-efa472316637150b76e9	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol 10V, Positive-QTOF	splash10-004i-0900000000-7dc7fe44084291893a1b	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol 20V, Positive-QTOF	splash10-004j-2900000000-ac3dd43cf5bb83154981	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol 40V, Positive-QTOF	splash10-016v-2900000000-c5d90dff3173c78b4d14	2021-09-22	Wishart Lab	View Spectrum

IR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted IR Spectrum	IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)	2023-02-04	FELIX lab	View Spectrum
Predicted IR Spectrum	IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)	2023-02-04	FELIX lab	View Spectrum
Predicted IR Spectrum	IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)	2023-02-04	FELIX lab	View Spectrum

Biological Properties

Cellular Locations

Cytoplasm
Extracellular

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB019732

KNApSAcK ID

Not Available

Chemspider ID

30777402

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

131752775

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

Showing metabocard for 5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol (HMDB0040045)

MOL for HMDB0040045 (5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol)

3D MOL for HMDB0040045 (5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol)

3D SDF for HMDB0040045 (5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol)

3D-SDF for HMDB0040045 (5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol)

PDB for HMDB0040045 (5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol)

3D PDB for HMDB0040045 (5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol)

SMILES for HMDB0040045 (5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol)

INCHI for HMDB0040045 (5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol)

Structure for HMDB0040045 (5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol)

3D Structure for HMDB0040045 (5-[2H-Pyrrol-4-(3H)-ylidenemethyl]-2-furanmethanol)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra

IR Spectra