Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 02:10:31 UTC
Update Date2022-03-07 02:56:40 UTC
HMDB IDHMDB0040615
Secondary Accession Numbers
  • HMDB40615
Metabolite Identification
Common Name4,5-Dihydrovomifoliol
Description4,5-Dihydrovomifoliol belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Based on a literature review a small amount of articles have been published on 4,5-Dihydrovomifoliol.
Structure
Data?1563863568
Synonyms
ValueSource
(5-chloro-2-Hydroxybenzylidene)-malononitrileHMDB
(5-chloro-2-HYDROXYBENZYLIDENE)malononitrileHMDB
2-(5-chloro-2-Hydroxybenzylidene)malononitrileHMDB
5-chloro-2-HydroxybenzylidenemalononitrileHMDB
Chemical FormulaC13H22O3
Average Molecular Weight226.312
Monoisotopic Molecular Weight226.15689457
IUPAC Name4-hydroxy-4-[(1E)-3-hydroxybut-1-en-1-yl]-3,3,5-trimethylcyclohexan-1-one
Traditional Name4-hydroxy-4-[(1E)-3-hydroxybut-1-en-1-yl]-3,3,5-trimethylcyclohexan-1-one
CAS Registry Number142173-08-8
SMILES
CC(O)\C=C\C1(O)C(C)CC(=O)CC1(C)C
InChI Identifier
InChI=1S/C13H22O3/c1-9-7-11(15)8-12(3,4)13(9,16)6-5-10(2)14/h5-6,9-10,14,16H,7-8H2,1-4H3/b6-5+
InChI KeyIHDJYDVWNNFPHR-AATRIKPKSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentSesquiterpenoids
Alternative Parents
Substituents
  • Sesquiterpenoid
  • Megastigmane sesquiterpenoid
  • Cyclofarsesane sesquiterpenoid
  • Ionone derivative
  • Cyclic alcohol
  • Tertiary alcohol
  • Ketone
  • Secondary alcohol
  • Cyclic ketone
  • Organooxygen compound
  • Alcohol
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Carbonyl group
  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility1818 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility3.06 g/LALOGPS
logP1.21ALOGPS
logP1.39ChemAxon
logS-1.9ALOGPS
pKa (Strongest Acidic)13.77ChemAxon
pKa (Strongest Basic)-2.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area57.53 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity64.18 m³·mol⁻¹ChemAxon
Polarizability25.29 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+154.75531661259
DarkChem[M-H]-152.99831661259
DeepCCS[M+H]+163.32630932474
DeepCCS[M-H]-160.96830932474
DeepCCS[M-2H]-193.85430932474
DeepCCS[M+Na]+169.41930932474
AllCCS[M+H]+153.732859911
AllCCS[M+H-H2O]+150.032859911
AllCCS[M+NH4]+157.232859911
AllCCS[M+Na]+158.232859911
AllCCS[M-H]-157.732859911
AllCCS[M+Na-2H]-158.632859911
AllCCS[M+HCOO]-159.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
4,5-DihydrovomifoliolCC(O)\C=C\C1(O)C(C)CC(=O)CC1(C)C2932.0Standard polar33892256
4,5-DihydrovomifoliolCC(O)\C=C\C1(O)C(C)CC(=O)CC1(C)C1654.1Standard non polar33892256
4,5-DihydrovomifoliolCC(O)\C=C\C1(O)C(C)CC(=O)CC1(C)C1769.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
4,5-Dihydrovomifoliol,1TMS,isomer #1CC(/C=C/C1(O)C(C)CC(=O)CC1(C)C)O[Si](C)(C)C1849.2Semi standard non polar33892256
4,5-Dihydrovomifoliol,1TMS,isomer #2CC(O)/C=C/C1(O[Si](C)(C)C)C(C)CC(=O)CC1(C)C1872.7Semi standard non polar33892256
4,5-Dihydrovomifoliol,1TMS,isomer #3CC(O)/C=C/C1(O)C(C)CC(O[Si](C)(C)C)=CC1(C)C1892.2Semi standard non polar33892256
4,5-Dihydrovomifoliol,1TMS,isomer #4CC(O)/C=C/C1(O)C(C)C=C(O[Si](C)(C)C)CC1(C)C1917.6Semi standard non polar33892256
4,5-Dihydrovomifoliol,2TMS,isomer #1CC(/C=C/C1(O[Si](C)(C)C)C(C)CC(=O)CC1(C)C)O[Si](C)(C)C1911.7Semi standard non polar33892256
4,5-Dihydrovomifoliol,2TMS,isomer #2CC(/C=C/C1(O)C(C)CC(O[Si](C)(C)C)=CC1(C)C)O[Si](C)(C)C1884.4Semi standard non polar33892256
4,5-Dihydrovomifoliol,2TMS,isomer #3CC(/C=C/C1(O)C(C)C=C(O[Si](C)(C)C)CC1(C)C)O[Si](C)(C)C1915.3Semi standard non polar33892256
4,5-Dihydrovomifoliol,2TMS,isomer #4CC(O)/C=C/C1(O[Si](C)(C)C)C(C)CC(O[Si](C)(C)C)=CC1(C)C1913.0Semi standard non polar33892256
4,5-Dihydrovomifoliol,2TMS,isomer #5CC(O)/C=C/C1(O[Si](C)(C)C)C(C)C=C(O[Si](C)(C)C)CC1(C)C1932.9Semi standard non polar33892256
4,5-Dihydrovomifoliol,3TMS,isomer #1CC(/C=C/C1(O[Si](C)(C)C)C(C)CC(O[Si](C)(C)C)=CC1(C)C)O[Si](C)(C)C1919.3Semi standard non polar33892256
4,5-Dihydrovomifoliol,3TMS,isomer #1CC(/C=C/C1(O[Si](C)(C)C)C(C)CC(O[Si](C)(C)C)=CC1(C)C)O[Si](C)(C)C1934.8Standard non polar33892256
4,5-Dihydrovomifoliol,3TMS,isomer #2CC(/C=C/C1(O[Si](C)(C)C)C(C)C=C(O[Si](C)(C)C)CC1(C)C)O[Si](C)(C)C1963.8Semi standard non polar33892256
4,5-Dihydrovomifoliol,3TMS,isomer #2CC(/C=C/C1(O[Si](C)(C)C)C(C)C=C(O[Si](C)(C)C)CC1(C)C)O[Si](C)(C)C1931.8Standard non polar33892256
4,5-Dihydrovomifoliol,1TBDMS,isomer #1CC(/C=C/C1(O)C(C)CC(=O)CC1(C)C)O[Si](C)(C)C(C)(C)C2109.3Semi standard non polar33892256
4,5-Dihydrovomifoliol,1TBDMS,isomer #2CC(O)/C=C/C1(O[Si](C)(C)C(C)(C)C)C(C)CC(=O)CC1(C)C2140.7Semi standard non polar33892256
4,5-Dihydrovomifoliol,1TBDMS,isomer #3CC(O)/C=C/C1(O)C(C)CC(O[Si](C)(C)C(C)(C)C)=CC1(C)C2136.2Semi standard non polar33892256
4,5-Dihydrovomifoliol,1TBDMS,isomer #4CC(O)/C=C/C1(O)C(C)C=C(O[Si](C)(C)C(C)(C)C)CC1(C)C2153.6Semi standard non polar33892256
4,5-Dihydrovomifoliol,2TBDMS,isomer #1CC(/C=C/C1(O[Si](C)(C)C(C)(C)C)C(C)CC(=O)CC1(C)C)O[Si](C)(C)C(C)(C)C2369.3Semi standard non polar33892256
4,5-Dihydrovomifoliol,2TBDMS,isomer #2CC(/C=C/C1(O)C(C)CC(O[Si](C)(C)C(C)(C)C)=CC1(C)C)O[Si](C)(C)C(C)(C)C2360.0Semi standard non polar33892256
4,5-Dihydrovomifoliol,2TBDMS,isomer #3CC(/C=C/C1(O)C(C)C=C(O[Si](C)(C)C(C)(C)C)CC1(C)C)O[Si](C)(C)C(C)(C)C2384.1Semi standard non polar33892256
4,5-Dihydrovomifoliol,2TBDMS,isomer #4CC(O)/C=C/C1(O[Si](C)(C)C(C)(C)C)C(C)CC(O[Si](C)(C)C(C)(C)C)=CC1(C)C2412.0Semi standard non polar33892256
4,5-Dihydrovomifoliol,2TBDMS,isomer #5CC(O)/C=C/C1(O[Si](C)(C)C(C)(C)C)C(C)C=C(O[Si](C)(C)C(C)(C)C)CC1(C)C2426.4Semi standard non polar33892256
4,5-Dihydrovomifoliol,3TBDMS,isomer #1CC(/C=C/C1(O[Si](C)(C)C(C)(C)C)C(C)CC(O[Si](C)(C)C(C)(C)C)=CC1(C)C)O[Si](C)(C)C(C)(C)C2613.0Semi standard non polar33892256
4,5-Dihydrovomifoliol,3TBDMS,isomer #1CC(/C=C/C1(O[Si](C)(C)C(C)(C)C)C(C)CC(O[Si](C)(C)C(C)(C)C)=CC1(C)C)O[Si](C)(C)C(C)(C)C2564.5Standard non polar33892256
4,5-Dihydrovomifoliol,3TBDMS,isomer #2CC(/C=C/C1(O[Si](C)(C)C(C)(C)C)C(C)C=C(O[Si](C)(C)C(C)(C)C)CC1(C)C)O[Si](C)(C)C(C)(C)C2630.5Semi standard non polar33892256
4,5-Dihydrovomifoliol,3TBDMS,isomer #2CC(/C=C/C1(O[Si](C)(C)C(C)(C)C)C(C)C=C(O[Si](C)(C)C(C)(C)C)CC1(C)C)O[Si](C)(C)C(C)(C)C2556.9Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 4,5-Dihydrovomifoliol GC-MS (Non-derivatized) - 70eV, Positivesplash10-0694-9620000000-3a0ce82491e71c30c8112017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 4,5-Dihydrovomifoliol GC-MS (2 TMS) - 70eV, Positivesplash10-0abi-9185000000-f1713daecd626afad0912017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 4,5-Dihydrovomifoliol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,5-Dihydrovomifoliol 10V, Positive-QTOFsplash10-0a4l-1590000000-3106b55539f1c501ba052017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,5-Dihydrovomifoliol 20V, Positive-QTOFsplash10-0a4l-6940000000-0f5568244a67ccbe436e2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,5-Dihydrovomifoliol 40V, Positive-QTOFsplash10-0a4i-9500000000-7b29f610c32dee73871e2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,5-Dihydrovomifoliol 10V, Negative-QTOFsplash10-004i-0190000000-36965830774bec66e7892017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,5-Dihydrovomifoliol 20V, Negative-QTOFsplash10-0a6r-2290000000-f947d8c88277fa02b88f2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,5-Dihydrovomifoliol 40V, Negative-QTOFsplash10-0a4l-9510000000-45f93a16989a0dcd0afb2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,5-Dihydrovomifoliol 10V, Negative-QTOFsplash10-004i-0490000000-7c134a760547b2e4fc332021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,5-Dihydrovomifoliol 20V, Negative-QTOFsplash10-052r-1900000000-ae1ee135ddcdd155a1052021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,5-Dihydrovomifoliol 40V, Negative-QTOFsplash10-0a4r-1910000000-b3fa6be81e8a7e07ed012021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,5-Dihydrovomifoliol 10V, Positive-QTOFsplash10-056u-1980000000-6aba3441ff89f552089e2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,5-Dihydrovomifoliol 20V, Positive-QTOFsplash10-0a4r-4910000000-47c01630fcc7f17a7b1b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,5-Dihydrovomifoliol 40V, Positive-QTOFsplash10-0597-9200000000-7b8683e427bfc4edd8c82021-09-22Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB020406
KNApSAcK IDC00054618
Chemspider ID16166638
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound23136584
PDB IDNot Available
ChEBI ID138758
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1884761
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.