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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 02:56:49 UTC
Update Date2022-03-07 02:56:57 UTC
HMDB IDHMDB0041275
Secondary Accession Numbers
  • HMDB41275
Metabolite Identification
Common Name1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone
Description1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone belongs to the class of organic compounds known as 4-prenylated xanthones. These are organic compounds containing a C5-isoprenoid group linked to a xanthone moiety at the 4-position. Xanthone is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring that carries a ketone group. 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone has been detected, but not quantified in, fruits. This could make 1-hydroxy-3,5-dimethoxy-2,4-diprenylxanthone a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone.
Structure
Data?1563863645
Synonyms
ValueSource
3,5-Di-O-methyl-8-deoxygartaninHMDB
Chemical FormulaC25H28O5
Average Molecular Weight408.4868
Monoisotopic Molecular Weight408.193674006
IUPAC Name1-hydroxy-3,5-dimethoxy-2,4-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one
Traditional Name1-hydroxy-3,5-dimethoxy-2,4-bis(3-methylbut-2-en-1-yl)xanthen-9-one
CAS Registry Number35323-84-3
SMILES
COC1=CC=CC2=C1OC1=C(C(O)=C(CC=C(C)C)C(OC)=C1CC=C(C)C)C2=O
InChI Identifier
InChI=1S/C25H28O5/c1-14(2)10-12-17-22(27)20-21(26)16-8-7-9-19(28-5)24(16)30-25(20)18(23(17)29-6)13-11-15(3)4/h7-11,27H,12-13H2,1-6H3
InChI KeyKGBJYZXDYBPQGM-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 4-prenylated xanthones. These are organic compounds containing a C5-isoprenoid group linked to a xanthone moiety at the 4-position. Xanthone is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring that carries a ketone group.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzopyrans
Sub Class1-benzopyrans
Direct Parent4-prenylated xanthones
Alternative Parents
Substituents
  • 4-prenylated xanthone
  • 2-prenylated xanthone
  • Chromone
  • Anisole
  • Alkyl aryl ether
  • Pyranone
  • Benzenoid
  • Pyran
  • Heteroaromatic compound
  • Vinylogous acid
  • Ether
  • Oxacycle
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point117 - 118 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0023 g/LALOGPS
logP4.42ALOGPS
logP6.45ChemAxon
logS-5.2ALOGPS
pKa (Strongest Acidic)9.31ChemAxon
pKa (Strongest Basic)-4.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area64.99 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity120.21 m³·mol⁻¹ChemAxon
Polarizability45.88 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+195.631661259
DarkChem[M-H]-199.031661259
DeepCCS[M+H]+195.81830932474
DeepCCS[M-H]-193.4630932474
DeepCCS[M-2H]-227.50730932474
DeepCCS[M+Na]+202.73530932474
AllCCS[M+H]+198.632859911
AllCCS[M+H-H2O]+196.032859911
AllCCS[M+NH4]+201.132859911
AllCCS[M+Na]+201.832859911
AllCCS[M-H]-199.532859911
AllCCS[M+Na-2H]-199.132859911
AllCCS[M+HCOO]-198.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthoneCOC1=CC=CC2=C1OC1=C(C(O)=C(CC=C(C)C)C(OC)=C1CC=C(C)C)C2=O4588.5Standard polar33892256
1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthoneCOC1=CC=CC2=C1OC1=C(C(O)=C(CC=C(C)C)C(OC)=C1CC=C(C)C)C2=O3395.0Standard non polar33892256
1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthoneCOC1=CC=CC2=C1OC1=C(C(O)=C(CC=C(C)C)C(OC)=C1CC=C(C)C)C2=O3299.6Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone,1TMS,isomer #1COC1=C(CC=C(C)C)C(O[Si](C)(C)C)=C2C(=O)C3=CC=CC(OC)=C3OC2=C1CC=C(C)C3245.2Semi standard non polar33892256
1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone,1TBDMS,isomer #1COC1=C(CC=C(C)C)C(O[Si](C)(C)C(C)(C)C)=C2C(=O)C3=CC=CC(OC)=C3OC2=C1CC=C(C)C3449.1Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-1009000000-b0184614ee155d3c54e02017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone GC-MS (1 TMS) - 70eV, Positivesplash10-014i-1001900000-709313d5160287c3a3b82017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone 10V, Positive-QTOFsplash10-0a4i-1007900000-77a00775a185b5048dd92017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone 20V, Positive-QTOFsplash10-0pvi-7009100000-572c4075eddc542ccb282017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone 40V, Positive-QTOFsplash10-0aor-9025000000-1eb79b9d4bf19d9b9cea2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone 10V, Negative-QTOFsplash10-0a4i-0001900000-1227b8389ce141bb712c2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone 20V, Negative-QTOFsplash10-0a4i-0009600000-6ed08bd4a16dd27e36bf2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone 40V, Negative-QTOFsplash10-03kj-0239000000-75d86d1f4187975f0a9e2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone 10V, Positive-QTOFsplash10-0a4i-0004900000-4c7a1fe197b2a93ca7ce2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone 20V, Positive-QTOFsplash10-0udi-0029100000-79aef65e2a7688e0ad732021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone 40V, Positive-QTOFsplash10-001a-0089000000-0fde9221bd7eabb546742021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone 10V, Negative-QTOFsplash10-0a4i-0000900000-4232e56e7795651b99e42021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone 20V, Negative-QTOFsplash10-0a4i-0009400000-5150ab3812a26ee02e232021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-Hydroxy-3,5-dimethoxy-2,4-diprenylxanthone 40V, Negative-QTOFsplash10-0h6r-0109100000-17e3cd1eb2719f2eaf632021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB021187
KNApSAcK IDNot Available
Chemspider ID30777547
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound14777479
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .