Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 03:07:45 UTC
Update Date2022-03-07 02:57:01 UTC
HMDB IDHMDB0041441
Secondary Accession Numbers
  • HMDB41441
Metabolite Identification
Common Name11-Methylgerberinol
Description11-Methylgerberinol belongs to the class of organic compounds known as 4-hydroxycoumarins. These are coumarins that contain one or more hydroxyl groups attached to C4-position the coumarin skeleton. 11-Methylgerberinol has been detected, but not quantified in, fruits. This could make 11-methylgerberinol a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on 11-Methylgerberinol.
Structure
Data?1563863664
Synonyms
ValueSource
3,3'-Ethylidenebis(4-hydroxy-5-methyl-2H-1-benzopyran-2-one)HMDB
Chemical FormulaC22H18O6
Average Molecular Weight378.3747
Monoisotopic Molecular Weight378.110338308
IUPAC Name4-hydroxy-3-[1-(4-hydroxy-5-methyl-2-oxo-2H-chromen-3-yl)ethyl]-5-methyl-2H-chromen-2-one
Traditional Name4-hydroxy-3-[1-(4-hydroxy-5-methyl-2-oxochromen-3-yl)ethyl]-5-methylchromen-2-one
CAS Registry Number173559-76-7
SMILES
CC(C1=C(O)C2=C(C)C=CC=C2OC1=O)C1=C(O)C2=C(C)C=CC=C2OC1=O
InChI Identifier
InChI=1S/C22H18O6/c1-10-6-4-8-13-15(10)19(23)17(21(25)27-13)12(3)18-20(24)16-11(2)7-5-9-14(16)28-22(18)26/h4-9,12,23-24H,1-3H3
InChI KeyDVOGDIBWOOVRGI-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 4-hydroxycoumarins. These are coumarins that contain one or more hydroxyl groups attached to C4-position the coumarin skeleton.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassCoumarins and derivatives
Sub ClassHydroxycoumarins
Direct Parent4-hydroxycoumarins
Alternative Parents
Substituents
  • 4-hydroxycoumarin
  • Benzopyran
  • 1-benzopyran
  • Pyranone
  • Pyran
  • Benzenoid
  • Heteroaromatic compound
  • Vinylogous acid
  • Lactone
  • Oxacycle
  • Organoheterocyclic compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point218 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.025 g/LALOGPS
logP2.73ALOGPS
logP3.26ChemAxon
logS-4.2ALOGPS
pKa (Strongest Acidic)-11ChemAxon
pKa (Strongest Basic)-2.7ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area93.06 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity103.82 m³·mol⁻¹ChemAxon
Polarizability38.56 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+186.54131661259
DarkChem[M-H]-185.11931661259
DeepCCS[M+H]+192.64930932474
DeepCCS[M-H]-190.29130932474
DeepCCS[M-2H]-224.1130932474
DeepCCS[M+Na]+199.33830932474
AllCCS[M+H]+189.932859911
AllCCS[M+H-H2O]+186.732859911
AllCCS[M+NH4]+192.832859911
AllCCS[M+Na]+193.632859911
AllCCS[M-H]-189.632859911
AllCCS[M+Na-2H]-188.932859911
AllCCS[M+HCOO]-188.332859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
11-MethylgerberinolCC(C1=C(O)C2=C(C)C=CC=C2OC1=O)C1=C(O)C2=C(C)C=CC=C2OC1=O4268.5Standard polar33892256
11-MethylgerberinolCC(C1=C(O)C2=C(C)C=CC=C2OC1=O)C1=C(O)C2=C(C)C=CC=C2OC1=O1810.9Standard non polar33892256
11-MethylgerberinolCC(C1=C(O)C2=C(C)C=CC=C2OC1=O)C1=C(O)C2=C(C)C=CC=C2OC1=O3398.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
11-Methylgerberinol,1TMS,isomer #1CC1=CC=CC2=C1C(O)=C(C(C)C1=C(O[Si](C)(C)C)C3=C(C)C=CC=C3OC1=O)C(=O)O23437.3Semi standard non polar33892256
11-Methylgerberinol,2TMS,isomer #1CC1=CC=CC2=C1C(O[Si](C)(C)C)=C(C(C)C1=C(O[Si](C)(C)C)C3=C(C)C=CC=C3OC1=O)C(=O)O23377.0Semi standard non polar33892256
11-Methylgerberinol,1TBDMS,isomer #1CC1=CC=CC2=C1C(O)=C(C(C)C1=C(O[Si](C)(C)C(C)(C)C)C3=C(C)C=CC=C3OC1=O)C(=O)O23660.7Semi standard non polar33892256
11-Methylgerberinol,2TBDMS,isomer #1CC1=CC=CC2=C1C(O[Si](C)(C)C(C)(C)C)=C(C(C)C1=C(O[Si](C)(C)C(C)(C)C)C3=C(C)C=CC=C3OC1=O)C(=O)O23843.1Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 11-Methylgerberinol GC-MS (Non-derivatized) - 70eV, Positivesplash10-0ik9-0219000000-b18910a095d27ef71bd22017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 11-Methylgerberinol GC-MS (2 TMS) - 70eV, Positivesplash10-0a4i-3530890000-eeccf8a8822a84a229c92017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 11-Methylgerberinol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 11-Methylgerberinol 10V, Positive-QTOFsplash10-004i-0009000000-ab866a79ac6c4dcce4432017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 11-Methylgerberinol 20V, Positive-QTOFsplash10-004i-0029000000-bcf09a211144b2e983532017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 11-Methylgerberinol 40V, Positive-QTOFsplash10-014r-3912000000-b7d5e1d1f5d9e630c8f62017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 11-Methylgerberinol 10V, Negative-QTOFsplash10-004i-0009000000-b831538be17e40f9af852017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 11-Methylgerberinol 20V, Negative-QTOFsplash10-004i-0409000000-cd4ffb3bb34052c92da52017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 11-Methylgerberinol 40V, Negative-QTOFsplash10-0a4i-1913000000-95d9fec258c4a49df3172017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 11-Methylgerberinol 10V, Negative-QTOFsplash10-004i-0009000000-d2a2ec1e041cd507613b2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 11-Methylgerberinol 20V, Negative-QTOFsplash10-004i-0916000000-ce6a95cf2532eb1fbc612021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 11-Methylgerberinol 40V, Negative-QTOFsplash10-052f-2930000000-f4d72761a9707c3f790a2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 11-Methylgerberinol 10V, Positive-QTOFsplash10-004i-0029000000-e8af0cb8cf3a2fb4762b2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 11-Methylgerberinol 20V, Positive-QTOFsplash10-004i-0109000000-610bc18409e61a00d7682021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 11-Methylgerberinol 40V, Positive-QTOFsplash10-0apl-3901000000-2a29f5afe0f1afbfb3082021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB021392
KNApSAcK IDNot Available
Chemspider ID30777568
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound101690823
PDB IDNot Available
ChEBI ID172609
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .