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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-10-30 10:32:48 UTC
Update Date2022-03-07 03:17:34 UTC
HMDB IDHMDB0059641
Secondary Accession Numbers
  • HMDB59641
Metabolite Identification
Common Name4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol
Description4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol, also known as guanosine 5'-diphosphate,3'-diphosphate or guanosine 3'-diphosphate 5'-diphosphate, belongs to the class of organic compounds known as cholesterols and derivatives. Cholesterols and derivatives are compounds containing a 3-hydroxylated cholestane core. Based on a literature review a significant number of articles have been published on 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol.
Structure
Data?1563865959
Synonyms
ValueSource
4,4-Dimethyl-5-a-cholest-7-en-3-b-olGenerator
4,4-Dimethyl-5-α-cholest-7-en-3-β-olGenerator
Guanosine 3'-diphosphate 5'-diphosphateHMDB
Guanosine 5'-diphosphate,3'-diphosphateHMDB
GUANOSINE-5',3'-tetraphosphATEHMDB
Guanosine 3'-diphosphoric acid 5'-diphosphoric acidHMDB
Guanosine 5'-diphosphoric acid,3'-diphosphoric acidHMDB
GUANOSINE-5',3'-tetraphosphoric acidHMDB
Guanosine 3',5'-bis(diphosphoric acid)HMDB
3'-Diphosphate 5'-diphosphate, guanosineHMDB
5'-Diphosphate 3'-diphosphate, guanosineHMDB
Guanosine tetraphosphateHMDB
Guanosine 5'-diphosphate 3'-diphosphateHMDB
Tetraphosphate, guanosineHMDB
3'-Diphosphate, guanosine 5'-diphosphateHMDB
5'-Diphosphate, guanosine 3'-diphosphateHMDB
Guanosine 3' diphosphate 5' diphosphateHMDB
Guanosine 5' diphosphate 3' diphosphateHMDB
4,4-Dimethyl-5 alpha-cholest-7-ene-3 beta-olHMDB
4,4-Dimethylcholest-7-ene-3-olHMDB
Chemical FormulaC29H50O
Average Molecular Weight414.7067
Monoisotopic Molecular Weight414.386166222
IUPAC Name(1R,2R,11R,14R,15R)-2,6,6,15-tetramethyl-14-[(2R)-6-methylheptan-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-9-en-5-ol
Traditional Name(1R,2R,11R,14R,15R)-2,6,6,15-tetramethyl-14-[(2R)-6-methylheptan-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-9-en-5-ol
CAS Registry NumberNot Available
SMILES
[H][C@@]12CC[C@H]([C@H](C)CCCC(C)C)[C@@]1(C)CC[C@@]1([H])C2=CCC2C(C)(C)C(O)CC[C@]12C
InChI Identifier
InChI=1S/C29H50O/c1-19(2)9-8-10-20(3)22-12-13-23-21-11-14-25-27(4,5)26(30)16-18-29(25,7)24(21)15-17-28(22,23)6/h11,19-20,22-26,30H,8-10,12-18H2,1-7H3/t20-,22-,23+,24+,25?,26?,28-,29-/m1/s1
InChI KeyUVNXFLZMQCAWCP-JBBIFICKSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cholesterols and derivatives. Cholesterols and derivatives are compounds containing a 3-hydroxylated cholestane core.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassCholestane steroids
Direct ParentCholesterols and derivatives
Alternative Parents
Substituents
  • Cholesterol-skeleton
  • Cholesterol
  • Diterpenoid
  • Hydroxysteroid
  • 3-hydroxysteroid
  • 3-hydroxy-delta-7-steroid
  • Delta-7-steroid
  • Cyclic alcohol
  • Secondary alcohol
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Alcohol
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility2.9e-05 g/LALOGPS
logP7.61ALOGPS
logP7.86ChemAxon
logS-7.2ALOGPS
pKa (Strongest Acidic)19.55ChemAxon
pKa (Strongest Basic)-0.81ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity129.49 m³·mol⁻¹ChemAxon
Polarizability54.39 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+202.37931661259
DarkChem[M-H]-198.70431661259
DeepCCS[M-2H]-244.29730932474
DeepCCS[M+Na]+220.79930932474
AllCCS[M+H]+210.432859911
AllCCS[M+H-H2O]+208.532859911
AllCCS[M+NH4]+212.232859911
AllCCS[M+Na]+212.732859911
AllCCS[M-H]-207.732859911
AllCCS[M+Na-2H]-209.932859911
AllCCS[M+HCOO]-212.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol[H][C@@]12CC[C@H]([C@H](C)CCCC(C)C)[C@@]1(C)CC[C@@]1([H])C2=CCC2C(C)(C)C(O)CC[C@]12C2918.1Standard polar33892256
4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol[H][C@@]12CC[C@H]([C@H](C)CCCC(C)C)[C@@]1(C)CC[C@@]1([H])C2=CCC2C(C)(C)C(O)CC[C@]12C3303.0Standard non polar33892256
4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol[H][C@@]12CC[C@H]([C@H](C)CCCC(C)C)[C@@]1(C)CC[C@@]1([H])C2=CCC2C(C)(C)C(O)CC[C@]12C3326.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol,1TMS,isomer #1CC(C)CCC[C@@H](C)[C@H]1CC[C@H]2C3=CCC4C(C)(C)C(O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@@]21C3366.0Semi standard non polar33892256
4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol,1TBDMS,isomer #1CC(C)CCC[C@@H](C)[C@H]1CC[C@H]2C3=CCC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@@]21C3573.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol GC-MS (Non-derivatized) - 70eV, Positivesplash10-0f7a-1019000000-12884539fa82b58d98372017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol GC-MS (1 TMS) - 70eV, Positivesplash10-00di-3002900000-6f05d80468183b26f52b2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol 10V, Positive-QTOFsplash10-00kb-0009500000-d30d1b28d2370b56e7a02017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol 20V, Positive-QTOFsplash10-05mt-4029100000-80af62bae803c24197062017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol 40V, Positive-QTOFsplash10-0a70-4229000000-a048821254d33e07e2722017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol 10V, Negative-QTOFsplash10-03di-0001900000-158617c2e43f1a46b58a2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol 20V, Negative-QTOFsplash10-03di-0004900000-fdb687d0f9f704a355552017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol 40V, Negative-QTOFsplash10-000t-1009000000-cf9559f7a47b6e8921192017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol 10V, Positive-QTOFsplash10-014i-0004900000-cca2399619fc6c5a1b982021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol 20V, Positive-QTOFsplash10-05uu-8924200000-45c45d4f92defacfa0b32021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol 40V, Positive-QTOFsplash10-052r-9854000000-9efb32cf1e9d64f842ed2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol 10V, Negative-QTOFsplash10-03di-0000900000-eda302082c5114b2ab3a2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol 20V, Negative-QTOFsplash10-03di-0000900000-eda302082c5114b2ab3a2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol 40V, Negative-QTOFsplash10-03di-0003900000-6f4beffea8d03e4d799c2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane (predicted from logP)
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID20037794
KEGG Compound IDC01228
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound439450
PDB IDNot Available
ChEBI ID17633
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Dietschy JM, Turley SD: Thematic review series: brain Lipids. Cholesterol metabolism in the central nervous system during early development and in the mature animal. J Lipid Res. 2004 Aug;45(8):1375-97. [PubMed:15254070 ]
  6. O'Byrne SM, Blaner WS: Retinol and retinyl esters: biochemistry and physiology. J Lipid Res. 2013 Jul;54(7):1731-43. doi: 10.1194/jlr.R037648. Epub 2013 Apr 26. [PubMed:23625372 ]
  7. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.
  8. Linda T. Welson (2006). Triglycerides and Cholesterol Research. Nova Science Publishers Inc..

Enzymes

General function:
Involved in iron ion binding
Specific function:
Not Available
Gene Name:
MSMO1
Uniprot ID:
Q15800
Molecular weight:
19470.325
Reactions
4,4-Dimethyl-5-alpha-cholest-7-en-3-beta-ol + NAD(P)H + Oxygen → 4-beta-Hydroxymethyl-4-alpha-methyl-5-alpha-cholest-7-en-3-beta-ol + NAD(P)(+) + Waterdetails