Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2013-03-04 20:35:28 UTC
Update Date2021-09-14 15:39:01 UTC
HMDB IDHMDB0059806
Secondary Accession Numbers
  • HMDB59806
Metabolite Identification
Common NamePhenylglucuronide
DescriptionPhenylglucuronide belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose. Phenylglucuronide is an extremely weak basic (essentially neutral) compound (based on its pKa). These are compounds comprising the glucuronic acid linked to another substance via a glycosidic bond.
Structure
Data?1563865977
Synonyms
ValueSource
(2S,3S,4S,5R)-3,4,5-Trihydroxy-6-phenoxyoxane-2-carboxylateGenerator
PhenylglucuronideMeSH
Chemical FormulaC12H14O7
Average Molecular Weight270.2354
Monoisotopic Molecular Weight270.073952802
IUPAC Name(2S,3S,4S,5R)-3,4,5-trihydroxy-6-phenoxyoxane-2-carboxylic acid
Traditional Name(2S,3S,4S,5R)-3,4,5-trihydroxy-6-phenoxyoxane-2-carboxylic acid
CAS Registry NumberNot Available
SMILES
O[C@@H]1[C@@H](O)C(OC2=CC=CC=C2)O[C@@H]([C@H]1O)C(O)=O
InChI Identifier
InChI=1S/C12H14O7/c13-7-8(14)10(11(16)17)19-12(9(7)15)18-6-4-2-1-3-5-6/h1-5,7-10,12-15H,(H,16,17)/t7-,8-,9+,10-,12?/m0/s1
InChI KeyWVHAUDNUGBNUDZ-SDQGTYQYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentPhenolic glycosides
Alternative Parents
Substituents
  • Phenolic glycoside
  • 1-o-glucuronide
  • O-glucuronide
  • Glucuronic acid or derivatives
  • O-glycosyl compound
  • Phenoxy compound
  • Phenol ether
  • Beta-hydroxy acid
  • Monocyclic benzene moiety
  • Hydroxy acid
  • Benzenoid
  • Monosaccharide
  • Pyran
  • Oxane
  • Secondary alcohol
  • Acetal
  • Monocarboxylic acid or derivatives
  • Organoheterocyclic compound
  • Oxacycle
  • Carboxylic acid
  • Carboxylic acid derivative
  • Polyol
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Alcohol
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility32 g/LALOGPS
logP-0.78ALOGPS
logP-0.28ChemAxon
logS-0.93ALOGPS
pKa (Strongest Acidic)3.36ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area116.45 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity60.05 m³·mol⁻¹ChemAxon
Polarizability25.18 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+164.45431661259
DarkChem[M-H]-159.16631661259
DeepCCS[M+H]+160.7230932474
DeepCCS[M-H]-158.36230932474
DeepCCS[M-2H]-192.67930932474
DeepCCS[M+Na]+168.50130932474
AllCCS[M+H]+162.932859911
AllCCS[M+H-H2O]+159.332859911
AllCCS[M+NH4]+166.332859911
AllCCS[M+Na]+167.332859911
AllCCS[M-H]-158.432859911
AllCCS[M+Na-2H]-158.332859911
AllCCS[M+HCOO]-158.332859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PhenylglucuronideO[C@@H]1[C@@H](O)C(OC2=CC=CC=C2)O[C@@H]([C@H]1O)C(O)=O3906.0Standard polar33892256
PhenylglucuronideO[C@@H]1[C@@H](O)C(OC2=CC=CC=C2)O[C@@H]([C@H]1O)C(O)=O2420.3Standard non polar33892256
PhenylglucuronideO[C@@H]1[C@@H](O)C(OC2=CC=CC=C2)O[C@@H]([C@H]1O)C(O)=O2368.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Phenylglucuronide,1TMS,isomer #1C[Si](C)(C)O[C@@H]1[C@@H](O)C(OC2=CC=CC=C2)O[C@H](C(=O)O)[C@H]1O2247.8Semi standard non polar33892256
Phenylglucuronide,1TMS,isomer #2C[Si](C)(C)O[C@H]1C(OC2=CC=CC=C2)O[C@H](C(=O)O)[C@@H](O)[C@@H]1O2255.1Semi standard non polar33892256
Phenylglucuronide,1TMS,isomer #3C[Si](C)(C)O[C@@H]1[C@@H](C(=O)O)OC(OC2=CC=CC=C2)[C@H](O)[C@H]1O2238.8Semi standard non polar33892256
Phenylglucuronide,1TMS,isomer #4C[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O)[C@@H](O)[C@@H]1O2227.4Semi standard non polar33892256
Phenylglucuronide,2TMS,isomer #1C[Si](C)(C)O[C@@H]1[C@@H](O[Si](C)(C)C)C(OC2=CC=CC=C2)O[C@H](C(=O)O)[C@H]1O2282.1Semi standard non polar33892256
Phenylglucuronide,2TMS,isomer #2C[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O)[C@@H](O[Si](C)(C)C)[C@@H]1O2246.4Semi standard non polar33892256
Phenylglucuronide,2TMS,isomer #3C[Si](C)(C)O[C@@H]1[C@@H](C(=O)O)OC(OC2=CC=CC=C2)[C@H](O)[C@H]1O[Si](C)(C)C2258.2Semi standard non polar33892256
Phenylglucuronide,2TMS,isomer #4C[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O[Si](C)(C)C)[C@@H](O)[C@@H]1O2249.9Semi standard non polar33892256
Phenylglucuronide,2TMS,isomer #5C[Si](C)(C)O[C@@H]1[C@@H](C(=O)O)OC(OC2=CC=CC=C2)[C@H](O[Si](C)(C)C)[C@H]1O2263.6Semi standard non polar33892256
Phenylglucuronide,2TMS,isomer #6C[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O)[C@@H](O)[C@@H]1O[Si](C)(C)C2239.9Semi standard non polar33892256
Phenylglucuronide,3TMS,isomer #1C[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@@H]1O2295.6Semi standard non polar33892256
Phenylglucuronide,3TMS,isomer #2C[Si](C)(C)O[C@@H]1[C@@H](O[Si](C)(C)C)C(OC2=CC=CC=C2)O[C@H](C(=O)O)[C@H]1O[Si](C)(C)C2307.1Semi standard non polar33892256
Phenylglucuronide,3TMS,isomer #3C[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O)[C@@H](O[Si](C)(C)C)[C@@H]1O[Si](C)(C)C2285.0Semi standard non polar33892256
Phenylglucuronide,3TMS,isomer #4C[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O[Si](C)(C)C)[C@@H](O)[C@@H]1O[Si](C)(C)C2306.2Semi standard non polar33892256
Phenylglucuronide,4TMS,isomer #1C[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@@H]1O[Si](C)(C)C2378.4Semi standard non polar33892256
Phenylglucuronide,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](O)C(OC2=CC=CC=C2)O[C@H](C(=O)O)[C@H]1O2517.6Semi standard non polar33892256
Phenylglucuronide,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)O[C@H]1C(OC2=CC=CC=C2)O[C@H](C(=O)O)[C@@H](O)[C@@H]1O2529.3Semi standard non polar33892256
Phenylglucuronide,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](C(=O)O)OC(OC2=CC=CC=C2)[C@H](O)[C@H]1O2499.0Semi standard non polar33892256
Phenylglucuronide,1TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O)[C@@H](O)[C@@H]1O2515.4Semi standard non polar33892256
Phenylglucuronide,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](O[Si](C)(C)C(C)(C)C)C(OC2=CC=CC=C2)O[C@H](C(=O)O)[C@H]1O2786.1Semi standard non polar33892256
Phenylglucuronide,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O)[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H]1O2778.1Semi standard non polar33892256
Phenylglucuronide,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](C(=O)O)OC(OC2=CC=CC=C2)[C@H](O)[C@H]1O[Si](C)(C)C(C)(C)C2755.0Semi standard non polar33892256
Phenylglucuronide,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](O)[C@@H]1O2791.5Semi standard non polar33892256
Phenylglucuronide,2TBDMS,isomer #5CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](C(=O)O)OC(OC2=CC=CC=C2)[C@H](O[Si](C)(C)C(C)(C)C)[C@H]1O2776.8Semi standard non polar33892256
Phenylglucuronide,2TBDMS,isomer #6CC(C)(C)[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O)[C@@H](O)[C@@H]1O[Si](C)(C)C(C)(C)C2774.6Semi standard non polar33892256
Phenylglucuronide,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H]1O2991.7Semi standard non polar33892256
Phenylglucuronide,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](O[Si](C)(C)C(C)(C)C)C(OC2=CC=CC=C2)O[C@H](C(=O)O)[C@H]1O[Si](C)(C)C(C)(C)C2986.3Semi standard non polar33892256
Phenylglucuronide,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O)[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H]1O[Si](C)(C)C(C)(C)C2973.8Semi standard non polar33892256
Phenylglucuronide,3TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](O)[C@@H]1O[Si](C)(C)C(C)(C)C3011.0Semi standard non polar33892256
Phenylglucuronide,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)[C@H]1OC(OC2=CC=CC=C2)[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H]1O[Si](C)(C)C(C)(C)C3229.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Phenylglucuronide GC-MS (Non-derivatized) - 70eV, Positivesplash10-0a4r-9420000000-0fefaf020bae70afa9382017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Phenylglucuronide GC-MS (4 TMS) - 70eV, Positivesplash10-0006-5022690000-2ca6b40cbaa0f2cf24a82017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Phenylglucuronide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Phenylglucuronide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phenylglucuronide 10V, Positive-QTOFsplash10-0f6t-7090000000-1947064dd09d031aa0cf2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phenylglucuronide 20V, Positive-QTOFsplash10-0002-9010000000-509d0f871e9bdeaa35702017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phenylglucuronide 40V, Positive-QTOFsplash10-00kb-9100000000-6e4530db426f7ca01b552017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phenylglucuronide 10V, Negative-QTOFsplash10-014l-5190000000-d492f35eff05b37d2cbe2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phenylglucuronide 20V, Negative-QTOFsplash10-0006-9020000000-921c0de6987f150907312017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phenylglucuronide 40V, Negative-QTOFsplash10-0006-9000000000-b2eb132ca189b338b9e72017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phenylglucuronide 10V, Negative-QTOFsplash10-0006-8490000000-18f934178602ded15e502021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phenylglucuronide 20V, Negative-QTOFsplash10-0006-9100000000-952deb82031b04f4710e2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phenylglucuronide 40V, Negative-QTOFsplash10-0006-9000000000-5451e316623db6bb46882021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phenylglucuronide 10V, Positive-QTOFsplash10-00di-4790000000-1866b9faf3962a3df6f62021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phenylglucuronide 20V, Positive-QTOFsplash10-0ukj-4970000000-6e0e130559b1d574333d2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Phenylglucuronide 40V, Positive-QTOFsplash10-004i-9200000000-6741b083b52d9d86ff612021-09-24Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
  • Urine
Tissue Locations
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Both
Colectomy patients.
details
BloodDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Both
Hemodialysis patients.
details
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound119239
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available