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Showing metabocard for (E)-6-Nonenol (HMDB0059887)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-03-07 21:35:02 UTC
Update Date2023-02-21 17:29:33 UTC
HMDB IDHMDB0059887
Secondary Accession Numbers
  • HMDB59887
Metabolite Identification
Common Name(E)-6-Nonenol
Description(E)-6-Nonenol belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms. Thus, (e)-6-nonenol is considered to be a fatty alcohol lipid molecule (E)-6-Nonenol is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.
Structure
Thumb
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0059887 ((E)-6-Nonenol)

  Mrv0541 03071314352D          

 12 11  0  0  0  0            999 V2000
    1.0461    3.9039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0461    3.0789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    3.0789    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0461    1.4289    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  2  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
 11  3  1  0  0  0  0
 12  4  1  0  0  0  0
M  END
Download

3D MOL for HMDB0059887 ((E)-6-Nonenol)

HMDB0059887
     RDKit          3D
(E)-6-Nonenol
 28 27  0  0  0  0  0  0  0  0999 V2000
    4.3577    0.5755   -0.9218 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3663    0.8346    0.1818 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0211    0.3180   -0.2050 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3841   -0.6085    0.4868 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0553   -1.0605    0.0299 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9437   -0.7736    1.1304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3378   -1.1955    0.7717 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8587   -0.4985   -0.4560 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8876    0.9800   -0.2555 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3707    1.6414   -1.3872 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3398    0.9274   -0.5808 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0144    1.1074   -1.8204 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4169   -0.5285   -1.1064 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2959    1.9511    0.2979 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6874    0.3945    1.1336 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5495    0.7222   -1.0919 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8199   -1.0356    1.3751 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1038   -2.1572   -0.1743 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2043   -0.5279   -0.9041 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6185   -1.2963    2.0521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9202    0.3027    1.3557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4016   -2.3037    0.6729 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0066   -0.9099    1.6116 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9201   -0.8345   -0.5833 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3139   -0.7787   -1.3796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9029    1.4242   -0.0273 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5360    1.1884    0.6310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1895    2.1415   -1.1202 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  1 11  1  0
  1 12  1  0
  1 13  1  0
  2 14  1  0
  2 15  1  0
  3 16  1  0
  4 17  1  0
  5 18  1  0
  5 19  1  0
  6 20  1  0
  6 21  1  0
  7 22  1  0
  7 23  1  0
  8 24  1  0
  8 25  1  0
  9 26  1  0
  9 27  1  0
 10 28  1  0
M  END
Download

3D SDF for HMDB0059887 ((E)-6-Nonenol)

  Mrv0541 03071314352D          

 12 11  0  0  0  0            999 V2000
    1.0461    3.9039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0461    3.0789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    3.0789    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0461    1.4289    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  2  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
 11  3  1  0  0  0  0
 12  4  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0059887

> <DATABASE_NAME>
hmdb

> <SMILES>
[H]\C(CC)=C(\[H])CCCCCO

> <INCHI_IDENTIFIER>
InChI=1S/C9H18O/c1-2-3-4-5-6-7-8-9-10/h3-4,10H,2,5-9H2,1H3/b4-3+

> <INCHI_KEY>
XJHRZBIBSSVCEL-ONEGZZNKSA-N

> <FORMULA>
C9H18O

> <MOLECULAR_WEIGHT>
142.2386

> <EXACT_MASS>
142.135765198

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_AVERAGE_POLARIZABILITY>
18.634021700774813

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(6E)-non-6-en-1-ol

> <ALOGPS_LOGP>
3.41

> <JCHEM_LOGP>
2.6662436143333337

> <ALOGPS_LOGS>
-2.46

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.843936486031904

> <JCHEM_PKA_STRONGEST_BASIC>
-1.9922621810096448

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
46.2565

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.96e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(6E)-non-6-en-1-ol

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for HMDB0059887 ((E)-6-Nonenol)

HMDB0059887
     RDKit          3D
(E)-6-Nonenol
 28 27  0  0  0  0  0  0  0  0999 V2000
    4.3577    0.5755   -0.9218 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3663    0.8346    0.1818 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0211    0.3180   -0.2050 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3841   -0.6085    0.4868 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0553   -1.0605    0.0299 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9437   -0.7736    1.1304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3378   -1.1955    0.7717 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8587   -0.4985   -0.4560 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8876    0.9800   -0.2555 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3707    1.6414   -1.3872 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3398    0.9274   -0.5808 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0144    1.1074   -1.8204 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4169   -0.5285   -1.1064 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2959    1.9511    0.2979 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6874    0.3945    1.1336 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5495    0.7222   -1.0919 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8199   -1.0356    1.3751 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1038   -2.1572   -0.1743 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2043   -0.5279   -0.9041 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6185   -1.2963    2.0521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9202    0.3027    1.3557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4016   -2.3037    0.6729 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0066   -0.9099    1.6116 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9201   -0.8345   -0.5833 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3139   -0.7787   -1.3796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9029    1.4242   -0.0273 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5360    1.1884    0.6310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1895    2.1415   -1.1202 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  1 11  1  0
  1 12  1  0
  1 13  1  0
  2 14  1  0
  2 15  1  0
  3 16  1  0
  4 17  1  0
  5 18  1  0
  5 19  1  0
  6 20  1  0
  6 21  1  0
  7 22  1  0
  7 23  1  0
  8 24  1  0
  8 25  1  0
  9 26  1  0
  9 27  1  0
 10 28  1  0
M  END
Download

PDB for HMDB0059887 ((E)-6-Nonenol)

HEADER    PROTEIN                                 07-MAR-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-MAR-13         0                                  
HETATM    1  C   UNK     0       1.953   7.287   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.953   5.747   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.286   4.977   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.286   3.437   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.287   2.667   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.621   3.437   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.955   2.667   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      11.288   3.437   0.000  0.00  0.00           O+0
HETATM   11  H   UNK     0       4.620   5.747   0.000  0.00  0.00           H+0
HETATM   12  H   UNK     0       1.953   2.667   0.000  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   11                                                  
CONECT    4    3    5   12                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    3                                                            
CONECT   12    4                                                            
MASTER        0    0    0    0    0    0    0    0   12    0   22    0
END
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3D PDB for HMDB0059887 ((E)-6-Nonenol)

COMPND    HMDB0059887
HETATM    1  C1  UNL     1       4.358   0.575  -0.922  1.00  0.00           C  
HETATM    2  C2  UNL     1       3.366   0.835   0.182  1.00  0.00           C  
HETATM    3  C3  UNL     1       2.021   0.318  -0.205  1.00  0.00           C  
HETATM    4  C4  UNL     1       1.384  -0.608   0.487  1.00  0.00           C  
HETATM    5  C5  UNL     1       0.055  -1.061   0.030  1.00  0.00           C  
HETATM    6  C6  UNL     1      -0.944  -0.774   1.130  1.00  0.00           C  
HETATM    7  C7  UNL     1      -2.338  -1.195   0.772  1.00  0.00           C  
HETATM    8  C8  UNL     1      -2.859  -0.498  -0.456  1.00  0.00           C  
HETATM    9  C9  UNL     1      -2.888   0.980  -0.255  1.00  0.00           C  
HETATM   10  O1  UNL     1      -3.371   1.641  -1.387  1.00  0.00           O  
HETATM   11  H1  UNL     1       5.340   0.927  -0.581  1.00  0.00           H  
HETATM   12  H2  UNL     1       4.014   1.107  -1.820  1.00  0.00           H  
HETATM   13  H3  UNL     1       4.417  -0.529  -1.106  1.00  0.00           H  
HETATM   14  H4  UNL     1       3.296   1.951   0.298  1.00  0.00           H  
HETATM   15  H5  UNL     1       3.687   0.395   1.134  1.00  0.00           H  
HETATM   16  H6  UNL     1       1.549   0.722  -1.092  1.00  0.00           H  
HETATM   17  H7  UNL     1       1.820  -1.036   1.375  1.00  0.00           H  
HETATM   18  H8  UNL     1       0.104  -2.157  -0.174  1.00  0.00           H  
HETATM   19  H9  UNL     1      -0.204  -0.528  -0.904  1.00  0.00           H  
HETATM   20  H10 UNL     1      -0.618  -1.296   2.052  1.00  0.00           H  
HETATM   21  H11 UNL     1      -0.920   0.303   1.356  1.00  0.00           H  
HETATM   22  H12 UNL     1      -2.402  -2.304   0.673  1.00  0.00           H  
HETATM   23  H13 UNL     1      -3.007  -0.910   1.612  1.00  0.00           H  
HETATM   24  H14 UNL     1      -3.920  -0.834  -0.583  1.00  0.00           H  
HETATM   25  H15 UNL     1      -2.314  -0.779  -1.380  1.00  0.00           H  
HETATM   26  H16 UNL     1      -1.903   1.424  -0.027  1.00  0.00           H  
HETATM   27  H17 UNL     1      -3.536   1.188   0.631  1.00  0.00           H  
HETATM   28  H18 UNL     1      -4.189   2.142  -1.120  1.00  0.00           H  
CONECT    1    2   11   12   13
CONECT    2    3   14   15
CONECT    3    4    4   16
CONECT    4    5   17
CONECT    5    6   18   19
CONECT    6    7   20   21
CONECT    7    8   22   23
CONECT    8    9   24   25
CONECT    9   10   26   27
CONECT   10   28
END
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SMILES for HMDB0059887 ((E)-6-Nonenol)

[H]\C(CC)=C(\[H])CCCCCO
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INCHI for HMDB0059887 ((E)-6-Nonenol)

InChI=1S/C9H18O/c1-2-3-4-5-6-7-8-9-10/h3-4,10H,2,5-9H2,1H3/b4-3+
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View in JSmolView Stereo Labels
SynonymsNot Available
Chemical FormulaC9H18O
Average Molecular Weight142.2386
Monoisotopic Molecular Weight142.135765198
IUPAC Name(6E)-non-6-en-1-ol
Traditional Name(6E)-non-6-en-1-ol
CAS Registry NumberNot Available
SMILES
[H]\C(CC)=C(\[H])CCCCCO
InChI Identifier
InChI=1S/C9H18O/c1-2-3-4-5-6-7-8-9-10/h3-4,10H,2,5-9H2,1H3/b4-3+
InChI KeyXJHRZBIBSSVCEL-ONEGZZNKSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty alcohols
Direct ParentFatty alcohols
Alternative Parents
Substituents
  • Fatty alcohol
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Alcohol
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular Locations
  • Membrane (predicted from logP)
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5362811
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.