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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-07-22 19:50:24 UTC
Update Date2021-09-14 15:42:50 UTC
HMDB IDHMDB0061139
Secondary Accession Numbers
  • HMDB61139
Metabolite Identification
Common NameDoxepin N-oxide glucuronide
DescriptionDoxepin N-oxide glucuronide is a metabolite of doxepin. Doxepin is a psychotropic agent with tricyclic antidepressant and anxiolytic properties, known under many brand-names such as Aponal, the original preparation by Boehringer-Mannheim, now part of the Roche group; Adapine, Doxal, Deptran, Sinquan and Sinequan. As doxepin hydrochloride, it is the active ingredient in cream-based preparations (Zonalon and Xepin) for the treatment of dermatological itch. (Wikipedia)
Structure
Data?1563866150
SynonymsNot Available
Chemical FormulaC25H30NO8
Average Molecular Weight472.5076
Monoisotopic Molecular Weight472.197141941
IUPAC Name{[(2S,3R,4S,5S,6S)-6-carboxy-3,4,5-trihydroxyoxan-2-yl]oxy}dimethyl{3-[(2E)-9-oxatricyclo[9.4.0.0³,⁸]pentadeca-1(11),3(8),4,6,12,14-hexaen-2-ylidene]propyl}azanium
Traditional Name{[(2S,3R,4S,5S,6S)-6-carboxy-3,4,5-trihydroxyoxan-2-yl]oxy}dimethyl{3-[(2E)-9-oxatricyclo[9.4.0.0³,⁸]pentadeca-1(11),3(8),4,6,12,14-hexaen-2-ylidene]propyl}azanium
CAS Registry NumberNot Available
SMILES
C[N+](C)(CC\C=C1/C2=C(COC3=C1C=CC=C3)C=CC=C2)O[C@@H]1O[C@@H]([C@@H](O)[C@H](O)[C@H]1O)C(O)=O
InChI Identifier
InChI=1S/C25H29NO8/c1-26(2,34-25-22(29)20(27)21(28)23(33-25)24(30)31)13-7-11-17-16-9-4-3-8-15(16)14-32-19-12-6-5-10-18(17)19/h3-6,8-12,20-23,25,27-29H,7,13-14H2,1-2H3/p+1/b17-11+/t20-,21-,22+,23-,25-/m0/s1
InChI KeyNLZMYODDTAMNJM-GOSZAKIASA-O
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dibenzoxepines. Dibenzoxepines are compounds containing a dibenzoxepine moiety, which consists of two benzene connected by an oxazepine ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzoxepines
Sub ClassDibenzoxepines
Direct ParentDibenzoxepines
Alternative Parents
Substituents
  • Dibenzoxepine
  • Glucuronic acid or derivatives
  • Alkyl aryl ether
  • Beta-hydroxy acid
  • Hydroxy acid
  • Monosaccharide
  • Oxane
  • Benzenoid
  • Pyran
  • Secondary alcohol
  • Carboxylic acid derivative
  • Carboxylic acid
  • Ether
  • Monocarboxylic acid or derivatives
  • Oxacycle
  • N-organohydroxylamine
  • Polyol
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Carbonyl group
  • Organonitrogen compound
  • Organooxygen compound
  • Alcohol
  • Organic nitrogen compound
  • Organic cation
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.022 g/LALOGPS
logP0.3ALOGPS
logP-1.3ChemAxon
logS-4.4ALOGPS
pKa (Strongest Acidic)3.38ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area125.68 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity133.42 m³·mol⁻¹ChemAxon
Polarizability48.36 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+203.04331661259
DarkChem[M-H]-198.3931661259
DeepCCS[M+H]+204.64930932474
DeepCCS[M-H]-202.76930932474
DeepCCS[M-2H]-236.13130932474
DeepCCS[M+Na]+211.31530932474
AllCCS[M+H]+212.732859911
AllCCS[M+H-H2O]+210.732859911
AllCCS[M+NH4]+214.532859911
AllCCS[M+Na]+215.132859911
AllCCS[M-H]-208.832859911
AllCCS[M+Na-2H]-210.032859911
AllCCS[M+HCOO]-211.432859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Doxepin N-oxide glucuronideC[N+](C)(CC\C=C1/C2=C(COC3=C1C=CC=C3)C=CC=C2)O[C@@H]1O[C@@H]([C@@H](O)[C@H](O)[C@H]1O)C(O)=O4938.4Standard polar33892256
Doxepin N-oxide glucuronideC[N+](C)(CC\C=C1/C2=C(COC3=C1C=CC=C3)C=CC=C2)O[C@@H]1O[C@@H]([C@@H](O)[C@H](O)[C@H]1O)C(O)=O3463.7Standard non polar33892256
Doxepin N-oxide glucuronideC[N+](C)(CC\C=C1/C2=C(COC3=C1C=CC=C3)C=CC=C2)O[C@@H]1O[C@@H]([C@@H](O)[C@H](O)[C@H]1O)C(O)=O3716.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Doxepin N-oxide glucuronide,1TMS,isomer #1C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O)[C@@H](O[Si](C)(C)C)[C@H](O)[C@H]1O3649.5Semi standard non polar33892256
Doxepin N-oxide glucuronide,1TMS,isomer #2C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O)[C@@H](O)[C@H](O[Si](C)(C)C)[C@H]1O3650.8Semi standard non polar33892256
Doxepin N-oxide glucuronide,1TMS,isomer #3C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O)[C@@H](O)[C@H](O)[C@H]1O[Si](C)(C)C3625.4Semi standard non polar33892256
Doxepin N-oxide glucuronide,1TMS,isomer #4C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O[Si](C)(C)C)[C@@H](O)[C@H](O)[C@H]1O3614.1Semi standard non polar33892256
Doxepin N-oxide glucuronide,2TMS,isomer #1C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H](O)[C@H]1O3620.6Semi standard non polar33892256
Doxepin N-oxide glucuronide,2TMS,isomer #2C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O)[C@@H](O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@H]1O3635.0Semi standard non polar33892256
Doxepin N-oxide glucuronide,2TMS,isomer #3C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O)[C@@H](O[Si](C)(C)C)[C@H](O)[C@H]1O[Si](C)(C)C3624.8Semi standard non polar33892256
Doxepin N-oxide glucuronide,2TMS,isomer #4C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O[Si](C)(C)C)[C@@H](O)[C@H](O[Si](C)(C)C)[C@H]1O3611.5Semi standard non polar33892256
Doxepin N-oxide glucuronide,2TMS,isomer #5C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O)[C@@H](O)[C@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C3629.5Semi standard non polar33892256
Doxepin N-oxide glucuronide,2TMS,isomer #6C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O[Si](C)(C)C)[C@@H](O)[C@H](O)[C@H]1O[Si](C)(C)C3592.5Semi standard non polar33892256
Doxepin N-oxide glucuronide,3TMS,isomer #1C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@H]1O3616.0Semi standard non polar33892256
Doxepin N-oxide glucuronide,3TMS,isomer #2C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H](O)[C@H]1O[Si](C)(C)C3618.0Semi standard non polar33892256
Doxepin N-oxide glucuronide,3TMS,isomer #3C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O)[C@@H](O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C3653.4Semi standard non polar33892256
Doxepin N-oxide glucuronide,3TMS,isomer #4C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O[Si](C)(C)C)[C@@H](O)[C@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C3621.8Semi standard non polar33892256
Doxepin N-oxide glucuronide,4TMS,isomer #1C[N+](C)(CC/C=C1\C2=CC=CC=C2COC2=CC=CC=C12)O[C@@H]1O[C@H](C(=O)O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C3626.2Semi standard non polar33892256
Doxepin N-oxide glucuronide,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](C(=O)O)O[C@@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)[C@H](O)[C@H]1O3890.6Semi standard non polar33892256
Doxepin N-oxide glucuronide,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](O)[C@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)O[C@H](C(=O)O)[C@H]1O3892.4Semi standard non polar33892256
Doxepin N-oxide glucuronide,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)O[C@H]1[C@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)O[C@H](C(=O)O)[C@@H](O)[C@@H]1O3872.7Semi standard non polar33892256
Doxepin N-oxide glucuronide,1TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)[C@H]1O[C@@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)[C@H](O)[C@@H](O)[C@@H]1O3870.8Semi standard non polar33892256
Doxepin N-oxide glucuronide,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)[C@H]1O[C@@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)[C@H](O)[C@@H](O)[C@@H]1O[Si](C)(C)C(C)(C)C4046.5Semi standard non polar33892256
Doxepin N-oxide glucuronide,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](C(=O)O)O[C@@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)[C@H](O[Si](C)(C)C(C)(C)C)[C@H]1O4048.1Semi standard non polar33892256
Doxepin N-oxide glucuronide,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](C(=O)O)O[C@@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)[C@H](O)[C@H]1O[Si](C)(C)C(C)(C)C4060.1Semi standard non polar33892256
Doxepin N-oxide glucuronide,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)O[C@H]1[C@H](O)[C@@H](C(=O)O)O[C@@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)[C@@H]1O[Si](C)(C)C(C)(C)C4059.1Semi standard non polar33892256
Doxepin N-oxide glucuronide,2TBDMS,isomer #5CC(C)(C)[Si](C)(C)OC(=O)[C@H]1O[C@@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)[C@H](O)[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H]1O4043.3Semi standard non polar33892256
Doxepin N-oxide glucuronide,2TBDMS,isomer #6CC(C)(C)[Si](C)(C)OC(=O)[C@H]1O[C@@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](O)[C@@H]1O4030.4Semi standard non polar33892256
Doxepin N-oxide glucuronide,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)[C@H]1O[C@@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](O)[C@@H]1O[Si](C)(C)C(C)(C)C4182.2Semi standard non polar33892256
Doxepin N-oxide glucuronide,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)[C@H]1O[C@@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)[C@H](O)[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H]1O[Si](C)(C)C(C)(C)C4184.3Semi standard non polar33892256
Doxepin N-oxide glucuronide,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](O[Si](C)(C)C(C)(C)C)[C@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)O[C@H](C(=O)O)[C@H]1O[Si](C)(C)C(C)(C)C4219.9Semi standard non polar33892256
Doxepin N-oxide glucuronide,3TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)[C@H]1O[C@@H](O[N+](C)(C)CC/C=C2\C3=CC=CC=C3COC3=CC=CC=C23)[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H]1O4192.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Doxepin N-oxide glucuronide GC-MS (Non-derivatized) - 70eV, Positivesplash10-0pdi-9344200000-7c05e0446a2dcbb87c2f2017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Doxepin N-oxide glucuronide GC-MS (3 TMS) - 70eV, Positivesplash10-00di-4192026000-b24e3618fe8f1aae78f52017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Doxepin N-oxide glucuronide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Doxepin N-oxide glucuronide 10V, Positive-QTOFsplash10-0fki-0130900000-5c05d7bdf2566ed6bce52017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Doxepin N-oxide glucuronide 20V, Positive-QTOFsplash10-001i-1190000000-8585925627e7de5d63692017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Doxepin N-oxide glucuronide 40V, Positive-QTOFsplash10-059i-9740000000-26056f5325f5dae326322017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Doxepin N-oxide glucuronide 10V, Positive-QTOFsplash10-00dr-0090600000-65c8b2894033b124e7c42021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Doxepin N-oxide glucuronide 20V, Positive-QTOFsplash10-05ci-0090200000-e293c169608d62b2bf692021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Doxepin N-oxide glucuronide 40V, Positive-QTOFsplash10-05g0-2290000000-4b694327d6d02dff71de2021-09-24Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
Biospecimen Locations
  • Blood
  • Urine
Tissue Locations
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131770046
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available