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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-07-22 19:52:43 UTC
Update Date2021-09-14 15:18:17 UTC
HMDB IDHMDB0061177
Secondary Accession Numbers
  • HMDB61177
Metabolite Identification
Common NamePyridine N-oxide glucuronide
DescriptionPyridine N-oxide glucuronide belongs to the class of organic compounds known as glucuronic acid derivatives. Glucuronic acid derivatives are compounds containing a glucuronic acid moiety (or a derivative), which consists of a glucose moiety with the C6 carbon oxidized to a carboxylic acid. Pyridine N-oxide glucuronide is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563866154
SynonymsNot Available
Chemical FormulaC11H14NO7
Average Molecular Weight272.2314
Monoisotopic Molecular Weight272.077026807
IUPAC Name1-{[(2R,3S,4R,5R,6R)-6-carboxy-3,4,5-trihydroxyoxan-2-yl]oxy}pyridin-1-ium
Traditional Name1-{[(2R,3S,4R,5R,6R)-6-carboxy-3,4,5-trihydroxyoxan-2-yl]oxy}pyridin-1-ium
CAS Registry NumberNot Available
SMILES
O[C@H]1[C@H](O)[C@@H](O[N+]2=CC=CC=C2)O[C@H]([C@@H]1O)C(O)=O
InChI Identifier
InChI=1S/C11H13NO7/c13-6-7(14)9(10(16)17)18-11(8(6)15)19-12-4-2-1-3-5-12/h1-9,11,13-15H/p+1/t6-,7-,8+,9-,11-/m1/s1
InChI KeyKITHDEVLYXWSPB-ZBGLXGBJSA-O
Chemical Taxonomy
Description Belongs to the class of organic compounds known as glucuronic acid derivatives. Glucuronic acid derivatives are compounds containing a glucuronic acid moiety (or a derivative), which consists of a glucose moiety with the C6 carbon oxidized to a carboxylic acid.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentGlucuronic acid derivatives
Alternative Parents
Substituents
  • Glucuronic acid or derivatives
  • Beta-hydroxy acid
  • Hydroxy acid
  • Monosaccharide
  • Oxane
  • Pyran
  • Pyridine
  • Pyridinium
  • Heteroaromatic compound
  • Secondary alcohol
  • Carboxylic acid
  • Carboxylic acid derivative
  • Oxacycle
  • Polyol
  • Azacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Organic oxide
  • Hydrocarbon derivative
  • Alcohol
  • Organopnictogen compound
  • Organonitrogen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Organic cation
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility17.4 g/LALOGPS
logP-1.6ALOGPS
logP-3.7ChemAxon
logS-1.2ALOGPS
pKa (Strongest Acidic)2.67ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area120.33 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity60.35 m³·mol⁻¹ChemAxon
Polarizability24.89 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+162.86231661259
DarkChem[M-H]-158.03231661259
DeepCCS[M+H]+158.78430932474
DeepCCS[M-H]-156.42630932474
DeepCCS[M-2H]-190.52530932474
DeepCCS[M+Na]+165.44930932474
AllCCS[M+H]+161.332859911
AllCCS[M+H-H2O]+157.732859911
AllCCS[M+NH4]+164.732859911
AllCCS[M+Na]+165.732859911
AllCCS[M-H]-159.132859911
AllCCS[M+Na-2H]-158.832859911
AllCCS[M+HCOO]-158.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Pyridine N-oxide glucuronideO[C@H]1[C@H](O)[C@@H](O[N+]2=CC=CC=C2)O[C@H]([C@@H]1O)C(O)=O3917.4Standard polar33892256
Pyridine N-oxide glucuronideO[C@H]1[C@H](O)[C@@H](O[N+]2=CC=CC=C2)O[C@H]([C@@H]1O)C(O)=O2435.7Standard non polar33892256
Pyridine N-oxide glucuronideO[C@H]1[C@H](O)[C@@H](O[N+]2=CC=CC=C2)O[C@H]([C@@H]1O)C(O)=O2320.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Pyridine N-oxide glucuronide,1TMS,isomer #1C[Si](C)(C)O[C@H]1[C@H](O)[C@@H](O[N+]2=CC=CC=C2)O[C@@H](C(=O)O)[C@@H]1O2323.8Semi standard non polar33892256
Pyridine N-oxide glucuronide,1TMS,isomer #2C[Si](C)(C)O[C@@H]1[C@@H](O[N+]2=CC=CC=C2)O[C@@H](C(=O)O)[C@H](O)[C@H]1O2326.0Semi standard non polar33892256
Pyridine N-oxide glucuronide,1TMS,isomer #3C[Si](C)(C)O[C@@H]1[C@@H](O)[C@H](O)[C@@H](O[N+]2=CC=CC=C2)O[C@H]1C(=O)O2318.1Semi standard non polar33892256
Pyridine N-oxide glucuronide,1TMS,isomer #4C[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O)[C@H](O)[C@H]1O2258.5Semi standard non polar33892256
Pyridine N-oxide glucuronide,2TMS,isomer #1C[Si](C)(C)O[C@@H]1[C@@H](O[N+]2=CC=CC=C2)O[C@@H](C(=O)O)[C@H](O)[C@H]1O[Si](C)(C)C2341.2Semi standard non polar33892256
Pyridine N-oxide glucuronide,2TMS,isomer #2C[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O)[C@H](O[Si](C)(C)C)[C@H]1O2290.5Semi standard non polar33892256
Pyridine N-oxide glucuronide,2TMS,isomer #3C[Si](C)(C)O[C@H]1[C@H](O)[C@@H](O[N+]2=CC=CC=C2)O[C@@H](C(=O)O)[C@@H]1O[Si](C)(C)C2334.7Semi standard non polar33892256
Pyridine N-oxide glucuronide,2TMS,isomer #4C[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O[Si](C)(C)C)[C@H](O)[C@H]1O2288.6Semi standard non polar33892256
Pyridine N-oxide glucuronide,2TMS,isomer #5C[Si](C)(C)O[C@@H]1[C@@H](O[N+]2=CC=CC=C2)O[C@@H](C(=O)O)[C@H](O[Si](C)(C)C)[C@H]1O2330.9Semi standard non polar33892256
Pyridine N-oxide glucuronide,2TMS,isomer #6C[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O)[C@H](O)[C@H]1O[Si](C)(C)C2287.7Semi standard non polar33892256
Pyridine N-oxide glucuronide,3TMS,isomer #1C[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@H]1O2321.2Semi standard non polar33892256
Pyridine N-oxide glucuronide,3TMS,isomer #2C[Si](C)(C)O[C@@H]1[C@@H](O[N+]2=CC=CC=C2)O[C@@H](C(=O)O)[C@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C2356.4Semi standard non polar33892256
Pyridine N-oxide glucuronide,3TMS,isomer #3C[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O)[C@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C2306.3Semi standard non polar33892256
Pyridine N-oxide glucuronide,3TMS,isomer #4C[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O[Si](C)(C)C)[C@H](O)[C@H]1O[Si](C)(C)C2314.1Semi standard non polar33892256
Pyridine N-oxide glucuronide,4TMS,isomer #1C[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O[Si](C)(C)C)[C@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C2363.8Semi standard non polar33892256
Pyridine N-oxide glucuronide,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)O[C@H]1[C@H](O)[C@@H](O[N+]2=CC=CC=C2)O[C@@H](C(=O)O)[C@@H]1O2588.6Semi standard non polar33892256
Pyridine N-oxide glucuronide,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](O[N+]2=CC=CC=C2)O[C@@H](C(=O)O)[C@H](O)[C@H]1O2596.8Semi standard non polar33892256
Pyridine N-oxide glucuronide,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](O)[C@H](O)[C@@H](O[N+]2=CC=CC=C2)O[C@H]1C(=O)O2586.6Semi standard non polar33892256
Pyridine N-oxide glucuronide,1TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O)[C@H](O)[C@H]1O2537.7Semi standard non polar33892256
Pyridine N-oxide glucuronide,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](O[N+]2=CC=CC=C2)O[C@@H](C(=O)O)[C@H](O)[C@H]1O[Si](C)(C)C(C)(C)C2843.8Semi standard non polar33892256
Pyridine N-oxide glucuronide,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O)[C@H](O[Si](C)(C)C(C)(C)C)[C@H]1O2812.9Semi standard non polar33892256
Pyridine N-oxide glucuronide,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)O[C@H]1[C@H](O)[C@@H](O[N+]2=CC=CC=C2)O[C@@H](C(=O)O)[C@@H]1O[Si](C)(C)C(C)(C)C2837.0Semi standard non polar33892256
Pyridine N-oxide glucuronide,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O[Si](C)(C)C(C)(C)C)[C@H](O)[C@H]1O2810.3Semi standard non polar33892256
Pyridine N-oxide glucuronide,2TBDMS,isomer #5CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](O[N+]2=CC=CC=C2)O[C@@H](C(=O)O)[C@H](O[Si](C)(C)C(C)(C)C)[C@H]1O2845.4Semi standard non polar33892256
Pyridine N-oxide glucuronide,2TBDMS,isomer #6CC(C)(C)[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O)[C@H](O)[C@H]1O[Si](C)(C)C(C)(C)C2820.0Semi standard non polar33892256
Pyridine N-oxide glucuronide,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O[Si](C)(C)C(C)(C)C)[C@H](O[Si](C)(C)C(C)(C)C)[C@H]1O3011.9Semi standard non polar33892256
Pyridine N-oxide glucuronide,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](O[N+]2=CC=CC=C2)O[C@@H](C(=O)O)[C@H](O[Si](C)(C)C(C)(C)C)[C@H]1O[Si](C)(C)C(C)(C)C3026.4Semi standard non polar33892256
Pyridine N-oxide glucuronide,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O)[C@H](O[Si](C)(C)C(C)(C)C)[C@H]1O[Si](C)(C)C(C)(C)C3009.6Semi standard non polar33892256
Pyridine N-oxide glucuronide,3TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O[Si](C)(C)C(C)(C)C)[C@H](O)[C@H]1O[Si](C)(C)C(C)(C)C3022.4Semi standard non polar33892256
Pyridine N-oxide glucuronide,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)[C@@H]1O[C@H](O[N+]2=CC=CC=C2)[C@@H](O[Si](C)(C)C(C)(C)C)[C@H](O[Si](C)(C)C(C)(C)C)[C@H]1O[Si](C)(C)C(C)(C)C3198.1Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Pyridine N-oxide glucuronide GC-MS (Non-derivatized) - 70eV, Positivesplash10-0a4i-9520000000-cb4a2db80613fc91bf2a2017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Pyridine N-oxide glucuronide GC-MS (4 TMS) - 70eV, Positivesplash10-0f6y-4051690000-61cecaa3438bf5ad12e12017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Pyridine N-oxide glucuronide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Pyridine N-oxide glucuronide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyridine N-oxide glucuronide 10V, Positive-QTOFsplash10-0fk9-1090000000-d9220777788aaba246f02017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyridine N-oxide glucuronide 20V, Positive-QTOFsplash10-001i-9000000000-ef2164c91372222536332017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyridine N-oxide glucuronide 40V, Positive-QTOFsplash10-001i-9100000000-da086ecb06f95809f2ec2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyridine N-oxide glucuronide 10V, Positive-QTOFsplash10-0fk9-0090000000-4c0ad7c76ca843d5e0702021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyridine N-oxide glucuronide 20V, Positive-QTOFsplash10-0uni-3490000000-67e835a2b5d6ebe5ef8d2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyridine N-oxide glucuronide 40V, Positive-QTOFsplash10-001i-9000000000-091b834641a18d7e81482021-09-24Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
Biospecimen Locations
  • Blood
  • Urine
Tissue Locations
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131770061
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available