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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2017-03-21 06:11:59 UTC

Update Date

2022-03-07 03:17:53 UTC

HMDB ID

HMDB0062383

Secondary Accession Numbers

HMDB62383

Metabolite Identification

Common Name

4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol

Description

4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol, also known as 4alpha-carboxy-4beta-methyl-zymosterol, belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. Thus, 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol is considered to be a sterol. Based on a literature review a significant number of articles have been published on 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv0541 02241222272D          

 35 38  0  0  1  0            999 V2000
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 33 35  1  0  0  0  0
M  END

HMDB0062383
     RDKit          3D
4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol
 78 81  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv0541 02241222272D          

 35 38  0  0  1  0            999 V2000
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 13 19  1  6  0  0  0
 10  8  1  0  0  0  0
  9  8  1  0  0  0  0
  7  8  2  0  0  0  0
  6  7  1  0  0  0  0
  4  9  1  0  0  0  0
  9 18  1  1  0  0  0
  1  9  1  0  0  0  0
 15 16  1  0  0  0  0
 29 16  1  0  0  0  0
 16 20  1  6  0  0  0
 10 11  1  0  0  0  0
 15 14  1  0  0  0  0
  5  6  1  0  0  0  0
 31  4  1  0  0  0  0
  5  4  1  0  0  0  0
  2  1  1  0  0  0  0
  3 31  1  0  0  0  0
  3  2  1  0  0  0  0
  4 21  1  6  0  0  0
  3 22  1  1  0  0  0
 28 23  1  0  0  0  0
 24 23  1  0  0  0  0
 25 24  2  0  0  0  0
 26 25  1  0  0  0  0
 27 25  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  6  0  0  0
 31 33  1  0  0  0  0
 31 32  1  1  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0062383

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@](C)(C(O)=O)[C@]1([H])CC3)[C@H](C)CCC=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C29H46O3/c1-18(2)8-7-9-19(3)21-11-12-22-20-10-13-24-28(5,23(20)14-16-27(21,22)4)17-15-25(30)29(24,6)26(31)32/h8,19,21-22,24-25,30H,7,9-17H2,1-6H3,(H,31,32)/t19-,21-,22+,24-,25+,27-,28-,29+/m1/s1

> <INCHI_KEY>
MYWAIWDQTCHPTH-LJAIZBFVSA-N

> <FORMULA>
C29H46O3

> <MOLECULAR_WEIGHT>
442.6737

> <EXACT_MASS>
442.344695338

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_AVERAGE_POLARIZABILITY>
54.41790284504158

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,5S,6S,7R,11R,14R,15R)-5-hydroxy-2,6,15-trimethyl-14-[(2R)-6-methylhept-5-en-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-ene-6-carboxylic acid

> <ALOGPS_LOGP>
6.64

> <JCHEM_LOGP>
6.598317999999999

> <ALOGPS_LOGS>
-5.31

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.716008813949259

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.590055980466473

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0380298101870595

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
131.7868

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.17e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,5S,6S,7R,11R,14R,15R)-5-hydroxy-2,6,15-trimethyl-14-[(2R)-6-methylhept-5-en-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-ene-6-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0062383
     RDKit          3D
4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol
 78 81  0  0  0  0  0  0  0  0999 V2000
    7.4145    2.1775   -0.7583 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7161    0.9151   -1.0786 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6617    0.4792   -2.4987 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1464    0.1864   -0.0980 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4428   -1.0754   -0.3812 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9725   -1.1069   -0.1520 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4819   -0.8257    1.2328 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7903    0.5344    1.7508 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0887   -1.3116    1.4775 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7045   -1.0198    2.9058 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2807   -0.4488    2.8629 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2001   -0.9780    1.5711 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3393   -0.2808    0.9672 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6659   -0.6949   -0.2622 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7515   -1.6922   -0.8811 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6949   -1.4793   -0.6105 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0126   -0.7309    0.6496 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0308    0.7162    0.3688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8702   -0.2035   -0.9926 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4018    0.7668   -2.0296 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5716   -1.4033   -1.5910 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9787   -1.0867   -2.0273 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8119   -0.5052   -0.9329 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.0940   -0.2804   -1.3679 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1368    0.7627   -0.4353 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.1840    1.8495   -1.4509 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8899    1.2627    0.7724 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4304    2.3979    0.8058 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0222    0.4816    1.9170 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7830    0.3856    0.0430 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0878    1.4831    0.8393 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0601    0.7995    1.6878 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4713    2.8191   -1.6593 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8115    2.6987    0.0128 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4243    1.9923   -0.3185 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5731    0.3072   -2.7377 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2650   -0.4250   -2.6991 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9794    1.2822   -3.1909 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2843    0.5929    0.8965 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9756   -1.8562    0.2492 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6297   -1.3122   -1.4613 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5559   -0.3481   -0.8959 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5617   -2.0740   -0.5467 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1104   -1.5250    1.8841 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9121    1.0226    2.2520 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5989    0.6097    2.4923 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0950    1.1877    0.8793 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0904   -2.4134    1.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4004   -0.4223    3.4792 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6068   -1.9918    3.4914 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2524    0.6260    3.0193 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3367   -0.9165    3.6849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3309   -2.0678    1.6506 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9423   -1.6604   -1.9939 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0336   -2.7273   -0.5557 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2014   -2.4738   -0.6684 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1186   -0.9029   -1.4845 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7763    1.3852    1.2265 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9096    1.1460   -0.0989 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1909    0.9176   -0.3643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2931    0.6706   -2.2290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8608    0.4374   -3.0084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5753    1.8192   -1.8039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6304   -2.1687   -0.7893 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9867   -1.7211   -2.4632 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4448   -2.0758   -2.3002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0064   -0.4900   -2.9595 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8138   -1.2119   -0.0867 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4100   -0.8824   -2.0633 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2643    2.1801   -1.5205 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8988    1.5727   -2.4633 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6555    2.7340   -1.0412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8980   -0.0042    2.1226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9398   -0.4420    0.8022 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7138    2.2944    0.2187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8851    1.9053    1.5153 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4254    1.5500    2.1528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6089    0.2872    2.5314 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  6
 14 19  1  0
 19 20  1  6
 19 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 25 27  1  1
 27 28  2  0
 27 29  1  0
 25 30  1  0
 30 31  1  0
 31 32  1  0
 17  9  1  0
 30 19  1  0
 17 12  1  0
 32 13  1  0
  1 33  1  0
  1 34  1  0
  1 35  1  0
  3 36  1  0
  3 37  1  0
  3 38  1  0
  4 39  1  0
  5 40  1  0
  5 41  1  0
  6 42  1  0
  6 43  1  0
  7 44  1  1
  8 45  1  0
  8 46  1  0
  8 47  1  0
  9 48  1  1
 10 49  1  0
 10 50  1  0
 11 51  1  0
 11 52  1  0
 12 53  1  1
 15 54  1  0
 15 55  1  0
 16 56  1  0
 16 57  1  0
 18 58  1  0
 18 59  1  0
 18 60  1  0
 20 61  1  0
 20 62  1  0
 20 63  1  0
 21 64  1  0
 21 65  1  0
 22 66  1  0
 22 67  1  0
 23 68  1  1
 24 69  1  0
 26 70  1  0
 26 71  1  0
 26 72  1  0
 29 73  1  0
 30 74  1  1
 31 75  1  0
 31 76  1  0
 32 77  1  0
 32 78  1  0
M  END

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      -6.389  -0.780   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -7.738  -1.520   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -7.738  -3.087   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -5.084  -3.087   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.749  -3.855   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.386  -3.087   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.386  -1.520   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.749  -0.780   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -5.084  -1.520   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.749   0.728   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.386   1.511   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.081   0.728   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.081  -0.780   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.384  -1.259   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.255  -0.041   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.384   1.207   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.081   2.309   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -5.084  -0.012   0.000  0.00  0.00           C+0
HETATM   19  H   UNK     0      -1.081  -2.332   0.000  0.00  0.00           H+0
HETATM   20  H   UNK     0       1.733   1.961   0.000  0.00  0.00           H+0
HETATM   21  H   UNK     0      -5.088  -4.540   0.000  0.00  0.00           H+0
HETATM   22  O   UNK     0      -9.106  -3.890   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       3.052   2.788   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.385   3.558   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.719   2.788   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.719   1.248   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       7.053   3.558   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.718   3.558   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.384   2.788   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -0.949   3.558   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -6.389  -3.855   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -7.723  -4.625   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -6.389  -5.395   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -7.723  -6.165   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0      -5.055  -6.165   0.000  0.00  0.00           O+0
CONECT    1    9    2                                                       
CONECT    2    1    3                                                       
CONECT    3   31    2   22                                                  
CONECT    4    9   31    5   21                                             
CONECT    5    6    4                                                       
CONECT    6    7    5                                                       
CONECT    7   13    8    6                                                  
CONECT    8   10    9    7                                                  
CONECT    9    8    4   18    1                                             
CONECT   10    8   11                                                       
CONECT   11   12   10                                                       
CONECT   12   13   16   11   17                                             
CONECT   13   12    7   14   19                                             
CONECT   14   13   15                                                       
CONECT   15   16   14                                                       
CONECT   16   12   15   29   20                                             
CONECT   17   12                                                            
CONECT   18    9                                                            
CONECT   19   13                                                            
CONECT   20   16                                                            
CONECT   21    4                                                            
CONECT   22    3                                                            
CONECT   23   28   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25                                                            
CONECT   28   23   29                                                       
CONECT   29   16   28   30                                                  
CONECT   30   29                                                            
CONECT   31    4    3   33   32                                             
CONECT   32   31                                                            
CONECT   33   31   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   76    0
END

COMPND    HMDB0062383
HETATM    1  C1  UNL     1       7.415   2.177  -0.758  1.00  0.00           C  
HETATM    2  C2  UNL     1       6.716   0.915  -1.079  1.00  0.00           C  
HETATM    3  C3  UNL     1       6.662   0.479  -2.499  1.00  0.00           C  
HETATM    4  C4  UNL     1       6.146   0.186  -0.098  1.00  0.00           C  
HETATM    5  C5  UNL     1       5.443  -1.075  -0.381  1.00  0.00           C  
HETATM    6  C6  UNL     1       3.972  -1.107  -0.152  1.00  0.00           C  
HETATM    7  C7  UNL     1       3.482  -0.826   1.233  1.00  0.00           C  
HETATM    8  C8  UNL     1       3.790   0.534   1.751  1.00  0.00           C  
HETATM    9  C9  UNL     1       2.089  -1.312   1.478  1.00  0.00           C  
HETATM   10  C10 UNL     1       1.704  -1.020   2.906  1.00  0.00           C  
HETATM   11  C11 UNL     1       0.281  -0.449   2.863  1.00  0.00           C  
HETATM   12  C12 UNL     1      -0.200  -0.978   1.571  1.00  0.00           C  
HETATM   13  C13 UNL     1      -1.339  -0.281   0.967  1.00  0.00           C  
HETATM   14  C14 UNL     1      -1.666  -0.695  -0.262  1.00  0.00           C  
HETATM   15  C15 UNL     1      -0.751  -1.692  -0.881  1.00  0.00           C  
HETATM   16  C16 UNL     1       0.695  -1.479  -0.610  1.00  0.00           C  
HETATM   17  C17 UNL     1       1.013  -0.731   0.650  1.00  0.00           C  
HETATM   18  C18 UNL     1       1.031   0.716   0.369  1.00  0.00           C  
HETATM   19  C19 UNL     1      -2.870  -0.204  -0.993  1.00  0.00           C  
HETATM   20  C20 UNL     1      -2.402   0.767  -2.030  1.00  0.00           C  
HETATM   21  C21 UNL     1      -3.572  -1.403  -1.591  1.00  0.00           C  
HETATM   22  C22 UNL     1      -4.979  -1.087  -2.027  1.00  0.00           C  
HETATM   23  C23 UNL     1      -5.812  -0.505  -0.933  1.00  0.00           C  
HETATM   24  O1  UNL     1      -7.094  -0.280  -1.368  1.00  0.00           O  
HETATM   25  C24 UNL     1      -5.137   0.763  -0.435  1.00  0.00           C  
HETATM   26  C25 UNL     1      -5.184   1.849  -1.451  1.00  0.00           C  
HETATM   27  C26 UNL     1      -5.890   1.263   0.772  1.00  0.00           C  
HETATM   28  O2  UNL     1      -6.430   2.398   0.806  1.00  0.00           O  
HETATM   29  O3  UNL     1      -6.022   0.482   1.917  1.00  0.00           O  
HETATM   30  C27 UNL     1      -3.783   0.386   0.043  1.00  0.00           C  
HETATM   31  C28 UNL     1      -3.088   1.483   0.839  1.00  0.00           C  
HETATM   32  C29 UNL     1      -2.060   0.799   1.688  1.00  0.00           C  
HETATM   33  H1  UNL     1       7.471   2.819  -1.659  1.00  0.00           H  
HETATM   34  H2  UNL     1       6.811   2.699   0.013  1.00  0.00           H  
HETATM   35  H3  UNL     1       8.424   1.992  -0.318  1.00  0.00           H  
HETATM   36  H4  UNL     1       5.573   0.307  -2.738  1.00  0.00           H  
HETATM   37  H5  UNL     1       7.265  -0.425  -2.699  1.00  0.00           H  
HETATM   38  H6  UNL     1       6.979   1.282  -3.191  1.00  0.00           H  
HETATM   39  H7  UNL     1       6.284   0.593   0.896  1.00  0.00           H  
HETATM   40  H8  UNL     1       5.976  -1.856   0.249  1.00  0.00           H  
HETATM   41  H9  UNL     1       5.630  -1.312  -1.461  1.00  0.00           H  
HETATM   42  H10 UNL     1       3.556  -0.348  -0.896  1.00  0.00           H  
HETATM   43  H11 UNL     1       3.562  -2.074  -0.547  1.00  0.00           H  
HETATM   44  H12 UNL     1       4.110  -1.525   1.884  1.00  0.00           H  
HETATM   45  H13 UNL     1       2.912   1.023   2.252  1.00  0.00           H  
HETATM   46  H14 UNL     1       4.599   0.610   2.492  1.00  0.00           H  
HETATM   47  H15 UNL     1       4.095   1.188   0.879  1.00  0.00           H  
HETATM   48  H16 UNL     1       2.090  -2.413   1.333  1.00  0.00           H  
HETATM   49  H17 UNL     1       2.400  -0.422   3.479  1.00  0.00           H  
HETATM   50  H18 UNL     1       1.607  -1.992   3.491  1.00  0.00           H  
HETATM   51  H19 UNL     1       0.252   0.626   3.019  1.00  0.00           H  
HETATM   52  H20 UNL     1      -0.337  -0.916   3.685  1.00  0.00           H  
HETATM   53  H21 UNL     1      -0.331  -2.068   1.651  1.00  0.00           H  
HETATM   54  H22 UNL     1      -0.942  -1.660  -1.994  1.00  0.00           H  
HETATM   55  H23 UNL     1      -1.034  -2.727  -0.556  1.00  0.00           H  
HETATM   56  H24 UNL     1       1.201  -2.474  -0.668  1.00  0.00           H  
HETATM   57  H25 UNL     1       1.119  -0.903  -1.484  1.00  0.00           H  
HETATM   58  H26 UNL     1       0.776   1.385   1.227  1.00  0.00           H  
HETATM   59  H27 UNL     1       1.910   1.146  -0.099  1.00  0.00           H  
HETATM   60  H28 UNL     1       0.191   0.918  -0.364  1.00  0.00           H  
HETATM   61  H29 UNL     1      -1.293   0.671  -2.229  1.00  0.00           H  
HETATM   62  H30 UNL     1      -2.861   0.437  -3.008  1.00  0.00           H  
HETATM   63  H31 UNL     1      -2.575   1.819  -1.804  1.00  0.00           H  
HETATM   64  H32 UNL     1      -3.630  -2.169  -0.789  1.00  0.00           H  
HETATM   65  H33 UNL     1      -2.987  -1.721  -2.463  1.00  0.00           H  
HETATM   66  H34 UNL     1      -5.445  -2.076  -2.300  1.00  0.00           H  
HETATM   67  H35 UNL     1      -5.006  -0.490  -2.959  1.00  0.00           H  
HETATM   68  H36 UNL     1      -5.814  -1.212  -0.087  1.00  0.00           H  
HETATM   69  H37 UNL     1      -7.410  -0.882  -2.063  1.00  0.00           H  
HETATM   70  H38 UNL     1      -6.264   2.180  -1.520  1.00  0.00           H  
HETATM   71  H39 UNL     1      -4.899   1.573  -2.463  1.00  0.00           H  
HETATM   72  H40 UNL     1      -4.656   2.734  -1.041  1.00  0.00           H  
HETATM   73  H41 UNL     1      -6.898  -0.004   2.123  1.00  0.00           H  
HETATM   74  H42 UNL     1      -3.940  -0.442   0.802  1.00  0.00           H  
HETATM   75  H43 UNL     1      -2.714   2.294   0.219  1.00  0.00           H  
HETATM   76  H44 UNL     1      -3.885   1.905   1.515  1.00  0.00           H  
HETATM   77  H45 UNL     1      -1.425   1.550   2.153  1.00  0.00           H  
HETATM   78  H46 UNL     1      -2.609   0.287   2.531  1.00  0.00           H  
CONECT    1    2   33   34   35
CONECT    2    3    4    4
CONECT    3   36   37   38
CONECT    4    5   39
CONECT    5    6   40   41
CONECT    6    7   42   43
CONECT    7    8    9   44
CONECT    8   45   46   47
CONECT    9   10   17   48
CONECT   10   11   49   50
CONECT   11   12   51   52
CONECT   12   13   17   53
CONECT   13   14   14   32
CONECT   14   15   19
CONECT   15   16   54   55
CONECT   16   17   56   57
CONECT   17   18
CONECT   18   58   59   60
CONECT   19   20   21   30
CONECT   20   61   62   63
CONECT   21   22   64   65
CONECT   22   23   66   67
CONECT   23   24   25   68
CONECT   24   69
CONECT   25   26   27   30
CONECT   26   70   71   72
CONECT   27   28   28   29
CONECT   29   73
CONECT   30   31   74
CONECT   31   32   75   76
CONECT   32   77   78
END

HMDB0062383
     RDKit          3D
4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol
 78 81  0  0  0  0  0  0  0  0999 V2000
    7.4145    2.1775   -0.7583 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7161    0.9151   -1.0786 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6617    0.4792   -2.4987 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1464    0.1864   -0.0980 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4428   -1.0754   -0.3812 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9725   -1.1069   -0.1520 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4819   -0.8257    1.2328 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7903    0.5344    1.7508 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0887   -1.3116    1.4775 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7045   -1.0198    2.9058 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2807   -0.4488    2.8629 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2001   -0.9780    1.5711 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3393   -0.2808    0.9672 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6659   -0.6949   -0.2622 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7515   -1.6922   -0.8811 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6949   -1.4793   -0.6105 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0126   -0.7309    0.6496 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0308    0.7162    0.3688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8702   -0.2035   -0.9926 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4018    0.7668   -2.0296 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5716   -1.4033   -1.5910 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9787   -1.0867   -2.0273 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8119   -0.5052   -0.9329 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.0940   -0.2804   -1.3679 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1368    0.7627   -0.4353 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.1840    1.8495   -1.4509 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8899    1.2627    0.7724 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4304    2.3979    0.8058 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0222    0.4816    1.9170 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7830    0.3856    0.0430 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0878    1.4831    0.8393 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0601    0.7995    1.6878 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4713    2.8191   -1.6593 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8115    2.6987    0.0128 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4243    1.9923   -0.3185 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5731    0.3072   -2.7377 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2650   -0.4250   -2.6991 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9794    1.2822   -3.1909 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2843    0.5929    0.8965 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9756   -1.8562    0.2492 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6297   -1.3122   -1.4613 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5559   -0.3481   -0.8959 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5617   -2.0740   -0.5467 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1104   -1.5250    1.8841 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9121    1.0226    2.2520 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5989    0.6097    2.4923 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0950    1.1877    0.8793 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0904   -2.4134    1.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4004   -0.4223    3.4792 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6068   -1.9918    3.4914 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2524    0.6260    3.0193 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3367   -0.9165    3.6849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3309   -2.0678    1.6506 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9423   -1.6604   -1.9939 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0336   -2.7273   -0.5557 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2014   -2.4738   -0.6684 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1186   -0.9029   -1.4845 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7763    1.3852    1.2265 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9096    1.1460   -0.0989 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1909    0.9176   -0.3643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2931    0.6706   -2.2290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8608    0.4374   -3.0084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5753    1.8192   -1.8039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6304   -2.1687   -0.7893 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9867   -1.7211   -2.4632 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4448   -2.0758   -2.3002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0064   -0.4900   -2.9595 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8138   -1.2119   -0.0867 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4100   -0.8824   -2.0633 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2643    2.1801   -1.5205 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8988    1.5727   -2.4633 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6555    2.7340   -1.0412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8980   -0.0042    2.1226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9398   -0.4420    0.8022 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7138    2.2944    0.2187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8851    1.9053    1.5153 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4254    1.5500    2.1528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6089    0.2872    2.5314 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  6
 14 19  1  0
 19 20  1  6
 19 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 25 27  1  1
 27 28  2  0
 27 29  1  0
 25 30  1  0
 30 31  1  0
 31 32  1  0
 17  9  1  0
 30 19  1  0
 17 12  1  0
 32 13  1  0
  1 33  1  0
  1 34  1  0
  1 35  1  0
  3 36  1  0
  3 37  1  0
  3 38  1  0
  4 39  1  0
  5 40  1  0
  5 41  1  0
  6 42  1  0
  6 43  1  0
  7 44  1  1
  8 45  1  0
  8 46  1  0
  8 47  1  0
  9 48  1  1
 10 49  1  0
 10 50  1  0
 11 51  1  0
 11 52  1  0
 12 53  1  1
 15 54  1  0
 15 55  1  0
 16 56  1  0
 16 57  1  0
 18 58  1  0
 18 59  1  0
 18 60  1  0
 20 61  1  0
 20 62  1  0
 20 63  1  0
 21 64  1  0
 21 65  1  0
 22 66  1  0
 22 67  1  0
 23 68  1  1
 24 69  1  0
 26 70  1  0
 26 71  1  0
 26 72  1  0
 29 73  1  0
 30 74  1  1
 31 75  1  0
 31 76  1  0
 32 77  1  0
 32 78  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(3beta,4alpha,5alpha)-3-Hydroxy-4-methylcholesta-8,24-diene-4-carboxylic acid	ChEBI
4alpha-Carboxy-4beta-methyl-5alpha-cholesta-8,24-dien-3beta-ol	ChEBI
4alpha-Carboxy-4beta-methyl-cholesta-8,24-dien-3beta-ol	ChEBI
4alpha-Carboxy-4beta-methyl-zymosterol	ChEBI
(3b,4a,5a)-3-Hydroxy-4-methylcholesta-8,24-diene-4-carboxylate	Generator
(3b,4a,5a)-3-Hydroxy-4-methylcholesta-8,24-diene-4-carboxylic acid	Generator
(3beta,4alpha,5alpha)-3-Hydroxy-4-methylcholesta-8,24-diene-4-carboxylate	Generator
(3Β,4α,5α)-3-hydroxy-4-methylcholesta-8,24-diene-4-carboxylate	Generator
(3Β,4α,5α)-3-hydroxy-4-methylcholesta-8,24-diene-4-carboxylic acid	Generator
4a-Carboxy-4b-methyl-5a-cholesta-8,24-dien-3b-ol	Generator
4a-Carboxy-4b-methyl-cholesta-8,24-dien-3b-ol	Generator
4Α-carboxy-4β-methyl-cholesta-8,24-dien-3β-ol	Generator
4a-Carboxy-4b-methyl-zymosterol	Generator
4Α-carboxy-4β-methyl-zymosterol	Generator

Chemical Formula

C₂₉H₄₆O₃

Average Molecular Weight

442.6737

Monoisotopic Molecular Weight

442.344695338

IUPAC Name

(2S,5S,6S,7R,11R,14R,15R)-5-hydroxy-2,6,15-trimethyl-14-[(2R)-6-methylhept-5-en-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-ene-6-carboxylic acid

Traditional Name

(2S,5S,6S,7R,11R,14R,15R)-5-hydroxy-2,6,15-trimethyl-14-[(2R)-6-methylhept-5-en-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-ene-6-carboxylic acid

CAS Registry Number

Not Available

SMILES

[H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@](C)(C(O)=O)[C@]1([H])CC3)[C@H](C)CCC=C(C)C

InChI Identifier

InChI=1S/C29H46O3/c1-18(2)8-7-9-19(3)21-11-12-22-20-10-13-24-28(5,23(20)14-16-27(21,22)4)17-15-25(30)29(24,6)26(31)32/h8,19,21-22,24-25,30H,7,9-17H2,1-6H3,(H,31,32)/t19-,21-,22+,24-,25+,27-,28-,29+/m1/s1

InChI Key

MYWAIWDQTCHPTH-LJAIZBFVSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Cholesterol-skeleton
Cholestane-skeleton
4-carboxy steroid
Steroid acid
3-hydroxysteroid
3-beta-hydroxysteroid
Hydroxysteroid
15-hydroxysteroid
Steroid
Beta-hydroxy acid
Hydroxy acid
Cyclic alcohol
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Alcohol
Organic oxygen compound
Carbonyl group
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

3beta-sterol (CHEBI:50591 )

Ontology

Not Available

Exogenous (HMDB: HMDB0062383)

Herbs and Spices (FooDB: FOOD00866)

Nut

Almond (FooDB: FOOD00148)
Brazil nut (FooDB: FOOD00024)
Cashew nut (FooDB: FOOD00011)
Chestnut (FooDB: FOOD00045)
Hazelnut (FooDB: FOOD00376)
Peanut (FooDB: FOOD00016)
Pecan nut (FooDB: FOOD00044)
Pine nut (FooDB: FOOD00138)
Pistachio (FooDB: FOOD00140)
Walnut (FooDB: FOOD00608)
Acorn (FooDB: FOOD00282)
Beech nut (FooDB: FOOD00299)
Butternut (FooDB: FOOD00316)
Chinese chestnut (FooDB: FOOD00331)
European chestnut (FooDB: FOOD00363)
Hickory nut (FooDB: FOOD00377)
Macadamia nut (FooDB: FOOD00525)
Mixed nuts (FooDB: FOOD00771)
Pili nut (FooDB: FOOD00432)
Colorado pinyon (FooDB: FOOD00433)
Black walnut (FooDB: FOOD00093)
Common walnut (FooDB: FOOD00094)
Japanese chestnut (FooDB: FOOD00385)
Common hazelnut (FooDB: FOOD00062)
Macadamia nut (M. tetraphylla) (FooDB: FOOD00225)
Japanese walnut (FooDB: FOOD00240)
Nuts (FooDB: FOOD00869)

Fruit

Pome

Drupe

Apricot (FooDB: FOOD00144)
Prunus (Cherry, Plum) (FooDB: FOOD00143)
Nectarine (FooDB: FOOD00229)
Peach (FooDB: FOOD00149)
European plum (FooDB: FOOD00147)
Sour cherry (FooDB: FOOD00146)
Sweet cherry (FooDB: FOOD00145)
Common chokecherry (FooDB: FOOD00562)
Peach (var.) (FooDB: FOOD00230)

Tropical fruit

Berry

Bilberry (FooDB: FOOD00193)
Rubus (Blackberry, Raspberry) (FooDB: FOOD00160)
Vaccinium (Blueberry, Cranberry, Huckleberry) (FooDB: FOOD00188)
Blackcurrant (FooDB: FOOD00155)
Redcurrant (FooDB: FOOD00156)
Elderberry (FooDB: FOOD00358)
Gooseberry (FooDB: FOOD00157)
Grape (FooDB: FOOD00369)
Lingonberry (FooDB: FOOD00194)
Loganberry (FooDB: FOOD00400)
Strawberry (FooDB: FOOD00083)
Boysenberry (FooDB: FOOD00542)
American cranberry (FooDB: FOOD00192)
Common grape (FooDB: FOOD00204)
Strawberry guava (FooDB: FOOD00482)
Black mulberry (FooDB: FOOD00117)
Red raspberry (FooDB: FOOD00162)
Muscadine grape (FooDB: FOOD00203)
Salmonberry (FooDB: FOOD00456)
Alaska blueberry (FooDB: FOOD00380)
Sea-buckthornberry (FooDB: FOOD00087)
Black elderberry (FooDB: FOOD00166)
Black crowberry (FooDB: FOOD00075)
Black huckleberry (FooDB: FOOD00084)
Mulberry (FooDB: FOOD00116)
Black chokeberry (FooDB: FOOD00136)
Cloudberry (FooDB: FOOD00161)
Black raspberry (FooDB: FOOD00163)
Rowanberry (FooDB: FOOD00176)
Lowbush blueberry (FooDB: FOOD00189)
Sparkleberry (FooDB: FOOD00190)
Highbush blueberry (FooDB: FOOD00191)
Arctic blackberry (FooDB: FOOD00207)
Bayberry (FooDB: FOOD00209)
Elliott's blueberry (FooDB: FOOD00210)
Canada blueberry (FooDB: FOOD00211)
Bog bilberry (FooDB: FOOD00212)
Buffalo currant (FooDB: FOOD00213)
European cranberry (FooDB: FOOD00217)
Deerberry (FooDB: FOOD00218)
Cascade huckleberry (FooDB: FOOD00220)
Oval-leaf huckleberry (FooDB: FOOD00221)
Evergreen huckleberry (FooDB: FOOD00222)
Red huckleberry (FooDB: FOOD00223)
Summer grape (FooDB: FOOD00227)
Fox grape (FooDB: FOOD00228)
Half-highbush blueberry (FooDB: FOOD00248)
Jostaberry (FooDB: FOOD00257)
Sweet rowanberry (FooDB: FOOD00265)
Skunk currant (FooDB: FOOD00267)
Squashberry (FooDB: FOOD00344)
Ohelo berry (FooDB: FOOD00419)
Chinese bayberry (FooDB: FOOD00852)
Saskatoon berry (FooDB: FOOD00884)
Nanking cherry (FooDB: FOOD00885)

Other fruit

Date (FooDB: FOOD00135)
Fig (FooDB: FOOD00081)
Jujube (FooDB: FOOD00388)

Citrus

Grapefruit (FooDB: FOOD00256)
Lemon (FooDB: FOOD00054)
Lime (FooDB: FOOD00053)
Sweet orange (FooDB: FOOD00057)
Mandarin orange (Clementine, Tangerine) (FooDB: FOOD00056)
Persian lime (FooDB: FOOD00543)
Pummelo (FooDB: FOOD00055)
Grapefruit/Pummelo hybrid (FooDB: FOOD00255)
Citrus (FooDB: FOOD00859)

Fruits (FooDB: FOOD00871)

Vegetable

Shoot vegetable

Fruit vegetable

Eggplant (FooDB: FOOD00174)
Avocado (FooDB: FOOD00130)
Groundcherry (FooDB: FOOD00371)
Olive (FooDB: FOOD00121)
Pepper (FooDB: FOOD00040)
Garden tomato (FooDB: FOOD00171)
Mexican groundcherry (FooDB: FOOD00491)
Green bell pepper (FooDB: FOOD00877)
Yellow bell pepper (FooDB: FOOD00878)
Red bell pepper (FooDB: FOOD00880)
Italian sweet red pepper (FooDB: FOOD00881)
Garden tomato (var.) (FooDB: FOOD00173)
Cherry tomato (FooDB: FOOD00172)
Pepper (C. baccatum) (FooDB: FOOD00231)
Pepper (C. chinense) (FooDB: FOOD00232)
Pepper (Capsicum) (FooDB: FOOD00233)
Pepper (C. frutescens) (FooDB: FOOD00428)
Pepper (C. pubescens) (FooDB: FOOD00849)
Orange bell pepper (FooDB: FOOD00879)

Root vegetable

Cabbage

Leaf vegetable

Lettuce (FooDB: FOOD00095)
Swiss chard (FooDB: FOOD00237)
Garden cress (FooDB: FOOD00099)
Endive (FooDB: FOOD00048)
Spinach (FooDB: FOOD00178)
Common beet (FooDB: FOOD00025)
Garland chrysanthemum (FooDB: FOOD00333)
Jute (FooDB: FOOD00389)
Lambsquarters (FooDB: FOOD00394)
New Zealand spinach (FooDB: FOOD00415)
Swamp cabbage (FooDB: FOOD00091)
Rocket salad (ssp.) (FooDB: FOOD00077)
Yautia (FooDB: FOOD00510)
Romaine lettuce (FooDB: FOOD00888)
Rocket salad (FooDB: FOOD00244)
Chicory leaves (FooDB: FOOD00250)
Corn salad (FooDB: FOOD00340)
Malabar spinach (FooDB: FOOD00404)
Ostrich fern (FooDB: FOOD00556)
Green vegetables (FooDB: FOOD00872)

Mushroom

Tuber

Onion-family vegetable

Leek (FooDB: FOOD00007)
Allium (FooDB: FOOD00005)
Wild leek (FooDB: FOOD00396)
Shallot (FooDB: FOOD00243)
Garden onion (FooDB: FOOD00006)
Garden onion (var.) (FooDB: FOOD00226)
Onion-family vegetables (FooDB: FOOD00855)
Green onion (FooDB: FOOD00963)
Red onion (FooDB: FOOD00962)

Other vegetable

Okra (FooDB: FOOD00420)
Horseradish tree (FooDB: FOOD00379)
Sacred lotus (FooDB: FOOD00402)
Tree fern (FooDB: FOOD00797)
Chinese water chestnut (FooDB: FOOD00332)
Nopal (FooDB: FOOD00416)
Carob (FooDB: FOOD00321)
Agave (FooDB: FOOD00563)
Narrowleaf cattail (FooDB: FOOD00564)
Giant butterbur (FooDB: FOOD00314)
Sesbania flower (FooDB: FOOD00469)

Stalk vegetable

Brassica

Brassicas (FooDB: FOOD00857)

Cereal and cereal product

Other bread

Other bread (FooDB: FOOD00269)

Cereal

Cereal product

Dough

Sourdough (FooDB: FOOD00275)

Cereals and cereal products (FooDB: FOOD00858)

Pulse

Bean

Lentil

Lentils (FooDB: FOOD00098)

Pea

Other pulse

White lupine (FooDB: FOOD00403)
Lupine (FooDB: FOOD00104)

Pulses (FooDB: FOOD00867)

Soy

Soy bean (FooDB: FOOD00085)

Soy product

Other soy product (FooDB: FOOD00271)

Abalone (FooDB: FOOD00279)
Conch (FooDB: FOOD00611)

Gourd

Chayote (FooDB: FOOD00325)
Cucumber (FooDB: FOOD00065)
Muskmelon (FooDB: FOOD00064)
Cucurbita (FooDB: FOOD00066)
Watermelon (FooDB: FOOD00052)
Bitter gourd (FooDB: FOOD00115)
Calabash (FooDB: FOOD00318)
Towel gourd (FooDB: FOOD00492)
Winter squash (FooDB: FOOD00283)
Butternut squash (FooDB: FOOD00317)
Wax gourd (FooDB: FOOD00499)
Green zucchini (FooDB: FOOD00875)
Yellow zucchini (FooDB: FOOD00876)
Japanese pumpkin (FooDB: FOOD00886)
Sunburst squash (pattypan squash) (FooDB: FOOD00874)
Tinda (FooDB: FOOD00559)
Horned melon (FooDB: FOOD00761)

Tea

Herbal tea

Greenthread tea (FooDB: FOOD00820)

Cocoa and cocoa product

Cocoa

Cocoa bean (FooDB: FOOD00182)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	0.0022 g/l	ALOGPS
LogP	6.64	ALOGPS

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	6.64	ALOGPS
logP	6.6	ChemAxon
logS	-5.3	ALOGPS
pKa (Strongest Acidic)	4.59	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	131.79 m³·mol⁻¹	ChemAxon
Polarizability	54.42 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	209.543	31661259
DarkChem	[M-H]-	203.833	31661259
DeepCCS	[M-2H]-	246.821	30932474
DeepCCS	[M+Na]+	220.928	30932474
AllCCS	[M+H]+	212.9	32859911
AllCCS	[M+H-H2O]+	211.1	32859911
AllCCS	[M+NH4]+	214.6	32859911
AllCCS	[M+Na]+	215.1	32859911
AllCCS	[M-H]-	213.5	32859911
AllCCS	[M+Na-2H]-	215.6	32859911
AllCCS	[M+HCOO]-	218.1	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm √ó 2.1 mm; 1.7 Œºmparticle diameter). Predicted by Afia on May 17, 2022.	9.73 minutes	32390414
Predicted by Siyang on May 30, 2022	23.0443 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.53 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	3534.0 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	536.0 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	281.5 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	215.5 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	551.8 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	913.5 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	1013.0 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	95.6 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1784.5 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	680.2 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1786.3 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	636.6 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	581.0 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	241.1 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	556.9 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.6 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
4??-carboxy-4??-methyl-5??-cholesta-8,24-dien-3??-ol	[H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@](C)(C(O)=O)[C@]1([H])CC3)[C@H](C)CCC=C(C)C	3428.4	Standard polar	33892256
4??-carboxy-4??-methyl-5??-cholesta-8,24-dien-3??-ol	[H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@](C)(C(O)=O)[C@]1([H])CC3)[C@H](C)CCC=C(C)C	3378.0	Standard non polar	33892256
4??-carboxy-4??-methyl-5??-cholesta-8,24-dien-3??-ol	[H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@](C)(C(O)=O)[C@]1([H])CC3)[C@H](C)CCC=C(C)C	3549.4	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
4??-carboxy-4??-methyl-5??-cholesta-8,24-dien-3??-ol,1TMS,isomer #1	CC(C)=CCC[C@@H](C)[C@H]1CC[C@H]2C3=C(CC[C@@]21C)[C@@]1(C)CC[C@H](O[Si](C)(C)C)[C@@](C)(C(=O)O)[C@@H]1CC3	3541.7	Semi standard non polar	33892256
4??-carboxy-4??-methyl-5??-cholesta-8,24-dien-3??-ol,1TMS,isomer #2	CC(C)=CCC[C@@H](C)[C@H]1CC[C@H]2C3=C(CC[C@@]21C)[C@@]1(C)CC[C@H](O)[C@@](C)(C(=O)O[Si](C)(C)C)[C@@H]1CC3	3492.0	Semi standard non polar	33892256
4??-carboxy-4??-methyl-5??-cholesta-8,24-dien-3??-ol,2TMS,isomer #1	CC(C)=CCC[C@@H](C)[C@H]1CC[C@H]2C3=C(CC[C@@]21C)[C@@]1(C)CC[C@H](O[Si](C)(C)C)[C@@](C)(C(=O)O[Si](C)(C)C)[C@@H]1CC3	3494.6	Semi standard non polar	33892256
4??-carboxy-4??-methyl-5??-cholesta-8,24-dien-3??-ol,1TBDMS,isomer #1	CC(C)=CCC[C@@H](C)[C@H]1CC[C@H]2C3=C(CC[C@@]21C)[C@@]1(C)CC[C@H](O[Si](C)(C)C(C)(C)C)[C@@](C)(C(=O)O)[C@@H]1CC3	3768.0	Semi standard non polar	33892256
4??-carboxy-4??-methyl-5??-cholesta-8,24-dien-3??-ol,1TBDMS,isomer #2	CC(C)=CCC[C@@H](C)[C@H]1CC[C@H]2C3=C(CC[C@@]21C)[C@@]1(C)CC[C@H](O)[C@@](C)(C(=O)O[Si](C)(C)C(C)(C)C)[C@@H]1CC3	3744.9	Semi standard non polar	33892256
4??-carboxy-4??-methyl-5??-cholesta-8,24-dien-3??-ol,2TBDMS,isomer #1	CC(C)=CCC[C@@H](C)[C@H]1CC[C@H]2C3=C(CC[C@@]21C)[C@@]1(C)CC[C@H](O[Si](C)(C)C(C)(C)C)[C@@](C)(C(=O)O[Si](C)(C)C(C)(C)C)[C@@H]1CC3	3988.3	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol GC-MS (Non-derivatized) - 70eV, Positive	splash10-03di-1009500000-659d37e4a554032db655	2017-09-20	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol GC-MS (2 TMS) - 70eV, Positive	splash10-00di-3001290000-49cf623a8c01d727af89	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol 10V, Positive-QTOF	splash10-004l-0003900000-f0c6600c4e9f4b0ebe5b	2016-09-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol 20V, Positive-QTOF	splash10-004i-1009500000-0b5ddc78f46f99358d6a	2016-09-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol 40V, Positive-QTOF	splash10-014r-3139200000-0ffe6baaea219aee2a61	2016-09-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol 10V, Negative-QTOF	splash10-0006-0004900000-3f078b450569105ded83	2016-09-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol 20V, Negative-QTOF	splash10-002e-0009500000-ec62c372df35c3083214	2016-09-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol 40V, Negative-QTOF	splash10-003r-1009200000-7f445ec03fa57924e2f5	2016-09-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol 10V, Negative-QTOF	splash10-0006-0000900000-a071385ec6b10bec9802	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol 20V, Negative-QTOF	splash10-0006-0007900000-a679f216bf445402e2f4	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol 40V, Negative-QTOF	splash10-014r-1009300000-0d8a0e3dbdcfdc36b405	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol 10V, Positive-QTOF	splash10-0006-0004900000-6ab84f25551330952892	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol 20V, Positive-QTOF	splash10-001r-7829500000-6c46f5c397c9c07c620d	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol 40V, Positive-QTOF	splash10-0apu-9448000000-f2eb3b928ee415bf05f9	2021-09-24	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

20059528

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

22298938

PDB ID

Not Available

ChEBI ID

50591

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for 4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol (HMDB0062383)

MOL for HMDB0062383 (4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol)

3D MOL for HMDB0062383 (4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol)

3D SDF for HMDB0062383 (4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol)

3D-SDF for HMDB0062383 (4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol)

PDB for HMDB0062383 (4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol)

3D PDB for HMDB0062383 (4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol)

SMILES for HMDB0062383 (4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol)

INCHI for HMDB0062383 (4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol)

Structure for HMDB0062383 (4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol)

3D Structure for HMDB0062383 (4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra