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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2017-08-02 20:48:47 UTC

Update Date

2022-03-07 03:18:03 UTC

HMDB ID

HMDB0094793

Secondary Accession Numbers

HMDB94793

Metabolite Identification

Common Name

3,6-octadienoylglycine

Description

2-[(1-hydroxyocta-3,6-dien-1-ylidene)amino]acetic acid belongs to the class of organic compounds known as n-acyl-alpha amino acids. N-acyl-alpha amino acids are compounds containing an alpha amino acid which bears an acyl group at its terminal nitrogen atom. 2-[(1-hydroxyocta-3,6-dien-1-ylidene)amino]acetic acid is a moderately basic compound (based on its pKa).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0094793
     RDKit          3D
3,6-octadienoylglycine
 29 28  0  0  0  0  0  0  0  0999 V2000
    4.8680   -0.0720   -0.3848 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1684   -0.4127    0.8667 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8643   -0.4938    0.9082 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0901   -0.2293   -0.3608 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2154    0.9073   -0.0745 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0768    0.8648   -0.1525 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9069   -0.2910   -0.5314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7947   -0.5800    0.6274 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1726   -0.8886    1.8303 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0553   -0.5364    0.4836 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6411   -0.2122   -0.7817 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1318   -0.3333   -0.6129 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8460   -0.0922   -1.6029 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7039   -0.6976    0.5899 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9780   -0.0246   -0.2284 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5822    0.9037   -0.8091 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6377   -0.8805   -1.1356 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7557   -0.5953    1.7547 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3092   -0.7468    1.8299 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5448   -1.1638   -0.5663 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8193   -0.0015   -1.1931 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6645    1.8798    0.2315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6631    1.7817    0.0849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3527   -1.2040   -0.7774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5446   -0.0138   -1.4338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7021   -0.7091    2.6721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3732    0.7916   -1.1661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3267   -0.9530   -1.5383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2061   -0.7051    1.4704 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  3
  3  4  1  0
  4  5  1  0
  5  6  2  3
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  2  3
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  3 19  1  0
  4 20  1  0
  4 21  1  0
  5 22  1  0
  6 23  1  0
  7 24  1  0
  7 25  1  0
  9 26  1  0
 11 27  1  0
 11 28  1  0
 14 29  1  0
M  END


  Mrv1652308021722482D          

 14 13  0  0  0  0            999 V2000
    3.7125   -2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3000   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2375   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500   -1.4289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  4  0  0  0
  3  2  2  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  2  0  0  0  0
  6  7  1  4  0  0  0
  9  7  1  0  0  0  0
 10  8  1  0  0  0  0
 11  8  1  4  0  0  0
 11  9  2  0  0  0  0
 12  9  1  0  0  0  0
 13 10  2  0  0  0  0
 14 10  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0094793

> <DATABASE_NAME>
hmdb

> <SMILES>
CC=CCC=CCC(O)=NCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C10H15NO3/c1-2-3-4-5-6-7-9(12)11-8-10(13)14/h2-3,5-6H,4,7-8H2,1H3,(H,11,12)(H,13,14)

> <INCHI_KEY>
ALNNZFFDANFOIM-UHFFFAOYSA-N

> <FORMULA>
C10H15NO3

> <MOLECULAR_WEIGHT>
197.234

> <EXACT_MASS>
197.105193347

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
29

> <JCHEM_AVERAGE_POLARIZABILITY>
20.60807013442382

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(1-hydroxyocta-3,6-dien-1-ylidene)amino]acetic acid

> <ALOGPS_LOGP>
1.89

> <JCHEM_LOGP>
1.6905110316666665

> <ALOGPS_LOGS>
-2.45

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
5.855896075562535

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.053990321534922

> <JCHEM_PKA_STRONGEST_BASIC>
1.9729645028508895

> <JCHEM_POLAR_SURFACE_AREA>
69.89

> <JCHEM_REFRACTIVITY>
55.83400000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.96e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(1-hydroxyocta-3,6-dien-1-ylidene)amino]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0094793
     RDKit          3D
3,6-octadienoylglycine
 29 28  0  0  0  0  0  0  0  0999 V2000
    4.8680   -0.0720   -0.3848 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1684   -0.4127    0.8667 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8643   -0.4938    0.9082 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0901   -0.2293   -0.3608 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2154    0.9073   -0.0745 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0768    0.8648   -0.1525 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9069   -0.2910   -0.5314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7947   -0.5800    0.6274 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1726   -0.8886    1.8303 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0553   -0.5364    0.4836 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6411   -0.2122   -0.7817 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1318   -0.3333   -0.6129 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8460   -0.0922   -1.6029 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7039   -0.6976    0.5899 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9780   -0.0246   -0.2284 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5822    0.9037   -0.8091 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6377   -0.8805   -1.1356 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7557   -0.5953    1.7547 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3092   -0.7468    1.8299 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5448   -1.1638   -0.5663 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8193   -0.0015   -1.1931 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6645    1.8798    0.2315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6631    1.7817    0.0849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3527   -1.2040   -0.7774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5446   -0.0138   -1.4338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7021   -0.7091    2.6721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3732    0.7916   -1.1661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3267   -0.9530   -1.5383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2061   -0.7051    1.4704 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  3
  3  4  1  0
  4  5  1  0
  5  6  2  3
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  2  3
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  3 19  1  0
  4 20  1  0
  4 21  1  0
  5 22  1  0
  6 23  1  0
  7 24  1  0
  7 25  1  0
  9 26  1  0
 11 27  1  0
 11 28  1  0
 14 29  1  0
M  END

HEADER    PROTEIN                                 02-AUG-17   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-AUG-17         0                                  
HETATM    1  C   UNK     0       6.930  -4.001   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.160  -2.667   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.930  -1.334   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.160   0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.620   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.850   1.334   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.770  -1.334   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.310  -1.334   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM   12  O   UNK     0       2.310  -1.334   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      -3.080  -2.667   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      -3.080   0.000   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    9                                                       
CONECT    8   10   11                                                       
CONECT    9    7   11   12                                                  
CONECT   10    8   13   14                                                  
CONECT   11    8    9                                                       
CONECT   12    9                                                            
CONECT   13   10                                                            
CONECT   14   10                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   26    0
END

COMPND    HMDB0094793
HETATM    1  C1  UNL     1       4.868  -0.072  -0.385  1.00  0.00           C  
HETATM    2  C2  UNL     1       4.168  -0.413   0.867  1.00  0.00           C  
HETATM    3  C3  UNL     1       2.864  -0.494   0.908  1.00  0.00           C  
HETATM    4  C4  UNL     1       2.090  -0.229  -0.361  1.00  0.00           C  
HETATM    5  C5  UNL     1       1.215   0.907  -0.074  1.00  0.00           C  
HETATM    6  C6  UNL     1      -0.077   0.865  -0.152  1.00  0.00           C  
HETATM    7  C7  UNL     1      -0.907  -0.291  -0.531  1.00  0.00           C  
HETATM    8  C8  UNL     1      -1.795  -0.580   0.627  1.00  0.00           C  
HETATM    9  O1  UNL     1      -1.173  -0.889   1.830  1.00  0.00           O  
HETATM   10  N1  UNL     1      -3.055  -0.536   0.484  1.00  0.00           N  
HETATM   11  C9  UNL     1      -3.641  -0.212  -0.782  1.00  0.00           C  
HETATM   12  C10 UNL     1      -5.132  -0.333  -0.613  1.00  0.00           C  
HETATM   13  O2  UNL     1      -5.846  -0.092  -1.603  1.00  0.00           O  
HETATM   14  O3  UNL     1      -5.704  -0.698   0.590  1.00  0.00           O  
HETATM   15  H1  UNL     1       5.978  -0.025  -0.228  1.00  0.00           H  
HETATM   16  H2  UNL     1       4.582   0.904  -0.809  1.00  0.00           H  
HETATM   17  H3  UNL     1       4.638  -0.881  -1.136  1.00  0.00           H  
HETATM   18  H4  UNL     1       4.756  -0.595   1.755  1.00  0.00           H  
HETATM   19  H5  UNL     1       2.309  -0.747   1.830  1.00  0.00           H  
HETATM   20  H6  UNL     1       1.545  -1.164  -0.566  1.00  0.00           H  
HETATM   21  H7  UNL     1       2.819  -0.002  -1.193  1.00  0.00           H  
HETATM   22  H8  UNL     1       1.665   1.880   0.232  1.00  0.00           H  
HETATM   23  H9  UNL     1      -0.663   1.782   0.085  1.00  0.00           H  
HETATM   24  H10 UNL     1      -0.353  -1.204  -0.777  1.00  0.00           H  
HETATM   25  H11 UNL     1      -1.545  -0.014  -1.434  1.00  0.00           H  
HETATM   26  H12 UNL     1      -1.702  -0.709   2.672  1.00  0.00           H  
HETATM   27  H13 UNL     1      -3.373   0.792  -1.166  1.00  0.00           H  
HETATM   28  H14 UNL     1      -3.327  -0.953  -1.538  1.00  0.00           H  
HETATM   29  H15 UNL     1      -5.206  -0.705   1.470  1.00  0.00           H  
CONECT    1    2   15   16   17
CONECT    2    3    3   18
CONECT    3    4   19
CONECT    4    5   20   21
CONECT    5    6    6   22
CONECT    6    7   23
CONECT    7    8   24   25
CONECT    8    9   10   10
CONECT    9   26
CONECT   10   11
CONECT   11   12   27   28
CONECT   12   13   13   14
CONECT   14   29
END

HMDB0094793
     RDKit          3D
3,6-octadienoylglycine
 29 28  0  0  0  0  0  0  0  0999 V2000
    4.8680   -0.0720   -0.3848 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1684   -0.4127    0.8667 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8643   -0.4938    0.9082 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0901   -0.2293   -0.3608 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2154    0.9073   -0.0745 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0768    0.8648   -0.1525 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9069   -0.2910   -0.5314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7947   -0.5800    0.6274 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1726   -0.8886    1.8303 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0553   -0.5364    0.4836 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6411   -0.2122   -0.7817 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1318   -0.3333   -0.6129 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8460   -0.0922   -1.6029 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7039   -0.6976    0.5899 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9780   -0.0246   -0.2284 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5822    0.9037   -0.8091 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6377   -0.8805   -1.1356 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7557   -0.5953    1.7547 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3092   -0.7468    1.8299 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5448   -1.1638   -0.5663 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8193   -0.0015   -1.1931 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6645    1.8798    0.2315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6631    1.7817    0.0849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3527   -1.2040   -0.7774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5446   -0.0138   -1.4338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7021   -0.7091    2.6721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3732    0.7916   -1.1661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3267   -0.9530   -1.5383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2061   -0.7051    1.4704 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  3
  3  4  1  0
  4  5  1  0
  5  6  2  3
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  2  3
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  3 19  1  0
  4 20  1  0
  4 21  1  0
  5 22  1  0
  6 23  1  0
  7 24  1  0
  7 25  1  0
  9 26  1  0
 11 27  1  0
 11 28  1  0
 14 29  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
2-[(1-Hydroxyocta-3,6-dien-1-ylidene)amino]acetate	Generator

Chemical Formula

C₁₀H₁₅NO₃

Average Molecular Weight

197.234

Monoisotopic Molecular Weight

197.105193347

IUPAC Name

2-[(1-hydroxyocta-3,6-dien-1-ylidene)amino]acetic acid

Traditional Name

[(1-hydroxyocta-3,6-dien-1-ylidene)amino]acetic acid

CAS Registry Number

Not Available

SMILES

CC=CCC=CCC(O)=NCC(O)=O

InChI Identifier

InChI=1S/C10H15NO3/c1-2-3-4-5-6-7-9(12)11-8-10(13)14/h2-3,5-6H,4,7-8H2,1H3,(H,11,12)(H,13,14)

InChI Key

ALNNZFFDANFOIM-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-acyl-alpha amino acids. N-acyl-alpha amino acids are compounds containing an alpha amino acid which bears an acyl group at its terminal nitrogen atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

N-acyl-alpha amino acids

Alternative Parents

Substituents

N-acyl-alpha-amino acid
Carboximidic acid
Carboximidic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carbonyl group
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Urine (PMID: 20971021)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	1.89	ALOGPS
logP	1.69	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	4.05	ChemAxon
pKa (Strongest Basic)	1.97	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	69.89 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	55.83 m³·mol⁻¹	ChemAxon
Polarizability	20.61 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	150.429	31661259
DarkChem	[M-H]-	147.373	31661259
DeepCCS	[M+H]+	141.559	30932474
DeepCCS	[M-H]-	137.73	30932474
DeepCCS	[M-2H]-	175.103	30932474
DeepCCS	[M+Na]+	150.749	30932474
AllCCS	[M+H]+	146.5	32859911
AllCCS	[M+H-H2O]+	142.7	32859911
AllCCS	[M+NH4]+	149.9	32859911
AllCCS	[M+Na]+	150.9	32859911
AllCCS	[M-H]-	146.4	32859911
AllCCS	[M+Na-2H]-	147.6	32859911
AllCCS	[M+HCOO]-	148.9	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
3,6-octadienoylglycine	CC=CCC=CCC(O)=NCC(O)=O	2869.4	Standard polar	33892256
3,6-octadienoylglycine	CC=CCC=CCC(O)=NCC(O)=O	1594.0	Standard non polar	33892256
3,6-octadienoylglycine	CC=CCC=CCC(O)=NCC(O)=O	1748.8	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
3,6-octadienoylglycine,1TMS,isomer #1	CC=CCC=CCC(=NCC(=O)O)O[Si](C)(C)C	1810.3	Semi standard non polar	33892256
3,6-octadienoylglycine,1TMS,isomer #2	CC=CCC=CCC(O)=NCC(=O)O[Si](C)(C)C	1737.9	Semi standard non polar	33892256
3,6-octadienoylglycine,2TMS,isomer #1	CC=CCC=CCC(=NCC(=O)O[Si](C)(C)C)O[Si](C)(C)C	1823.7	Semi standard non polar	33892256
3,6-octadienoylglycine,1TBDMS,isomer #1	CC=CCC=CCC(=NCC(=O)O)O[Si](C)(C)C(C)(C)C	2037.7	Semi standard non polar	33892256
3,6-octadienoylglycine,1TBDMS,isomer #2	CC=CCC=CCC(O)=NCC(=O)O[Si](C)(C)C(C)(C)C	1971.6	Semi standard non polar	33892256
3,6-octadienoylglycine,2TBDMS,isomer #1	CC=CCC=CCC(=NCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	2219.7	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 3,6-octadienoylglycine GC-MS (Non-derivatized) - 70eV, Positive	splash10-006y-9300000000-728dca198383ea61c96a	2017-09-14	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 3,6-octadienoylglycine GC-MS (2 TMS) - 70eV, Positive	splash10-0101-9121000000-117e84856f0706cc061b	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 3,6-octadienoylglycine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,6-octadienoylglycine 10V, Negative-QTOF	splash10-0002-0900000000-3565763169084779648c	2017-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,6-octadienoylglycine 20V, Negative-QTOF	splash10-00dj-3900000000-4df0d8481b3ab304c477	2017-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,6-octadienoylglycine 40V, Negative-QTOF	splash10-00dl-9100000000-13553c3db30eac18f18c	2017-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,6-octadienoylglycine 10V, Positive-QTOF	splash10-00dj-9600000000-a860eda452e6feab3cad	2017-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,6-octadienoylglycine 20V, Positive-QTOF	splash10-00fr-9100000000-11ec9ebb136c3efc9511	2017-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,6-octadienoylglycine 40V, Positive-QTOF	splash10-0adi-9000000000-951e895f6d63b5aa7661	2017-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,6-octadienoylglycine 10V, Negative-QTOF	splash10-00di-9300000000-0319912b76c9e5bcd1b4	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,6-octadienoylglycine 20V, Negative-QTOF	splash10-00di-9100000000-c036b9918fc5c66ab35b	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,6-octadienoylglycine 40V, Negative-QTOF	splash10-05fr-9000000000-ee7afc9d30a00e005d54	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,6-octadienoylglycine 10V, Positive-QTOF	splash10-0002-9600000000-f86c7ca9116bd861cb6f	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,6-octadienoylglycine 20V, Positive-QTOF	splash10-0pwm-9000000000-ad0593c32d10f99f29a7	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,6-octadienoylglycine 40V, Positive-QTOF	splash10-014i-9000000000-5b98a517bf25f38850eb	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Urine

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Urine	Detected but not Quantified	Not Quantified	Adult (24-38years old)	Not Specified	Normal	20971021	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Showing metabocard for 3,6-octadienoylglycine (HMDB0094793)

MOL for HMDB0094793 (3,6-octadienoylglycine)

3D MOL for HMDB0094793 (3,6-octadienoylglycine)

3D SDF for HMDB0094793 (3,6-octadienoylglycine)

3D-SDF for HMDB0094793 (3,6-octadienoylglycine)

PDB for HMDB0094793 (3,6-octadienoylglycine)

3D PDB for HMDB0094793 (3,6-octadienoylglycine)

SMILES for HMDB0094793 (3,6-octadienoylglycine)

INCHI for HMDB0094793 (3,6-octadienoylglycine)

Structure for HMDB0094793 (3,6-octadienoylglycine)

3D Structure for HMDB0094793 (3,6-octadienoylglycine)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra