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Record Information
Version5.0
StatusPredicted
Creation Date2017-08-25 06:17:14 UTC
Update Date2022-11-30 19:23:57 UTC
HMDB IDHMDB0111190
Secondary Accession NumbersNone
Metabolite Identification
Common NameCL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z))
DescriptionCL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) is a cardiolipin (CL). Cardiolipins are sometimes called a 'double' phospholipid because they have four fatty acid tails, instead of the usual two. CL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) contains two chains of (8Z-hexadecenoyl) at the C1 and C4 positions, one chain of (5Z,8Z,11Z,14Z-eicosatetraenoyl) at the C2 position, one chain of (9Z,12Z-octadecadienoyl) at the C3 position. While the theoretical charge of cardiolipins is -2, under normal physiological conditions (pH near 7), the molecule may carry only one negative charge. In prokaryotes such as E. coli, the enzyme known as diphosphatidylglycerol synthase catalyses the transfer of the phosphatidyl moiety of one phosphatidylglycerol to the free 3'-hydroxyl group of another, with the elimination of one molecule of glycerol. In E. coli, which acylates its glycerophospholipids with acyl chains ranging in length from 12 to 18 carbons and possibly containing an unsaturation, or a cyclopropane group more than 100 possible CL molecular species are theoretically possible, 53 of these species having been characterized. E. coli membranes consist of ~5% cardiolipin (CL), 20-25% phosphatidylglycerol (PG), and 70-80% phosphatidylethanolamine (PE) as well as smaller amounts of phosphatidylserine (PS). CL is distributed between the two leaflets of the bilayers and is located preferentially at the poles and septa in E. coli and other rod-shaped bacteria. It is known that the polar positioning of the proline transporter ProP and the mechanosensitive ion channel MscS in E. coli is dependent on CL. It is believed that cell shape may influence the localization of CL and the localization of certain membrane proteins.
Structure
Data?1574163975
Synonyms
ValueSource
[(2R)-2-Hydroxy-3-({hydroxy[(2R)-3-[(9Z,12Z)-octadeca-9,12-dienoyloxy]-2-{[(8Z)-16-oxohexadec-8-en-1-yl]oxy}propoxy]phosphoryl}oxy)propoxy][(2R)-2-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]-3-{[(8Z)-16-oxohexadec-8-en-1-yl]oxy}propoxy]phosphinateHMDB
Chemical FormulaC79H138O17P2
Average Molecular Weight1421.904
Monoisotopic Molecular Weight1420.94092698
IUPAC Name[(2R)-2-hydroxy-3-({hydroxy[(2R)-3-[(9Z,12Z)-octadeca-9,12-dienoyloxy]-2-{[(8Z)-16-oxohexadec-8-en-1-yl]oxy}propoxy]phosphoryl}oxy)propoxy][(2R)-2-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]-3-{[(8Z)-16-oxohexadec-8-en-1-yl]oxy}propoxy]phosphinic acid
Traditional Name(2R)-2-hydroxy-3-{[hydroxy((2R)-3-[(9Z,12Z)-octadeca-9,12-dienoyloxy]-2-{[(8Z)-16-oxohexadec-8-en-1-yl]oxy}propoxy)phosphoryl]oxy}propoxy((2R)-2-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]-3-{[(8Z)-16-oxohexadec-8-en-1-yl]oxy}propoxy)phosphinic acid
CAS Registry NumberNot Available
SMILES
[H][C@@](O)(COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCC\C=C/C\C=C/CCCCC)OCCCCCCC\C=C/CCCCCCC=O)COP(O)(=O)OC[C@@]([H])(COCCCCCCC\C=C/CCCCCCC=O)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC
InChI Identifier
InChI=1S/C79H138O17P2/c1-3-5-7-9-11-13-15-17-19-20-22-28-34-40-46-52-58-64-79(84)96-77(71-89-67-61-55-49-43-37-31-25-23-29-35-41-47-53-59-65-80)74-95-98(87,88)93-70-75(82)69-92-97(85,86)94-73-76(90-68-62-56-50-44-38-32-26-24-30-36-42-48-54-60-66-81)72-91-78(83)63-57-51-45-39-33-27-21-18-16-14-12-10-8-6-4-2/h11-14,17-19,21-26,28,40,46,65-66,75-77,82H,3-10,15-16,20,27,29-39,41-45,47-64,67-74H2,1-2H3,(H,85,86)(H,87,88)/b13-11-,14-12-,19-17-,21-18-,25-23-,26-24-,28-22-,46-40-/t75-,76-,77-/m1/s1
InChI KeySWRVOXSHBQFYTQ-PCQGRWGHSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as glycerophosphoglycerophosphoglycerols. These are glycerophospholipids that contain three glycerol moieties sequentially linked to each other with a phosphate group. They include cardiolipins.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphoglycerophosphoglycerols
Direct ParentGlycerophosphoglycerophosphoglycerols
Alternative Parents
Substituents
  • Glycerophosphoglycerophosphoglycerol
  • Fatty acid ester
  • Glycerol ether
  • Dialkyl phosphate
  • Dicarboxylic acid or derivatives
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Alpha-hydrogen aldehyde
  • Carboxylic acid ester
  • Secondary alcohol
  • Ether
  • Dialkyl ether
  • Carboxylic acid derivative
  • Organooxygen compound
  • Aldehyde
  • Organic oxygen compound
  • Alcohol
  • Organic oxide
  • Hydrocarbon derivative
  • Carbonyl group
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effect
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP9.11ALOGPS
logP21.29ChemAxon
logS-7.2ALOGPS
pKa (Strongest Acidic)1.59ChemAxon
pKa (Strongest Basic)-3.4ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count11ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area236.95 ŲChemAxon
Rotatable Bond Count78ChemAxon
Refractivity408.61 m³·mol⁻¹ChemAxon
Polarizability166.98 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+391.90730932474
DeepCCS[M-H]-389.14230932474
DeepCCS[M-2H]-423.71430932474
DeepCCS[M+Na]+399.08930932474

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022.1.11 minutes32390414
Predicted by Siyang on May 30, 202255.6603 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.01 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid9372.5 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid419.8 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid553.3 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid287.7 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid2009.0 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid3276.5 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid1793.1 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)398.9 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid5994.4 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid2037.0 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid4652.1 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid2359.7 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid1139.6 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate373.5 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA1180.2 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water14.9 seconds40023050

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) 10V, Negative-QTOFsplash10-0hk9-0492301010-8581fb5b7a82dc326c9b2017-09-14Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) 20V, Negative-QTOFsplash10-004i-8291103020-b0becc4cfdc8957f77492017-09-14Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) 40V, Negative-QTOFsplash10-004i-9050103000-e58d23acafd7a7d81db62017-09-14Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) 10V, Positive-QTOFsplash10-0uxr-0671940320-4498741df0215ef550eb2017-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) 20V, Positive-QTOFsplash10-0uy1-0590323140-417255059295163c50a42017-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) 40V, Positive-QTOFsplash10-00ks-0290140200-4dedbfedfd8cca1ecf212017-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) 10V, Negative-QTOFsplash10-014i-0001900030-48d6536f7e74e1a021bf2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) 20V, Negative-QTOFsplash10-0005-0381281090-d14ef22752587047df6a2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) 40V, Negative-QTOFsplash10-0f95-2012053090-355e25cef293c11800632021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) 10V, Positive-QTOFsplash10-0fka-5242930120-8e371f2c21a8fca6f9252021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) 20V, Positive-QTOFsplash10-0f6t-5033090840-387345ca2458cf465e3b2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(16:1(8Z)/20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z)/16:1(8Z)) 40V, Positive-QTOFsplash10-0a73-1396000080-6c799578353d370bff552021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound156908200
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
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  2. Lopez-Lopez A, Lopez-Sabater MC, Campoy-Folgoso C, Rivero-Urgell M, Castellote-Bargallo AI: Fatty acid and sn-2 fatty acid composition in human milk from Granada (Spain) and in infant formulas. Eur J Clin Nutr. 2002 Dec;56(12):1242-54. [PubMed:12494309 ]
  3. Jenkins B, West JA, Koulman A: A review of odd-chain fatty acid metabolism and the role of pentadecanoic Acid (c15:0) and heptadecanoic Acid (c17:0) in health and disease. Molecules. 2015 Jan 30;20(2):2425-44. doi: 10.3390/molecules20022425. [PubMed:25647578 ]
  4. Kingsbury KJ, Morgan DM: The analysis of the fatty acids of normal human depot fat by gas-liquid chromatography. Biochem J. 1964 Jan;90(1):140-7. [PubMed:5832283 ]
  5. Schlame M, Ren M, Xu Y, Greenberg ML, Haller I: Molecular symmetry in mitochondrial cardiolipins. Chem Phys Lipids. 2005 Dec;138(1-2):38-49. Epub 2005 Sep 7. [PubMed:16226238 ]
  6. Schlame M, Ren M: Barth syndrome, a human disorder of cardiolipin metabolism. FEBS Lett. 2006 Oct 9;580(23):5450-5. Epub 2006 Jul 17. [PubMed:16973164 ]
  7. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  8. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  9. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  10. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  11. Divecha N, Irvine RF: Phospholipid signaling. Cell. 1995 Jan 27;80(2):269-78. [PubMed:7834746 ]
  12. Hauff KD, Hatch GM: Cardiolipin metabolism and Barth Syndrome. Prog Lipid Res. 2006 Mar;45(2):91-101. Epub 2006 Jan 18. [PubMed:16442164 ]
  13. Cevc, Gregor (1993). Phospholipids Handbook. Marcel Dekker.
  14. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.