Hmdb loader
Record Information
Version5.0
StatusPredicted
Creation Date2017-08-25 07:54:37 UTC
Update Date2022-11-30 19:24:11 UTC
HMDB IDHMDB0111662
Secondary Accession NumbersNone
Metabolite Identification
Common NameCL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z))
DescriptionCL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) is a cardiolipin (CL). Cardiolipins are sometimes called a 'double' phospholipid because they have four fatty acid tails, instead of the usual two. CL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) contains one chain of (13Z-octadecenoyl) at the C1 position, three chains of (9Z,12Z-octadecadienoyl) at the C2, C3 and C4 positions. While the theoretical charge of cardiolipins is -2, under normal physiological conditions (pH near 7), the molecule may carry only one negative charge. In prokaryotes such as E. coli, the enzyme known as diphosphatidylglycerol synthase catalyses the transfer of the phosphatidyl moiety of one phosphatidylglycerol to the free 3'-hydroxyl group of another, with the elimination of one molecule of glycerol. In E. coli, which acylates its glycerophospholipids with acyl chains ranging in length from 12 to 18 carbons and possibly containing an unsaturation, or a cyclopropane group more than 100 possible CL molecular species are theoretically possible, 53 of these species having been characterized. E. coli membranes consist of ~5% cardiolipin (CL), 20-25% phosphatidylglycerol (PG), and 70-80% phosphatidylethanolamine (PE) as well as smaller amounts of phosphatidylserine (PS). CL is distributed between the two leaflets of the bilayers and is located preferentially at the poles and septa in E. coli and other rod-shaped bacteria. It is known that the polar positioning of the proline transporter ProP and the mechanosensitive ion channel MscS in E. coli is dependent on CL. It is believed that cell shape may influence the localization of CL and the localization of certain membrane proteins.
Structure
Data?1575061223
Synonyms
ValueSource
[(2R)-2,3-Bis[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy][(2S)-2-hydroxy-3-({hydroxy[(2R)-2-[(9Z,12Z)-octadeca-9,12-dienoyloxy]-3-{[(10Z)-18-oxooctadec-10-en-1-yl]oxy}propoxy]phosphoryl}oxy)propoxy]phosphinateGenerator
Chemical FormulaC81H144O17P2
Average Molecular Weight1451.974
Monoisotopic Molecular Weight1450.987877173
IUPAC Name[(2R)-2,3-bis[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy][(2S)-2-hydroxy-3-({hydroxy[(2R)-2-[(9Z,12Z)-octadeca-9,12-dienoyloxy]-3-{[(10Z)-18-oxooctadec-10-en-1-yl]oxy}propoxy]phosphoryl}oxy)propoxy]phosphinic acid
Traditional Name(2R)-2,3-bis[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy((2S)-2-hydroxy-3-{[hydroxy((2R)-2-[(9Z,12Z)-octadeca-9,12-dienoyloxy]-3-{[(10Z)-18-oxooctadec-10-en-1-yl]oxy}propoxy)phosphoryl]oxy}propoxy)phosphinic acid
CAS Registry NumberNot Available
SMILES
[H][C@](O)(COP(O)(=O)OC[C@@]([H])(COCCCCCCCCC\C=C/CCCCCCC=O)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC)COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCC\C=C/C\C=C/CCCCC)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC
InChI Identifier
InChI=1S/C81H144O17P2/c1-4-7-10-13-16-19-22-25-30-35-40-45-50-55-60-65-79(84)92-73-78(98-81(86)67-62-57-52-47-42-37-32-27-24-21-18-15-12-9-6-3)75-96-100(89,90)94-71-76(83)70-93-99(87,88)95-74-77(97-80(85)66-61-56-51-46-41-36-31-26-23-20-17-14-11-8-5-2)72-91-69-64-59-54-49-44-39-34-29-28-33-38-43-48-53-58-63-68-82/h16-21,25-28,30-33,68,76-78,83H,4-15,22-24,29,34-67,69-75H2,1-3H3,(H,87,88)(H,89,90)/b19-16-,20-17-,21-18-,30-25-,31-26-,32-27-,33-28-/t76-,77+,78+/m0/s1
InChI KeyLKYUEZGQFXVGGR-CFARZQPVSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as glycerophosphoglycerophosphoglycerols. These are glycerophospholipids that contain three glycerol moieties sequentially linked to each other with a phosphate group. They include cardiolipins.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphoglycerophosphoglycerols
Direct ParentGlycerophosphoglycerophosphoglycerols
Alternative Parents
Substituents
  • Glycerophosphoglycerophosphoglycerol
  • Tricarboxylic acid or derivatives
  • Fatty acid ester
  • Dialkyl phosphate
  • Glycerol ether
  • Fatty acyl
  • Alkyl phosphate
  • Phosphoric acid ester
  • Organic phosphoric acid derivative
  • Alpha-hydrogen aldehyde
  • Carboxylic acid ester
  • Secondary alcohol
  • Carboxylic acid derivative
  • Dialkyl ether
  • Ether
  • Aldehyde
  • Organic oxide
  • Alcohol
  • Carbonyl group
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effect
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP9.26ALOGPS
logP23.64ChemAxon
logS-7.3ALOGPS
pKa (Strongest Acidic)1.59ChemAxon
pKa (Strongest Basic)-3.4ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area236.95 ŲChemAxon
Rotatable Bond Count80ChemAxon
Refractivity415.71 m³·mol⁻¹ChemAxon
Polarizability170.85 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+368.76930932474
DeepCCS[M-H]-366.87330932474
DeepCCS[M-2H]-400.10930932474
DeepCCS[M+Na]+374.6330932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) 10V, Negative-QTOFsplash10-00ps-1890503130-d82915041efec83f33592017-09-14Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) 20V, Negative-QTOFsplash10-004i-9350213030-4f48137e86dd0ac27c7a2017-09-14Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) 40V, Negative-QTOFsplash10-004i-9050003000-a3c9c08574fe19793eb02017-09-14Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) 10V, Positive-QTOFsplash10-0ff0-0921723530-77a71fbc19e66356ace82017-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) 20V, Positive-QTOFsplash10-0fla-0953426360-0bba065e820c292fa4f82017-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) 40V, Positive-QTOFsplash10-0kms-1657367930-af06e734f3168f572ee42017-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) 10V, Positive-QTOFsplash10-0fy2-2305930010-7ad635759c55b26f8b7b2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) 20V, Positive-QTOFsplash10-0002-3314190310-e30dd62f65833d3805db2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) 40V, Positive-QTOFsplash10-0k92-0791050044-3466af70e528bb601bc72021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) 10V, Negative-QTOFsplash10-0002-0000900010-f3ce860d0510f2b47f002021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) 20V, Negative-QTOFsplash10-00y1-0940251060-447d9f6b6a750e6824da2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CL(18:1(8Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) 40V, Negative-QTOFsplash10-0002-1320000090-f831ae1e0faf4d51e7b92021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Quehenberger O, Armando AM, Brown AH, Milne SB, Myers DS, Merrill AH, Bandyopadhyay S, Jones KN, Kelly S, Shaner RL, Sullards CM, Wang E, Murphy RC, Barkley RM, Leiker TJ, Raetz CR, Guan Z, Laird GM, Six DA, Russell DW, McDonald JG, Subramaniam S, Fahy E, Dennis EA: Lipidomics reveals a remarkable diversity of lipids in human plasma. J Lipid Res. 2010 Nov;51(11):3299-305. doi: 10.1194/jlr.M009449. Epub 2010 Jul 29. [PubMed:20671299 ]
  2. Lopez-Lopez A, Lopez-Sabater MC, Campoy-Folgoso C, Rivero-Urgell M, Castellote-Bargallo AI: Fatty acid and sn-2 fatty acid composition in human milk from Granada (Spain) and in infant formulas. Eur J Clin Nutr. 2002 Dec;56(12):1242-54. [PubMed:12494309 ]
  3. Jenkins B, West JA, Koulman A: A review of odd-chain fatty acid metabolism and the role of pentadecanoic Acid (c15:0) and heptadecanoic Acid (c17:0) in health and disease. Molecules. 2015 Jan 30;20(2):2425-44. doi: 10.3390/molecules20022425. [PubMed:25647578 ]
  4. Kingsbury KJ, Morgan DM: The analysis of the fatty acids of normal human depot fat by gas-liquid chromatography. Biochem J. 1964 Jan;90(1):140-7. [PubMed:5832283 ]
  5. Schlame M, Ren M, Xu Y, Greenberg ML, Haller I: Molecular symmetry in mitochondrial cardiolipins. Chem Phys Lipids. 2005 Dec;138(1-2):38-49. Epub 2005 Sep 7. [PubMed:16226238 ]
  6. Schlame M, Ren M: Barth syndrome, a human disorder of cardiolipin metabolism. FEBS Lett. 2006 Oct 9;580(23):5450-5. Epub 2006 Jul 17. [PubMed:16973164 ]
  7. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  8. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  9. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  10. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  11. Divecha N, Irvine RF: Phospholipid signaling. Cell. 1995 Jan 27;80(2):269-78. [PubMed:7834746 ]
  12. Hauff KD, Hatch GM: Cardiolipin metabolism and Barth Syndrome. Prog Lipid Res. 2006 Mar;45(2):91-101. Epub 2006 Jan 18. [PubMed:16442164 ]
  13. Cevc, Gregor (1993). Phospholipids Handbook. Marcel Dekker.
  14. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.