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Showing metabocard for PS(20:3(5Z,8Z,11Z)/24:1(15Z)) (HMDB0112620)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-09-08 18:28:54 UTC
Update Date2022-11-30 19:24:37 UTC
HMDB IDHMDB0112620
Secondary Accession NumbersNone
Metabolite Identification
Common NamePS(20:3(5Z,8Z,11Z)/24:1(15Z))
DescriptionPS(20:3(5Z,8Z,11Z)/24:1(15Z)) is a phosphatidylserine. It is a glycerophospholipid in which a phosphorylserine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidylserines can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions. PS(20:3(5Z,8Z,11Z)/24:1(15Z)), in particular, consists of one chain of mead acid at the C-1 position and one chain of nervonic acid at the C-2 position. Phosphatidylserine or 1,2-diacyl-sn-glycero-3-phospho-L-serine is distributed widely among animals, plants, and microorganisms. Phosphatidylserine is an acidic (anionic) phospholipid with three ionizable groups (i.e. the phosphate moiety, the amino group and the carboxyl group). As with other acidic lipids, it exists in nature in salt form, but it has a high propensity to chelate calcium via the charged oxygen atoms of both the carboxyl and phosphate moieties, modifying the conformation of the polar head group. This interaction may be of considerable relevance to the biological function of phosphatidylserine. While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. Phosphatidylserines typically carry a net charge of -1 at physiological pH. They mostly have a palmitic or stearic acid on carbon 1 and a long chain unsaturated fatty acid (e.g. 18:2, 20:4 and 22:6) on carbon 2. PS biosynthesis involves an exchange reaction of serine for ethanolamine in PE.
Structure
Data?1563873275
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0112620 (PS(20:3(5Z,8Z,11Z)/24:1(15Z)))

PS(20:3(5Z,8Z,11Z)/24:1(15Z))
  Mrv1652309151723092D          

 64 63  0  0  1  0            999 V2000
   21.1276   -3.1272    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.2288   -4.1996    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5536   -4.5894    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.8784   -4.1996    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9038   -4.5894    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.2032   -4.5894    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.0267   -5.3690    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.5790   -4.1996    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   19.1892   -3.5244    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.9688   -4.8747    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.2541   -3.8098    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.9292   -4.1996    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.6043   -3.8098    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   18.1413   -5.3987    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   22.3005   -3.1966    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.0978   -3.6582    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.3005   -2.3518    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.1079   -4.4925    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   15.4888   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4888   -3.4055    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.7747   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0605   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   16.3122   -5.7815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  6  4  1  0  0  0  0
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 10  8  1  0  0  0  0
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 63 64  1  0  0  0  0
M  END
Download

3D MOL for HMDB0112620 (PS(20:3(5Z,8Z,11Z)/24:1(15Z)))

HMDB0112620
     RDKit          3D
PS(20:3(5Z,8Z,11Z)/24:1(15Z))
152151  0  0  0  0  0  0  0  0999 V2000
    0.2899   -2.7888   -4.3697 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7342   -3.0536   -3.9255 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6667   -2.2383   -4.7554 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1054   -2.3995   -4.4504 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5420   -2.0484   -3.0734 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2423   -0.6190   -2.7007 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7855   -0.3046   -1.3103 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5024    1.1194   -0.9243 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0697    1.4046   -0.8029 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3610    2.2345   -1.5195 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0312    3.0047   -2.6182 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2319    2.6002   -3.8400 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6409    3.4230   -4.6457 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6519    4.8534   -4.5242 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4859    5.6635   -4.3366 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7332    5.3862   -4.1300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3197    4.0314   -4.0013 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0498    4.0545   -2.6461 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7531    2.8001   -2.2667 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4975    3.0209   -0.9722 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5792    3.6826   -1.0024 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0938    2.5670    0.2398 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8719    2.8640    1.4312 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1382    2.2204    2.5784 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6984    2.7042    3.9188 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8971    2.1484    4.9117 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4279    2.6061    6.4505 P   0  0  0  0  0  5  0  0  0  0  0  0
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   -0.7643    1.7864    2.5995 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.6416    2.1505    2.5368 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3110    2.0197    3.9094 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7569    2.2770    3.6022 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7576    2.2142    4.6573 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8486    0.9979    5.5008 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8508   -0.3106    4.8263 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8278   -0.5870    3.7559 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9915   -5.0212    1.5402 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.1191   -6.0690    0.1719 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7000   -4.8135   -0.2411 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5768   -4.5147   -1.7423 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2502   -5.5518   -2.5491 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2131   -5.3653   -3.9992 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9003   -4.2814   -4.6975 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6022   -2.8658   -4.4100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4267   -1.9919   -5.3968 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9918   -2.3602   -6.7871 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4181   -3.3828   -3.7930 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1752   -3.0207   -5.4542 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0733   -1.7071   -4.2697 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9122   -4.1259   -4.1336 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8470   -2.8855   -2.8564 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4354   -1.1352   -4.6466 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5233   -2.4332   -5.8431 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4620   -3.4427   -4.6456 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6743   -1.7543   -5.1595 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6517   -2.1901   -3.0355 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0739   -2.7026   -2.2928 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1478   -0.4807   -2.7590 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7447    0.0871   -3.4054 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2518   -0.9917   -0.6188 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8591   -0.5432   -1.3191 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1223    1.8463   -1.4448 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8871    1.1787    0.1675 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5298    0.8475   -0.0195 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2887    2.3624   -1.3154 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0355    4.0665   -2.4294 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0353    2.6435   -2.7656 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1699    1.5044   -4.0283 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0112620 (PS(20:3(5Z,8Z,11Z)/24:1(15Z)))

PS(20:3(5Z,8Z,11Z)/24:1(15Z))
  Mrv1652309151723092D          

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M  END
> <DATABASE_ID>
HMDB0112620

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@](N)(COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)OC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C50H90NO10P/c1-3-5-7-9-11-13-15-17-19-21-22-23-24-26-28-30-32-34-36-38-40-42-49(53)61-46(44-59-62(56,57)60-45-47(51)50(54)55)43-58-48(52)41-39-37-35-33-31-29-27-25-20-18-16-14-12-10-8-6-4-2/h17-20,27,29,33,35,46-47H,3-16,21-26,28,30-32,34,36-45,51H2,1-2H3,(H,54,55)(H,56,57)/b19-17-,20-18-,29-27-,35-33-/t46-,47+/m1/s1

> <INCHI_KEY>
IXTXAXADQYRBSX-YSQZOPRESA-N

> <FORMULA>
C50H90NO10P

> <MOLECULAR_WEIGHT>
896.241

> <EXACT_MASS>
895.6302351

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
152

> <JCHEM_AVERAGE_POLARIZABILITY>
107.97253652245787

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-amino-3-({hydroxy[(2R)-3-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]-2-[(15Z)-tetracos-15-enoyloxy]propoxy]phosphoryl}oxy)propanoic acid

> <ALOGPS_LOGP>
5.91

> <JCHEM_LOGP>
13.380644118899381

> <ALOGPS_LOGS>
-7.25

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
2.178396015655375

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.4680339991784574

> <JCHEM_PKA_STRONGEST_BASIC>
9.376604467850063

> <JCHEM_POLAR_SURFACE_AREA>
171.68

> <JCHEM_REFRACTIVITY>
256.51220000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
48

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.02e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-amino-3-{[hydroxy((2R)-3-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]-2-[(15Z)-tetracos-15-enoyloxy]propoxy)phosphoryl]oxy}propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0112620 (PS(20:3(5Z,8Z,11Z)/24:1(15Z)))

HMDB0112620
     RDKit          3D
PS(20:3(5Z,8Z,11Z)/24:1(15Z))
152151  0  0  0  0  0  0  0  0999 V2000
    0.2899   -2.7888   -4.3697 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7342   -3.0536   -3.9255 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6667   -2.2383   -4.7554 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1054   -2.3995   -4.4504 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5420   -2.0484   -3.0734 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2423   -0.6190   -2.7007 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7855   -0.3046   -1.3103 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5024    1.1194   -0.9243 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0697    1.4046   -0.8029 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3610    2.2345   -1.5195 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0312    3.0047   -2.6182 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2319    2.6002   -3.8400 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6409    3.4230   -4.6457 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6519    4.8534   -4.5242 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4859    5.6635   -4.3366 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7332    5.3862   -4.1300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3197    4.0314   -4.0013 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0498    4.0545   -2.6461 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7531    2.8001   -2.2667 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4975    3.0209   -0.9722 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5792    3.6826   -1.0024 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0938    2.5670    0.2398 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8719    2.8640    1.4312 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1382    2.2204    2.5784 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6984    2.7042    3.9188 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8971    2.1484    4.9117 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4279    2.6061    6.4505 P   0  0  0  0  0  5  0  0  0  0  0  0
   -3.3696    4.0989    6.6330 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0160    2.0414    6.6066 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5004    1.8865    7.6609 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1634    0.7715    8.1563 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3704    0.0929    9.2570 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1246   -1.0572    9.7178 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1505    0.9917   10.4066 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5221    2.0573   10.2336 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6229    0.6765   11.6569 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7870    2.7224    2.5612 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7643    1.7864    2.5995 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1402    0.5679    2.6850 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6416    2.1505    2.5368 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3110    2.0197    3.9094 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7569    2.2770    3.6022 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7576    2.2142    4.6573 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8486    0.9979    5.5008 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8508   -0.3106    4.8263 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8278   -0.5870    3.7559 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6007   -2.0314    3.2338 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1547   -2.2197    2.9231 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9332   -3.6095    2.2895 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4276   -3.7643    2.1944 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9915   -5.0212    1.5402 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5529   -5.0356    1.7200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1514   -6.1925    1.0580 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1191   -6.0690    0.1719 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7000   -4.8135   -0.2411 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5768   -4.5147   -1.7423 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2502   -5.5518   -2.5491 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2131   -5.3653   -3.9992 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9003   -4.2814   -4.6975 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6022   -2.8658   -4.4100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4267   -1.9919   -5.3968 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9918   -2.3602   -6.7871 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4181   -3.3828   -3.7930 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1752   -3.0207   -5.4542 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0733   -1.7071   -4.2697 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9122   -4.1259   -4.1336 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8470   -2.8855   -2.8564 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4354   -1.1352   -4.6466 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5233   -2.4332   -5.8431 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4620   -3.4427   -4.6456 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6743   -1.7543   -5.1595 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6517   -2.1901   -3.0355 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0739   -2.7026   -2.2928 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1478   -0.4807   -2.7590 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7447    0.0871   -3.4054 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2518   -0.9917   -0.6188 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8591   -0.5432   -1.3191 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1223    1.8463   -1.4448 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8871    1.1787    0.1675 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5298    0.8475   -0.0195 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2887    2.3624   -1.3154 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0355    4.0665   -2.4294 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0353    2.6435   -2.7656 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1699    1.5044   -4.0283 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1074    2.9792   -5.5097 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5093    5.2209   -3.8574 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1334    5.2007   -5.5546 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7017    6.7945   -4.3850 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4985    6.2368   -4.0262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1367    3.9162   -4.7690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6624    3.1912   -4.0809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3024    4.2952   -1.8576 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7811    4.8974   -2.6320 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0548    1.9608   -2.1709 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5263    2.5068   -3.0072 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8873    3.9564    1.5959 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8936    2.4640    1.3164 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1641    1.1296    2.5751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7538    2.3525    4.0161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6574    3.8031    3.9011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9778    1.0566    6.5329 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3612    0.0559    7.3429 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1471    1.0532    8.6028 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3971   -0.2832    8.8765 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1005   -1.1083   10.7610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7175   -1.9367    9.3503 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1229    0.9086   12.5041 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2119    1.6027    1.7691 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7176    3.2539    2.2986 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9626    2.8346    4.5830 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0851    1.0778    4.4012 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0620    1.7664    2.6423 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7532    3.3765    3.2449 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5449    3.0704    5.3780 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7497    2.5060    4.2216 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8338    1.0795    6.0574 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0965    1.0324    6.3348 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9467   -1.0974    5.6369 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8306   -0.5473    4.3944 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8490   -0.4827    4.1367 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6579    0.0684    2.8901 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1933   -2.1764    2.3111 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8955   -2.7080    4.0403 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5891   -2.3272    3.9152 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7028   -1.4726    2.2692 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4251   -4.3800    2.8937 H   0  0  0  0  0  0  0  0  0  0  0  0
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 56 57  1  0
 57 58  1  0
 58 59  1  0
 59 60  1  0
 60 61  1  0
 61 62  1  0
  1 63  1  0
  1 64  1  0
  1 65  1  0
  2 66  1  0
  2 67  1  0
  3 68  1  0
  3 69  1  0
  4 70  1  0
  4 71  1  0
  5 72  1  0
  5 73  1  0
  6 74  1  0
  6 75  1  0
  7 76  1  0
  7 77  1  0
  8 78  1  0
  8 79  1  0
  9 80  1  0
 10 81  1  0
 11 82  1  0
 11 83  1  0
 12 84  1  0
 13 85  1  0
 14 86  1  0
 14 87  1  0
 15 88  1  0
 16 89  1  0
 17 90  1  0
 17 91  1  0
 18 92  1  0
 18 93  1  0
 19 94  1  0
 19 95  1  0
 23 96  1  0
 23 97  1  0
 24 98  1  6
 25 99  1  0
 25100  1  0
 29101  1  0
 31102  1  0
 31103  1  0
 32104  1  6
 33105  1  0
 33106  1  0
 36107  1  0
 40108  1  0
 40109  1  0
 41110  1  0
 41111  1  0
 42112  1  0
 42113  1  0
 43114  1  0
 43115  1  0
 44116  1  0
 44117  1  0
 45118  1  0
 45119  1  0
 46120  1  0
 46121  1  0
 47122  1  0
 47123  1  0
 48124  1  0
 48125  1  0
 49126  1  0
 49127  1  0
 50128  1  0
 50129  1  0
 51130  1  0
 51131  1  0
 52132  1  0
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 53134  1  0
 54135  1  0
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 55137  1  0
 56138  1  0
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 57141  1  0
 58142  1  0
 58143  1  0
 59144  1  0
 59145  1  0
 60146  1  0
 60147  1  0
 61148  1  0
 61149  1  0
 62150  1  0
 62151  1  0
 62152  1  0
M  END
Download

PDB for HMDB0112620 (PS(20:3(5Z,8Z,11Z)/24:1(15Z)))

HEADER    PROTEIN                                 15-SEP-17   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: PS(20:3(5Z,8Z,11Z)/24:1(15Z))                     
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-SEP-17         0                                  
HETATM    1  H   UNK     0      39.438  -5.837   0.000  0.00  0.00           H+0
HETATM    2  C   UNK     0      34.027  -7.839   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      32.767  -8.567   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      31.506  -7.839   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      35.287  -8.567   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      30.246  -8.567   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0      31.783 -10.022   0.000  0.00  0.00           O+0
HETATM    8  P   UNK     0      36.547  -7.839   0.000  0.00  0.00           P+0
HETATM    9  O   UNK     0      35.820  -6.579   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      37.275  -9.100   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      37.808  -7.112   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      39.068  -7.839   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      40.328  -7.112   0.000  0.00  0.00           C+0
HETATM   14  H   UNK     0      33.864 -10.078   0.000  0.00  0.00           H+0
HETATM   15  C   UNK     0      41.628  -5.967   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      43.116  -6.829   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      41.628  -4.390   0.000  0.00  0.00           O+0
HETATM   18  N   UNK     0      41.268  -8.386   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0      28.912  -7.797   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      28.912  -6.357   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      27.579  -8.568   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      26.246  -7.797   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      24.913  -8.568   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      23.580  -7.797   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      22.040  -7.797   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      20.707  -8.568   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      19.374  -7.797   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      17.834  -7.797   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      16.501  -8.568   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      15.168  -7.797   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      13.628  -7.797   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      12.295  -8.568   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      10.962  -7.797   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       9.629  -8.568   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       8.296  -7.797   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       6.962  -8.568   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       5.629  -7.797   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       4.296  -8.568   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       2.963  -7.797   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      30.449 -10.792   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      30.449 -12.232   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      29.116 -10.021   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      27.783 -10.792   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      26.450 -10.021   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      25.117 -10.792   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      23.784 -10.021   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      22.451 -10.792   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      21.118 -10.021   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      19.785 -10.792   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      18.452 -10.021   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      17.119 -10.792   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      15.786 -10.021   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      14.453 -10.792   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      13.120 -10.021   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      11.787 -10.792   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      10.247 -10.792   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0       8.914 -10.021   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0       7.580 -10.792   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0       6.247 -10.021   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0       4.914 -10.792   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0       3.581 -10.021   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0       2.248 -10.792   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0       0.915 -10.021   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0      -0.418 -10.792   0.000  0.00  0.00           C+0
CONECT    1   13                                                            
CONECT    2    3    5                                                       
CONECT    3    2    7   14    4                                             
CONECT    4    3    6                                                       
CONECT    5    2    8                                                       
CONECT    6    4   19                                                       
CONECT    7    3   40                                                       
CONECT    8    5    9   10   11                                             
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    8   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   15   18    1                                             
CONECT   14    3                                                            
CONECT   15   13   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18   13                                                            
CONECT   19    6   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38                                                            
CONECT   40    7   41   42                                                  
CONECT   41   40                                                            
CONECT   42   40   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62                                                       
CONECT   62   61   63                                                       
CONECT   63   62   64                                                       
CONECT   64   63                                                            
MASTER        0    0    0    0    0    0    0    0   64    0  126    0
END
Download

3D PDB for HMDB0112620 (PS(20:3(5Z,8Z,11Z)/24:1(15Z)))

COMPND    HMDB0112620
HETATM    1  C1  UNL     1       0.290  -2.789  -4.370  1.00  0.00           C  
HETATM    2  C2  UNL     1       1.734  -3.054  -3.925  1.00  0.00           C  
HETATM    3  C3  UNL     1       2.667  -2.238  -4.755  1.00  0.00           C  
HETATM    4  C4  UNL     1       4.105  -2.400  -4.450  1.00  0.00           C  
HETATM    5  C5  UNL     1       4.542  -2.048  -3.073  1.00  0.00           C  
HETATM    6  C6  UNL     1       4.242  -0.619  -2.701  1.00  0.00           C  
HETATM    7  C7  UNL     1       4.785  -0.305  -1.310  1.00  0.00           C  
HETATM    8  C8  UNL     1       4.502   1.119  -0.924  1.00  0.00           C  
HETATM    9  C9  UNL     1       3.070   1.405  -0.803  1.00  0.00           C  
HETATM   10  C10 UNL     1       2.361   2.235  -1.519  1.00  0.00           C  
HETATM   11  C11 UNL     1       3.031   3.005  -2.618  1.00  0.00           C  
HETATM   12  C12 UNL     1       2.232   2.600  -3.840  1.00  0.00           C  
HETATM   13  C13 UNL     1       1.641   3.423  -4.646  1.00  0.00           C  
HETATM   14  C14 UNL     1       1.652   4.853  -4.524  1.00  0.00           C  
HETATM   15  C15 UNL     1       0.486   5.663  -4.337  1.00  0.00           C  
HETATM   16  C16 UNL     1      -0.733   5.386  -4.130  1.00  0.00           C  
HETATM   17  C17 UNL     1      -1.320   4.031  -4.001  1.00  0.00           C  
HETATM   18  C18 UNL     1      -2.050   4.054  -2.646  1.00  0.00           C  
HETATM   19  C19 UNL     1      -2.753   2.800  -2.267  1.00  0.00           C  
HETATM   20  C20 UNL     1      -3.498   3.021  -0.972  1.00  0.00           C  
HETATM   21  O1  UNL     1      -4.579   3.683  -1.002  1.00  0.00           O  
HETATM   22  O2  UNL     1      -3.094   2.567   0.240  1.00  0.00           O  
HETATM   23  C21 UNL     1      -3.872   2.864   1.431  1.00  0.00           C  
HETATM   24  C22 UNL     1      -3.138   2.220   2.578  1.00  0.00           C  
HETATM   25  C23 UNL     1      -3.698   2.704   3.919  1.00  0.00           C  
HETATM   26  O3  UNL     1      -2.897   2.148   4.912  1.00  0.00           O  
HETATM   27  P1  UNL     1      -3.428   2.606   6.451  1.00  0.00           P  
HETATM   28  O4  UNL     1      -3.370   4.099   6.633  1.00  0.00           O  
HETATM   29  O5  UNL     1      -5.016   2.041   6.607  1.00  0.00           O  
HETATM   30  O6  UNL     1      -2.500   1.887   7.661  1.00  0.00           O  
HETATM   31  C24 UNL     1      -3.163   0.771   8.156  1.00  0.00           C  
HETATM   32  C25 UNL     1      -2.370   0.093   9.257  1.00  0.00           C  
HETATM   33  N1  UNL     1      -3.125  -1.057   9.718  1.00  0.00           N  
HETATM   34  C26 UNL     1      -2.150   0.992  10.407  1.00  0.00           C  
HETATM   35  O7  UNL     1      -1.522   2.057  10.234  1.00  0.00           O  
HETATM   36  O8  UNL     1      -2.623   0.676  11.657  1.00  0.00           O  
HETATM   37  O9  UNL     1      -1.787   2.722   2.561  1.00  0.00           O  
HETATM   38  C27 UNL     1      -0.764   1.786   2.600  1.00  0.00           C  
HETATM   39  O10 UNL     1      -1.140   0.568   2.685  1.00  0.00           O  
HETATM   40  C28 UNL     1       0.642   2.151   2.537  1.00  0.00           C  
HETATM   41  C29 UNL     1       1.311   2.020   3.909  1.00  0.00           C  
HETATM   42  C30 UNL     1       2.757   2.277   3.602  1.00  0.00           C  
HETATM   43  C31 UNL     1       3.758   2.214   4.657  1.00  0.00           C  
HETATM   44  C32 UNL     1       3.849   0.998   5.501  1.00  0.00           C  
HETATM   45  C33 UNL     1       3.851  -0.311   4.826  1.00  0.00           C  
HETATM   46  C34 UNL     1       4.828  -0.587   3.756  1.00  0.00           C  
HETATM   47  C35 UNL     1       4.601  -2.031   3.234  1.00  0.00           C  
HETATM   48  C36 UNL     1       3.155  -2.220   2.923  1.00  0.00           C  
HETATM   49  C37 UNL     1       2.933  -3.609   2.289  1.00  0.00           C  
HETATM   50  C38 UNL     1       1.428  -3.764   2.194  1.00  0.00           C  
HETATM   51  C39 UNL     1       0.992  -5.021   1.540  1.00  0.00           C  
HETATM   52  C40 UNL     1      -0.553  -5.036   1.720  1.00  0.00           C  
HETATM   53  C41 UNL     1      -1.151  -6.193   1.058  1.00  0.00           C  
HETATM   54  C42 UNL     1      -2.119  -6.069   0.172  1.00  0.00           C  
HETATM   55  C43 UNL     1      -2.700  -4.814  -0.241  1.00  0.00           C  
HETATM   56  C44 UNL     1      -2.577  -4.515  -1.742  1.00  0.00           C  
HETATM   57  C45 UNL     1      -3.250  -5.552  -2.549  1.00  0.00           C  
HETATM   58  C46 UNL     1      -3.213  -5.365  -3.999  1.00  0.00           C  
HETATM   59  C47 UNL     1      -3.900  -4.281  -4.698  1.00  0.00           C  
HETATM   60  C48 UNL     1      -3.602  -2.866  -4.410  1.00  0.00           C  
HETATM   61  C49 UNL     1      -4.427  -1.992  -5.397  1.00  0.00           C  
HETATM   62  C50 UNL     1      -3.992  -2.360  -6.787  1.00  0.00           C  
HETATM   63  H1  UNL     1      -0.418  -3.383  -3.793  1.00  0.00           H  
HETATM   64  H2  UNL     1       0.175  -3.021  -5.454  1.00  0.00           H  
HETATM   65  H3  UNL     1       0.073  -1.707  -4.270  1.00  0.00           H  
HETATM   66  H4  UNL     1       1.912  -4.126  -4.134  1.00  0.00           H  
HETATM   67  H5  UNL     1       1.847  -2.885  -2.856  1.00  0.00           H  
HETATM   68  H6  UNL     1       2.435  -1.135  -4.647  1.00  0.00           H  
HETATM   69  H7  UNL     1       2.523  -2.433  -5.843  1.00  0.00           H  
HETATM   70  H8  UNL     1       4.462  -3.443  -4.646  1.00  0.00           H  
HETATM   71  H9  UNL     1       4.674  -1.754  -5.160  1.00  0.00           H  
HETATM   72  H10 UNL     1       5.652  -2.190  -3.036  1.00  0.00           H  
HETATM   73  H11 UNL     1       4.074  -2.703  -2.293  1.00  0.00           H  
HETATM   74  H12 UNL     1       3.148  -0.481  -2.759  1.00  0.00           H  
HETATM   75  H13 UNL     1       4.745   0.087  -3.405  1.00  0.00           H  
HETATM   76  H14 UNL     1       4.252  -0.992  -0.619  1.00  0.00           H  
HETATM   77  H15 UNL     1       5.859  -0.543  -1.319  1.00  0.00           H  
HETATM   78  H16 UNL     1       5.122   1.846  -1.445  1.00  0.00           H  
HETATM   79  H17 UNL     1       4.887   1.179   0.168  1.00  0.00           H  
HETATM   80  H18 UNL     1       2.530   0.848  -0.019  1.00  0.00           H  
HETATM   81  H19 UNL     1       1.289   2.362  -1.315  1.00  0.00           H  
HETATM   82  H20 UNL     1       3.036   4.067  -2.429  1.00  0.00           H  
HETATM   83  H21 UNL     1       4.035   2.644  -2.766  1.00  0.00           H  
HETATM   84  H22 UNL     1       2.170   1.504  -4.028  1.00  0.00           H  
HETATM   85  H23 UNL     1       1.107   2.979  -5.510  1.00  0.00           H  
HETATM   86  H24 UNL     1       2.509   5.221  -3.857  1.00  0.00           H  
HETATM   87  H25 UNL     1       2.133   5.201  -5.555  1.00  0.00           H  
HETATM   88  H26 UNL     1       0.702   6.795  -4.385  1.00  0.00           H  
HETATM   89  H27 UNL     1      -1.498   6.237  -4.026  1.00  0.00           H  
HETATM   90  H28 UNL     1      -2.137   3.916  -4.769  1.00  0.00           H  
HETATM   91  H29 UNL     1      -0.662   3.191  -4.081  1.00  0.00           H  
HETATM   92  H30 UNL     1      -1.302   4.295  -1.858  1.00  0.00           H  
HETATM   93  H31 UNL     1      -2.781   4.897  -2.632  1.00  0.00           H  
HETATM   94  H32 UNL     1      -2.055   1.961  -2.171  1.00  0.00           H  
HETATM   95  H33 UNL     1      -3.526   2.507  -3.007  1.00  0.00           H  
HETATM   96  H34 UNL     1      -3.887   3.956   1.596  1.00  0.00           H  
HETATM   97  H35 UNL     1      -4.894   2.464   1.316  1.00  0.00           H  
HETATM   98  H36 UNL     1      -3.164   1.130   2.575  1.00  0.00           H  
HETATM   99  H37 UNL     1      -4.754   2.352   4.016  1.00  0.00           H  
HETATM  100  H38 UNL     1      -3.657   3.803   3.901  1.00  0.00           H  
HETATM  101  H39 UNL     1      -4.978   1.057   6.533  1.00  0.00           H  
HETATM  102  H40 UNL     1      -3.361   0.056   7.343  1.00  0.00           H  
HETATM  103  H41 UNL     1      -4.147   1.053   8.603  1.00  0.00           H  
HETATM  104  H42 UNL     1      -1.397  -0.283   8.876  1.00  0.00           H  
HETATM  105  H43 UNL     1      -3.100  -1.108  10.761  1.00  0.00           H  
HETATM  106  H44 UNL     1      -2.717  -1.937   9.350  1.00  0.00           H  
HETATM  107  H45 UNL     1      -2.123   0.909  12.504  1.00  0.00           H  
HETATM  108  H46 UNL     1       1.212   1.603   1.769  1.00  0.00           H  
HETATM  109  H47 UNL     1       0.718   3.254   2.299  1.00  0.00           H  
HETATM  110  H48 UNL     1       0.963   2.835   4.583  1.00  0.00           H  
HETATM  111  H49 UNL     1       1.085   1.078   4.401  1.00  0.00           H  
HETATM  112  H50 UNL     1       3.062   1.766   2.642  1.00  0.00           H  
HETATM  113  H51 UNL     1       2.753   3.377   3.245  1.00  0.00           H  
HETATM  114  H52 UNL     1       3.545   3.070   5.378  1.00  0.00           H  
HETATM  115  H53 UNL     1       4.750   2.506   4.222  1.00  0.00           H  
HETATM  116  H54 UNL     1       4.834   1.080   6.057  1.00  0.00           H  
HETATM  117  H55 UNL     1       3.096   1.032   6.335  1.00  0.00           H  
HETATM  118  H56 UNL     1       3.947  -1.097   5.637  1.00  0.00           H  
HETATM  119  H57 UNL     1       2.831  -0.547   4.394  1.00  0.00           H  
HETATM  120  H58 UNL     1       5.849  -0.483   4.137  1.00  0.00           H  
HETATM  121  H59 UNL     1       4.658   0.068   2.890  1.00  0.00           H  
HETATM  122  H60 UNL     1       5.193  -2.176   2.311  1.00  0.00           H  
HETATM  123  H61 UNL     1       4.895  -2.708   4.040  1.00  0.00           H  
HETATM  124  H62 UNL     1       2.589  -2.327   3.915  1.00  0.00           H  
HETATM  125  H63 UNL     1       2.703  -1.473   2.269  1.00  0.00           H  
HETATM  126  H64 UNL     1       3.425  -4.380   2.894  1.00  0.00           H  
HETATM  127  H65 UNL     1       3.365  -3.594   1.275  1.00  0.00           H  
HETATM  128  H66 UNL     1       1.065  -2.863   1.653  1.00  0.00           H  
HETATM  129  H67 UNL     1       1.058  -3.768   3.246  1.00  0.00           H  
HETATM  130  H68 UNL     1       1.175  -5.056   0.450  1.00  0.00           H  
HETATM  131  H69 UNL     1       1.442  -5.881   2.064  1.00  0.00           H  
HETATM  132  H70 UNL     1      -0.764  -5.080   2.829  1.00  0.00           H  
HETATM  133  H71 UNL     1      -0.872  -4.066   1.345  1.00  0.00           H  
HETATM  134  H72 UNL     1      -0.772  -7.205   1.316  1.00  0.00           H  
HETATM  135  H73 UNL     1      -2.498  -7.009  -0.278  1.00  0.00           H  
HETATM  136  H74 UNL     1      -3.828  -4.883  -0.093  1.00  0.00           H  
HETATM  137  H75 UNL     1      -2.420  -3.906   0.279  1.00  0.00           H  
HETATM  138  H76 UNL     1      -1.489  -4.455  -1.985  1.00  0.00           H  
HETATM  139  H77 UNL     1      -2.997  -3.519  -1.865  1.00  0.00           H  
HETATM  140  H78 UNL     1      -2.880  -6.587  -2.263  1.00  0.00           H  
HETATM  141  H79 UNL     1      -4.347  -5.599  -2.252  1.00  0.00           H  
HETATM  142  H80 UNL     1      -3.526  -6.359  -4.498  1.00  0.00           H  
HETATM  143  H81 UNL     1      -2.105  -5.321  -4.344  1.00  0.00           H  
HETATM  144  H82 UNL     1      -5.035  -4.441  -4.611  1.00  0.00           H  
HETATM  145  H83 UNL     1      -3.718  -4.460  -5.819  1.00  0.00           H  
HETATM  146  H84 UNL     1      -2.552  -2.589  -4.505  1.00  0.00           H  
HETATM  147  H85 UNL     1      -4.033  -2.546  -3.429  1.00  0.00           H  
HETATM  148  H86 UNL     1      -5.495  -2.230  -5.282  1.00  0.00           H  
HETATM  149  H87 UNL     1      -4.162  -0.945  -5.197  1.00  0.00           H  
HETATM  150  H88 UNL     1      -4.203  -1.480  -7.440  1.00  0.00           H  
HETATM  151  H89 UNL     1      -2.896  -2.572  -6.864  1.00  0.00           H  
HETATM  152  H90 UNL     1      -4.566  -3.216  -7.172  1.00  0.00           H  
CONECT    1    2   63   64   65
CONECT    2    3   66   67
CONECT    3    4   68   69
CONECT    4    5   70   71
CONECT    5    6   72   73
CONECT    6    7   74   75
CONECT    7    8   76   77
CONECT    8    9   78   79
CONECT    9   10   10   80
CONECT   10   11   81
CONECT   11   12   82   83
CONECT   12   13   13   84
CONECT   13   14   85
CONECT   14   15   86   87
CONECT   15   16   16   88
CONECT   16   17   89
CONECT   17   18   90   91
CONECT   18   19   92   93
CONECT   19   20   94   95
CONECT   20   21   21   22
CONECT   22   23
CONECT   23   24   96   97
CONECT   24   25   37   98
CONECT   25   26   99  100
CONECT   26   27
CONECT   27   28   28   29   30
CONECT   29  101
CONECT   30   31
CONECT   31   32  102  103
CONECT   32   33   34  104
CONECT   33  105  106
CONECT   34   35   35   36
CONECT   36  107
CONECT   37   38
CONECT   38   39   39   40
CONECT   40   41  108  109
CONECT   41   42  110  111
CONECT   42   43  112  113
CONECT   43   44  114  115
CONECT   44   45  116  117
CONECT   45   46  118  119
CONECT   46   47  120  121
CONECT   47   48  122  123
CONECT   48   49  124  125
CONECT   49   50  126  127
CONECT   50   51  128  129
CONECT   51   52  130  131
CONECT   52   53  132  133
CONECT   53   54   54  134
CONECT   54   55  135
CONECT   55   56  136  137
CONECT   56   57  138  139
CONECT   57   58  140  141
CONECT   58   59  142  143
CONECT   59   60  144  145
CONECT   60   61  146  147
CONECT   61   62  148  149
CONECT   62  150  151  152
END
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SMILES for HMDB0112620 (PS(20:3(5Z,8Z,11Z)/24:1(15Z)))

[H][C@](N)(COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)OC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC)C(O)=O
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INCHI for HMDB0112620 (PS(20:3(5Z,8Z,11Z)/24:1(15Z)))

InChI=1S/C50H90NO10P/c1-3-5-7-9-11-13-15-17-19-21-22-23-24-26-28-30-32-34-36-38-40-42-49(53)61-46(44-59-62(56,57)60-45-47(51)50(54)55)43-58-48(52)41-39-37-35-33-31-29-27-25-20-18-16-14-12-10-8-6-4-2/h17-20,27,29,33,35,46-47H,3-16,21-26,28,30-32,34,36-45,51H2,1-2H3,(H,54,55)(H,56,57)/b19-17-,20-18-,29-27-,35-33-/t46-,47+/m1/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
1-meadoyl-2-nervonoyl-sn-glycero-3-phosphoserine SMPDB, HMDB
PS(20:3/24:1) SMPDB, HMDB
PS(20:3n9/24:1n9) SMPDB, HMDB
PS(20:3w9/24:1w9) SMPDB, HMDB
PS(44:4) SMPDB, HMDB
Pser(20:3(5Z,8Z,11Z)/24:1(15Z)) SMPDB, HMDB
Pser(20:3/24:1) SMPDB, HMDB
Pser(20:3n9/24:1n9) SMPDB, HMDB
Pser(20:3w9/24:1w9) SMPDB, HMDB
Pser(44:4) SMPDB, HMDB
Phosphatidylserine(20:3(5Z,8Z,11Z)/24:1(15Z)) SMPDB, HMDB
Phosphatidylserine(20:3/24:1) SMPDB, HMDB
Phosphatidylserine(20:3n9/24:1n9) SMPDB, HMDB
Phosphatidylserine(20:3w9/24:1w9) SMPDB, HMDB
Phosphatidylserine(44:4)SMPDB, HMDB
PS(20:3(5Z,8Z,11Z)/24:1(15Z))SMPDB
PSer(44:4)Lipid Annotator
PS(44:4)Lipid Annotator
PSer(20:3/24:1)Lipid Annotator
Phosphatidylserine(20:3/24:1)Lipid Annotator
1-meadoyl-2-nervonoyl-sn-glycero-3-phosphoserineLipid Annotator
1-(5Z,8Z,11Z-eicosatrienoyl)-2-(15Z-tetracosanoyl)-sn-glycero-3-phosphoserineLipid Annotator, HMDB
PS(20:3/24:1)Lipid Annotator
(2S)-2-amino-3-({hydroxy[(2R)-3-[(8Z,11Z)-icosa-5,8,11-trienoyloxy]-2-[(15Z)-tetracos-15-enoyloxy]propoxy]phosphoryl}oxy)propanoateGenerator, HMDB
Chemical FormulaC50H90NO10P
Average Molecular Weight896.241
Monoisotopic Molecular Weight895.6302351
IUPAC Name(2S)-2-amino-3-({hydroxy[(2R)-3-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]-2-[(15Z)-tetracos-15-enoyloxy]propoxy]phosphoryl}oxy)propanoic acid
Traditional Name(2S)-2-amino-3-{[hydroxy((2R)-3-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]-2-[(15Z)-tetracos-15-enoyloxy]propoxy)phosphoryl]oxy}propanoic acid
CAS Registry NumberNot Available
SMILES
[H][C@](N)(COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)OC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC)C(O)=O
InChI Identifier
InChI=1S/C50H90NO10P/c1-3-5-7-9-11-13-15-17-19-21-22-23-24-26-28-30-32-34-36-38-40-42-49(53)61-46(44-59-62(56,57)60-45-47(51)50(54)55)43-58-48(52)41-39-37-35-33-31-29-27-25-20-18-16-14-12-10-8-6-4-2/h17-20,27,29,33,35,46-47H,3-16,21-26,28,30-32,34,36-45,51H2,1-2H3,(H,54,55)(H,56,57)/b19-17-,20-18-,29-27-,35-33-/t46-,47+/m1/s1
InChI KeyIXTXAXADQYRBSX-YSQZOPRESA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phosphatidylserines. These are glycerophosphoserines in which two fatty acids are bonded to the glycerol moiety through ester linkages. As is the case with diacylglycerols, phosphatidylserines can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphoserines
Direct ParentPhosphatidylserines
Alternative Parents
Substituents
  • Diacyl-glycerol-3-phosphoserine
  • Alpha-amino acid
  • Alpha-amino acid or derivatives
  • L-alpha-amino acid
  • Tricarboxylic acid or derivatives
  • Phosphoethanolamine
  • Fatty acid ester
  • Dialkyl phosphate
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Amino acid
  • Amino acid or derivatives
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Carboxylic acid
  • Primary aliphatic amine
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Amine
  • Carbonyl group
  • Organic oxide
  • Primary amine
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Organooxygen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological location
Process
Naturally occurring process
Role
Biological role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP5.91ALOGPS
logP13.38ChemAxon
logS-7.2ALOGPS
pKa (Strongest Acidic)1.47ChemAxon
pKa (Strongest Basic)9.38ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area171.68 ŲChemAxon
Rotatable Bond Count48ChemAxon
Refractivity256.51 m³·mol⁻¹ChemAxon
Polarizability107.97 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+316.9430932474
DeepCCS[M-H]-314.81430932474
DeepCCS[M-2H]-348.0630932474
DeepCCS[M+Na]+322.85330932474
AllCCS[M+H]+309.632859911
AllCCS[M+H-H2O]+309.632859911
AllCCS[M+NH4]+309.532859911
AllCCS[M+Na]+309.432859911
AllCCS[M-H]-304.432859911
AllCCS[M+Na-2H]-311.432859911
AllCCS[M+HCOO]-319.132859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PS(20:3(5Z,8Z,11Z)/24:1(15Z))[H][C@](N)(COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)OC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC)C(O)=O5859.1Standard polar33892256
PS(20:3(5Z,8Z,11Z)/24:1(15Z))[H][C@](N)(COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)OC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC)C(O)=O5323.2Standard non polar33892256
PS(20:3(5Z,8Z,11Z)/24:1(15Z))[H][C@](N)(COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)OC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC)C(O)=O6320.2Semi standard non polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:3(5Z,8Z,11Z)/24:1(15Z)) 10V, Positive-QTOFsplash10-0159-0000000169-f3a6ec15f48c83c612df2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:3(5Z,8Z,11Z)/24:1(15Z)) 20V, Positive-QTOFsplash10-014i-0000000029-2c693035e28ac2deab022021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:3(5Z,8Z,11Z)/24:1(15Z)) 40V, Positive-QTOFsplash10-0a4i-0090000331-e5ca1e9e88bc4e82ff752021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:3(5Z,8Z,11Z)/24:1(15Z)) 10V, Negative-QTOFsplash10-0006-0000000090-2dcd44de0d80393645672021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:3(5Z,8Z,11Z)/24:1(15Z)) 20V, Negative-QTOFsplash10-0006-0000000090-82e0e2d64b495c32c5592021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:3(5Z,8Z,11Z)/24:1(15Z)) 40V, Negative-QTOFsplash10-0a4l-0007440090-2c11da135f9b5f1cfa802021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:3(5Z,8Z,11Z)/24:1(15Z)) 10V, Positive-QTOFsplash10-0002-0000000190-c726eeba0f870787bd6a2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:3(5Z,8Z,11Z)/24:1(15Z)) 20V, Positive-QTOFsplash10-03dj-0001141970-84072e8c4275b06403492021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:3(5Z,8Z,11Z)/24:1(15Z)) 40V, Positive-QTOFsplash10-03di-0001141930-3d6d95dd1817fe4847222021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:3(5Z,8Z,11Z)/24:1(15Z)) 10V, Positive-QTOFsplash10-0yvi-0000000999-36ec5baf84edd03e6c5d2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:3(5Z,8Z,11Z)/24:1(15Z)) 20V, Positive-QTOFsplash10-0yvo-0900000999-854c801a81d4e2a74b1b2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(20:3(5Z,8Z,11Z)/24:1(15Z)) 40V, Positive-QTOFsplash10-0yvo-0900000999-854c801a81d4e2a74b1b2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131819849
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available