| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2017-09-09 02:59:51 UTC |
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| Update Date | 2022-11-30 19:25:57 UTC |
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| HMDB ID | HMDB0114889 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | PA(18:0/22:2(13Z,16Z)) |
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| Description | PA(18:0/22:2(13Z,16Z)) is a phosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidic acids can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PA(18:0/22:2(13Z,16Z)), in particular, consists of one chain of stearic acid at the C-1 position and one chain of docosadienoic acid at the C-2 position. Phosphatidic acids are quite rare but are extremely important as intermediates in the biosynthesis of triacylglycerols and phospholipids. |
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| Structure | [H][C@@](COC(=O)CCCCCCCCCCCCCCCCC)(COP(O)(O)=O)OC(=O)CCCCCCCCCCC\C=C/C\C=C/CCCCC InChI=1S/C43H81O8P/c1-3-5-7-9-11-13-15-17-19-20-21-22-24-26-28-30-32-34-36-38-43(45)51-41(40-50-52(46,47)48)39-49-42(44)37-35-33-31-29-27-25-23-18-16-14-12-10-8-6-4-2/h11,13,17,19,41H,3-10,12,14-16,18,20-40H2,1-2H3,(H2,46,47,48)/b13-11-,19-17-/t41-/m1/s1 |
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| Synonyms | | Value | Source |
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| 1-Stearoyl-2-docosadienoyl-sn-glycero-3-phosphate | HMDB | | 1-Stearoyl-2-docosadienoyl-sn-phosphatidic acid | HMDB | | PA(18:0/22:2) | HMDB | | PA(18:0/22:2N6) | HMDB | | PA(18:0/22:2W6) | HMDB | | PA(40:2) | HMDB | | Phosphatidic acid(18:0/22:2(13Z,16Z)) | HMDB | | Phosphatidic acid(18:0/22:2) | HMDB | | Phosphatidic acid(18:0/22:2n6) | HMDB | | Phosphatidic acid(18:0/22:2W6) | HMDB | | Phosphatidic acid(40:2) | HMDB | | Phosphatidate(18:0/22:2(13Z,16Z)) | HMDB | | Phosphatidate(18:0/22:2) | HMDB | | Phosphatidate(18:0/22:2N6) | HMDB | | Phosphatidate(18:0/22:2W6) | HMDB | | Phosphatidate(40:2) | HMDB | | 1-stearoyl-2-docosadienoyl-sn-glycero-3-phosphate | SMPDB, HMDB | | 1-stearoyl-2-docosadienoyl-sn-phosphatidic acid | SMPDB, HMDB | | PA(18:0/22:2) | SMPDB, HMDB | | PA(18:0/22:2n6) | SMPDB, HMDB | | PA(18:0/22:2w6) | SMPDB, HMDB | | PA(40:2) | SMPDB, HMDB | | Phosphatidic acid(18:0/22:2(13Z,16Z)) | SMPDB, HMDB | | Phosphatidic acid(18:0/22:2) | SMPDB, HMDB | | Phosphatidic acid(18:0/22:2n6) | SMPDB, HMDB | | Phosphatidic acid(18:0/22:2w6) | SMPDB, HMDB | | Phosphatidic acid(40:2) | SMPDB, HMDB | | Phosphatidate(18:0/22:2(13Z,16Z)) | SMPDB, HMDB | | Phosphatidate(18:0/22:2) | SMPDB, HMDB | | Phosphatidate(18:0/22:2n6) | SMPDB, HMDB | | Phosphatidate(18:0/22:2w6) | SMPDB, HMDB | | PA(18:0/22:2(13Z,16Z)) | SMPDB |
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| Chemical Formula | C43H81O8P |
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| Average Molecular Weight | 757.087 |
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| Monoisotopic Molecular Weight | 756.566906566 |
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| IUPAC Name | [(2R)-2-[(13Z,16Z)-docosa-13,16-dienoyloxy]-3-(octadecanoyloxy)propoxy]phosphonic acid |
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| Traditional Name | (2R)-2-[(13Z,16Z)-docosa-13,16-dienoyloxy]-3-(octadecanoyloxy)propoxyphosphonic acid |
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| CAS Registry Number | Not Available |
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| SMILES | [H][C@@](COC(=O)CCCCCCCCCCCCCCCCC)(COP(O)(O)=O)OC(=O)CCCCCCCCCCC\C=C/C\C=C/CCCCC |
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| InChI Identifier | InChI=1S/C43H81O8P/c1-3-5-7-9-11-13-15-17-19-20-21-22-24-26-28-30-32-34-36-38-43(45)51-41(40-50-52(46,47)48)39-49-42(44)37-35-33-31-29-27-25-23-18-16-14-12-10-8-6-4-2/h11,13,17,19,41H,3-10,12,14-16,18,20-40H2,1-2H3,(H2,46,47,48)/b13-11-,19-17-/t41-/m1/s1 |
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| InChI Key | DUNDSZRUFUKRQH-JMMITYAOSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as 1,2-diacylglycerol-3-phosphates. These are glycerol-3-phosphates in which the glycerol moiety is bonded to two aliphatic chains through ester linkages. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Glycerophospholipids |
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| Sub Class | Glycerophosphates |
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| Direct Parent | 1,2-diacylglycerol-3-phosphates |
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| Alternative Parents | |
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| Substituents | - 1,2-diacylglycerol-3-phosphate
- Fatty acid ester
- Monoalkyl phosphate
- Dicarboxylic acid or derivatives
- Fatty acyl
- Alkyl phosphate
- Phosphoric acid ester
- Organic phosphoric acid derivative
- Carboxylic acid ester
- Carboxylic acid derivative
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organooxygen compound
- Aliphatic acyclic compound
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| Molecular Framework | Aliphatic acyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Naturally occurring processBiological processBiochemical pathwayMetabolic pathway- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/22:4(7Z,10Z,13Z,16Z)) (PathBank: SMP0066070)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/22:5(4Z,7Z,10Z,13Z,16Z)) (PathBank: SMP0066071)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0074825)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/24:0) (PathBank: SMP0074826)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/22:2(13Z,16Z)) (PathBank: SMP0090090)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/24:1(15Z)) (PathBank: SMP0090096)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/22:5(7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0074824)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/18:0) (PathBank: SMP0018647)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/20:0) (PathBank: SMP0018648)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/22:0) (PathBank: SMP0018649)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/14:1(9Z)) (PathBank: SMP0018651)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/16:1(9Z)) (PathBank: SMP0018652)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/18:1(11Z)) (PathBank: SMP0018653)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/18:1(9Z)) (PathBank: SMP0018654)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/20:1(11Z)) (PathBank: SMP0018655)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/20:3(5Z,8Z,11Z)) (PathBank: SMP0018656)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/22:1(13Z)) (PathBank: SMP0018657)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/18:2(9Z,12Z)) (PathBank: SMP0018659)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/18:3(6Z,9Z,12Z)) (PathBank: SMP0018660)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/20:4(5Z,8Z,11Z,14Z)) (PathBank: SMP0018661)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/18:3(9Z,12Z,15Z)) (PathBank: SMP0018665)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/18:4(6Z,9Z,12Z,15Z)) (PathBank: SMP0018666)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/20:4(8Z,11Z,14Z,17Z)) (PathBank: SMP0018667)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z)) (PathBank: SMP0018668)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/20:2(11Z,14Z)) (PathBank: SMP0033025)
- De Novo Triacylglycerol Biosynthesis TG(18:0/22:2(13Z,16Z)/20:3(8Z,11Z,14Z)) (PathBank: SMP0033026)
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| Role | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. | 8.52 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 39.2133 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 2.04 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 5515.3 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 672.0 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 398.5 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 295.3 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1161.4 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 1967.6 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1501.9 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 239.9 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 3956.0 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 1198.9 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 3116.6 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1508.4 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 788.9 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 749.4 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 908.5 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 10.4 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| PA(18:0/22:2(13Z,16Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\CCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 5362.7 | Semi standard non polar | 33892256 | | PA(18:0/22:2(13Z,16Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\CCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 4730.1 | Standard non polar | 33892256 | | PA(18:0/22:2(13Z,16Z)),1TMS,isomer #1 | CCCCC/C=C\C/C=C\CCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 6121.7 | Standard polar | 33892256 | | PA(18:0/22:2(13Z,16Z)),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\CCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 5591.0 | Semi standard non polar | 33892256 | | PA(18:0/22:2(13Z,16Z)),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\CCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 4811.5 | Standard non polar | 33892256 | | PA(18:0/22:2(13Z,16Z)),1TBDMS,isomer #1 | CCCCC/C=C\C/C=C\CCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 6102.7 | Standard polar | 33892256 |
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