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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2017-09-09 08:33:50 UTC

Update Date

2022-11-30 19:26:40 UTC

HMDB ID

HMDB0116578

Secondary Accession Numbers

None

Metabolite Identification

Common Name

PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))

Description

PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) is a phosphatidylglycerol - a glycerophospholipid in which a phosphoglycerol moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidylglycerols can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)), in particular, consists of one chain of mead acid at the C-1 position and one chain of linoleic acid at the C-2 position. Phosphatidylglycerol is present at a level of 1-2% in most animal tissues, but it can be the second most abundant phospholipid in lung surfactant (up to 11% of the total). It is well established that the concentration of phosphatidylglycerol increases during fetal development. Phosphatidylglycerol may be present in animal tissues merely as a precursor for cardiolipin synthesis.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))
  Mrv1652309181707362D          

 57 56  0  0  1  0            999 V2000
   14.0374  -24.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3624  -24.5493    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.6871  -24.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7126  -24.5493    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.0120  -24.5493    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8354  -25.3289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.3878  -24.1595    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   14.9979  -23.4844    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.7775  -24.8347    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0628  -23.7697    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.7379  -24.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4131  -23.7697    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   18.0883  -24.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9501  -25.3586    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.7261  -23.7330    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.9894  -23.0847    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.8011  -23.0847    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.2975  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2975  -23.3654    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5834  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8693  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1551  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4410  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6160  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9018  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1877  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3626  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6485  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9344  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1094  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3952  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6811  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9669  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2528  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4613  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1755  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8896  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6037  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1210  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1210  -26.5128    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4069  -25.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6928  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9786  -25.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2645  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5504  -25.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8362  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1221  -25.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4079  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5829  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8688  -25.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1546  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3296  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6155  -25.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9013  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1872  -25.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4730  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2411  -25.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  2  6  1  0  0  0  0
  2 14  1  1  0  0  0
  3  2  1  0  0  0  0
  4  1  1  0  0  0  0
  5  3  1  0  0  0  0
  5 18  1  0  0  0  0
  7  4  1  0  0  0  0
  8  7  2  0  0  0  0
  9  7  1  0  0  0  0
 10  7  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 12 16  1  6  0  0  0
 12 17  1  0  0  0  0
 13 12  1  0  0  0  0
 13 15  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 39  6  1  0  0  0  0
 39 40  2  0  0  0  0
 39 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  2  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  2  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
M  END

HMDB0116578
     RDKit          3D
PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))
132131  0  0  0  0  0  0  0  0999 V2000
   -6.8511    4.5005    1.1081 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3836    3.1867    0.6498 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3818    2.2066    1.8306 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8789    0.8897    1.3844 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8896   -0.1440    2.5347 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3899   -1.3760    1.8500 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7147   -2.4579    1.7748 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3426   -2.7344    2.3420 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5061   -4.0471    3.0743 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7893   -5.1192    2.6630 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8457   -5.0662    1.5422 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4740   -5.5672    1.7809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7612   -5.1523    3.0245 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3310   -5.7085    2.8732 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5264   -4.7619    1.9576 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1289   -3.5727    2.8073 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5550   -2.4431    2.1637 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3251   -1.5953    1.3278 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5371   -1.8059    1.1523 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2611   -0.4857    0.7248 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5174    0.4290   -0.0054 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0995    0.5979   -1.4188 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1363   -0.5496   -2.2014 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6180   -1.6813   -2.1036 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4992   -1.7718   -1.2272 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4203   -2.8380   -3.0230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5992   -2.5761   -4.0861 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1204   -1.4276   -4.9773 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1188   -1.8317   -5.6375 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2587   -1.2392   -5.5274 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5049   -0.0240   -4.6885 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9060    1.0759   -5.5851 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0387    1.6764   -5.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1846    1.5007   -4.6943 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2891    0.5640   -3.6050 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1278   -0.4985   -3.5301 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0367   -0.8106   -4.5969 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4990   -0.8040   -4.4173 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1590   -1.6987   -3.4679 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9181   -1.6143   -2.0254 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2879   -0.2832   -1.4068 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.5180    2.0119    0.2517 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4251    1.7414    0.7705 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.1806    0.4597    0.6227 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.1658   -4.1701    3.9080 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.0996   -0.2327   -3.8228 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4963    0.2870   -4.2823 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))
  Mrv1652309181707362D          

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M  END
> <DATABASE_ID>
HMDB0116578

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C44H77O10P/c1-3-5-7-9-11-13-15-17-19-20-22-23-25-27-29-31-33-35-43(47)51-39-42(40-53-55(49,50)52-38-41(46)37-45)54-44(48)36-34-32-30-28-26-24-21-18-16-14-12-10-8-6-4-2/h12,14,17-19,21-23,27,29,41-42,45-46H,3-11,13,15-16,20,24-26,28,30-40H2,1-2H3,(H,49,50)/b14-12-,19-17-,21-18-,23-22-,29-27-/t41-,42+/m0/s1

> <INCHI_KEY>
CZQKFNOANGDDNL-XMLDSRQTSA-N

> <FORMULA>
C44H77O10P

> <MOLECULAR_WEIGHT>
797.064

> <EXACT_MASS>
796.525435677

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
132

> <JCHEM_AVERAGE_POLARIZABILITY>
93.95705613709352

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2S)-2,3-dihydroxypropoxy][(2R)-3-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]-2-[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy]phosphinic acid

> <ALOGPS_LOGP>
8.23

> <JCHEM_LOGP>
11.794855226000001

> <ALOGPS_LOGS>
-7.00

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.641245576372423

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8907737771907023

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9689647678483633

> <JCHEM_POLAR_SURFACE_AREA>
148.82000000000002

> <JCHEM_REFRACTIVITY>
228.49790000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
41

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.96e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2,3-dihydroxypropoxy((2R)-3-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]-2-[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy)phosphinic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0116578
     RDKit          3D
PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))
132131  0  0  0  0  0  0  0  0999 V2000
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M  END

HEADER    PROTEIN                                 18-SEP-17   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))                  
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   18-SEP-17         0                                  
HETATM    1  C   UNK     0      26.203 -45.098   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      24.943 -45.825   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      23.683 -45.098   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      27.464 -45.825   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      22.422 -45.825   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      23.959 -47.281   0.000  0.00  0.00           O+0
HETATM    7  P   UNK     0      28.724 -45.098   0.000  0.00  0.00           P+0
HETATM    8  O   UNK     0      27.996 -43.837   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      29.451 -46.358   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      29.984 -44.370   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      31.244 -45.098   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      32.504 -44.370   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      33.765 -45.098   0.000  0.00  0.00           C+0
HETATM   14  H   UNK     0      26.040 -47.336   0.000  0.00  0.00           H+0
HETATM   15  O   UNK     0      34.955 -44.302   0.000  0.00  0.00           O+0
HETATM   16  H   UNK     0      33.580 -43.091   0.000  0.00  0.00           H+0
HETATM   17  O   UNK     0      31.362 -43.091   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      21.089 -45.055   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      21.089 -43.615   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      19.756 -45.827   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      18.423 -45.055   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      17.090 -45.827   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      15.756 -45.055   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      14.216 -45.055   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      12.883 -45.827   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      11.550 -45.055   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      10.010 -45.055   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       8.677 -45.827   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       7.344 -45.055   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       5.804 -45.055   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       4.471 -45.827   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.138 -45.055   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       1.805 -45.827   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       0.472 -45.055   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -0.861 -45.827   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -2.194 -45.055   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      -3.527 -45.827   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -4.860 -45.055   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      22.626 -48.051   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      22.626 -49.491   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      21.293 -47.279   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      19.960 -48.051   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      18.627 -47.279   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      17.294 -48.051   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      15.961 -47.279   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      14.628 -48.051   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      13.295 -47.279   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      11.961 -48.051   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      10.421 -48.051   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0       9.088 -47.279   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0       7.755 -48.051   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0       6.215 -48.051   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0       4.882 -47.279   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0       3.549 -48.051   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0       2.216 -47.279   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0       0.883 -48.051   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      -0.450 -47.279   0.000  0.00  0.00           C+0
CONECT    1    2    4                                                       
CONECT    2    1    6   14    3                                             
CONECT    3    2    5                                                       
CONECT    4    1    7                                                       
CONECT    5    3   18                                                       
CONECT    6    2   39                                                       
CONECT    7    4    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   16   17   13                                             
CONECT   13   12   15                                                       
CONECT   14    2                                                            
CONECT   15   13                                                            
CONECT   16   12                                                            
CONECT   17   12                                                            
CONECT   18    5   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37                                                            
CONECT   39    6   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56                                                            
MASTER        0    0    0    0    0    0    0    0   57    0  112    0
END

COMPND    HMDB0116578
HETATM    1  C1  UNL     1      -6.851   4.501   1.108  1.00  0.00           C  
HETATM    2  C2  UNL     1      -7.384   3.187   0.650  1.00  0.00           C  
HETATM    3  C3  UNL     1      -7.382   2.207   1.831  1.00  0.00           C  
HETATM    4  C4  UNL     1      -7.879   0.890   1.384  1.00  0.00           C  
HETATM    5  C5  UNL     1      -7.890  -0.144   2.535  1.00  0.00           C  
HETATM    6  C6  UNL     1      -8.390  -1.376   1.850  1.00  0.00           C  
HETATM    7  C7  UNL     1      -7.715  -2.458   1.775  1.00  0.00           C  
HETATM    8  C8  UNL     1      -6.343  -2.734   2.342  1.00  0.00           C  
HETATM    9  C9  UNL     1      -6.506  -4.047   3.074  1.00  0.00           C  
HETATM   10  C10 UNL     1      -5.789  -5.119   2.663  1.00  0.00           C  
HETATM   11  C11 UNL     1      -4.846  -5.066   1.542  1.00  0.00           C  
HETATM   12  C12 UNL     1      -3.474  -5.567   1.781  1.00  0.00           C  
HETATM   13  C13 UNL     1      -2.761  -5.152   3.025  1.00  0.00           C  
HETATM   14  C14 UNL     1      -1.331  -5.709   2.873  1.00  0.00           C  
HETATM   15  C15 UNL     1      -0.526  -4.762   1.958  1.00  0.00           C  
HETATM   16  C16 UNL     1      -0.129  -3.573   2.807  1.00  0.00           C  
HETATM   17  C17 UNL     1       0.555  -2.443   2.164  1.00  0.00           C  
HETATM   18  C18 UNL     1      -0.325  -1.595   1.328  1.00  0.00           C  
HETATM   19  O1  UNL     1      -1.537  -1.806   1.152  1.00  0.00           O  
HETATM   20  O2  UNL     1       0.261  -0.486   0.725  1.00  0.00           O  
HETATM   21  C19 UNL     1      -0.517   0.429  -0.005  1.00  0.00           C  
HETATM   22  C20 UNL     1      -0.100   0.598  -1.419  1.00  0.00           C  
HETATM   23  O3  UNL     1      -0.136  -0.550  -2.201  1.00  0.00           O  
HETATM   24  C21 UNL     1       0.618  -1.681  -2.104  1.00  0.00           C  
HETATM   25  O4  UNL     1       1.499  -1.772  -1.227  1.00  0.00           O  
HETATM   26  C22 UNL     1       0.420  -2.838  -3.023  1.00  0.00           C  
HETATM   27  C23 UNL     1      -0.599  -2.576  -4.086  1.00  0.00           C  
HETATM   28  C24 UNL     1      -0.120  -1.428  -4.977  1.00  0.00           C  
HETATM   29  C25 UNL     1       1.119  -1.832  -5.637  1.00  0.00           C  
HETATM   30  C26 UNL     1       2.259  -1.239  -5.527  1.00  0.00           C  
HETATM   31  C27 UNL     1       2.505  -0.024  -4.689  1.00  0.00           C  
HETATM   32  C28 UNL     1       2.906   1.076  -5.585  1.00  0.00           C  
HETATM   33  C29 UNL     1       4.039   1.676  -5.542  1.00  0.00           C  
HETATM   34  C30 UNL     1       5.185   1.501  -4.694  1.00  0.00           C  
HETATM   35  C31 UNL     1       5.289   0.564  -3.605  1.00  0.00           C  
HETATM   36  C32 UNL     1       6.128  -0.499  -3.530  1.00  0.00           C  
HETATM   37  C33 UNL     1       7.037  -0.811  -4.597  1.00  0.00           C  
HETATM   38  C34 UNL     1       8.499  -0.804  -4.417  1.00  0.00           C  
HETATM   39  C35 UNL     1       9.159  -1.699  -3.468  1.00  0.00           C  
HETATM   40  C36 UNL     1       8.918  -1.614  -2.025  1.00  0.00           C  
HETATM   41  C37 UNL     1       9.288  -0.283  -1.407  1.00  0.00           C  
HETATM   42  C38 UNL     1       8.984  -0.402   0.080  1.00  0.00           C  
HETATM   43  C39 UNL     1       9.324   0.888   0.804  1.00  0.00           C  
HETATM   44  C40 UNL     1       8.518   2.012   0.252  1.00  0.00           C  
HETATM   45  C41 UNL     1      -0.425   1.741   0.771  1.00  0.00           C  
HETATM   46  O5  UNL     1      -1.122   2.799   0.305  1.00  0.00           O  
HETATM   47  P1  UNL     1      -0.768   4.123   1.303  1.00  0.00           P  
HETATM   48  O6  UNL     1       0.362   3.675   2.244  1.00  0.00           O  
HETATM   49  O7  UNL     1      -0.218   5.422   0.352  1.00  0.00           O  
HETATM   50  O8  UNL     1      -2.017   4.663   2.246  1.00  0.00           O  
HETATM   51  C42 UNL     1      -2.023   4.055   3.501  1.00  0.00           C  
HETATM   52  C43 UNL     1      -3.079   4.558   4.432  1.00  0.00           C  
HETATM   53  O9  UNL     1      -2.948   5.922   4.716  1.00  0.00           O  
HETATM   54  C44 UNL     1      -4.492   4.296   3.967  1.00  0.00           C  
HETATM   55  O10 UNL     1      -5.368   4.650   5.017  1.00  0.00           O  
HETATM   56  H1  UNL     1      -7.101   5.261   0.306  1.00  0.00           H  
HETATM   57  H2  UNL     1      -7.239   4.824   2.078  1.00  0.00           H  
HETATM   58  H3  UNL     1      -5.730   4.485   1.110  1.00  0.00           H  
HETATM   59  H4  UNL     1      -6.706   2.728  -0.106  1.00  0.00           H  
HETATM   60  H5  UNL     1      -8.416   3.281   0.297  1.00  0.00           H  
HETATM   61  H6  UNL     1      -8.048   2.609   2.613  1.00  0.00           H  
HETATM   62  H7  UNL     1      -6.323   2.098   2.173  1.00  0.00           H  
HETATM   63  H8  UNL     1      -7.181   0.460   0.623  1.00  0.00           H  
HETATM   64  H9  UNL     1      -8.904   0.933   0.974  1.00  0.00           H  
HETATM   65  H10 UNL     1      -6.842  -0.234   2.824  1.00  0.00           H  
HETATM   66  H11 UNL     1      -8.510   0.179   3.370  1.00  0.00           H  
HETATM   67  H12 UNL     1      -9.405  -1.296   1.396  1.00  0.00           H  
HETATM   68  H13 UNL     1      -8.171  -3.325   1.228  1.00  0.00           H  
HETATM   69  H14 UNL     1      -5.570  -2.741   1.628  1.00  0.00           H  
HETATM   70  H15 UNL     1      -6.123  -1.953   3.126  1.00  0.00           H  
HETATM   71  H16 UNL     1      -7.166  -4.170   3.908  1.00  0.00           H  
HETATM   72  H17 UNL     1      -5.918  -6.076   3.189  1.00  0.00           H  
HETATM   73  H18 UNL     1      -4.880  -4.115   0.998  1.00  0.00           H  
HETATM   74  H19 UNL     1      -5.307  -5.827   0.764  1.00  0.00           H  
HETATM   75  H20 UNL     1      -3.486  -6.708   1.815  1.00  0.00           H  
HETATM   76  H21 UNL     1      -2.798  -5.381   0.895  1.00  0.00           H  
HETATM   77  H22 UNL     1      -2.787  -4.082   3.216  1.00  0.00           H  
HETATM   78  H23 UNL     1      -3.169  -5.685   3.907  1.00  0.00           H  
HETATM   79  H24 UNL     1      -0.869  -5.691   3.849  1.00  0.00           H  
HETATM   80  H25 UNL     1      -1.407  -6.706   2.464  1.00  0.00           H  
HETATM   81  H26 UNL     1       0.357  -5.313   1.635  1.00  0.00           H  
HETATM   82  H27 UNL     1      -1.094  -4.407   1.105  1.00  0.00           H  
HETATM   83  H28 UNL     1       0.595  -4.004   3.586  1.00  0.00           H  
HETATM   84  H29 UNL     1      -1.042  -3.256   3.392  1.00  0.00           H  
HETATM   85  H30 UNL     1       1.393  -2.864   1.512  1.00  0.00           H  
HETATM   86  H31 UNL     1       1.072  -1.788   2.935  1.00  0.00           H  
HETATM   87  H32 UNL     1      -1.572   0.107   0.036  1.00  0.00           H  
HETATM   88  H33 UNL     1      -0.635   1.435  -1.927  1.00  0.00           H  
HETATM   89  H34 UNL     1       0.978   0.946  -1.414  1.00  0.00           H  
HETATM   90  H35 UNL     1       0.134  -3.716  -2.390  1.00  0.00           H  
HETATM   91  H36 UNL     1       1.409  -3.079  -3.463  1.00  0.00           H  
HETATM   92  H37 UNL     1      -0.699  -3.450  -4.759  1.00  0.00           H  
HETATM   93  H38 UNL     1      -1.607  -2.379  -3.665  1.00  0.00           H  
HETATM   94  H39 UNL     1      -0.169  -0.467  -4.496  1.00  0.00           H  
HETATM   95  H40 UNL     1      -0.909  -1.463  -5.831  1.00  0.00           H  
HETATM   96  H41 UNL     1       1.071  -2.733  -6.296  1.00  0.00           H  
HETATM   97  H42 UNL     1       3.132  -1.631  -6.084  1.00  0.00           H  
HETATM   98  H43 UNL     1       3.100  -0.233  -3.823  1.00  0.00           H  
HETATM   99  H44 UNL     1       1.496   0.287  -4.282  1.00  0.00           H  
HETATM  100  H45 UNL     1       2.146   1.411  -6.364  1.00  0.00           H  
HETATM  101  H46 UNL     1       4.122   2.510  -6.342  1.00  0.00           H  
HETATM  102  H47 UNL     1       5.413   2.543  -4.179  1.00  0.00           H  
HETATM  103  H48 UNL     1       6.118   1.478  -5.358  1.00  0.00           H  
HETATM  104  H49 UNL     1       4.692   0.678  -2.663  1.00  0.00           H  
HETATM  105  H50 UNL     1       6.080  -1.108  -2.640  1.00  0.00           H  
HETATM  106  H51 UNL     1       6.830  -0.243  -5.555  1.00  0.00           H  
HETATM  107  H52 UNL     1       6.724  -1.893  -4.930  1.00  0.00           H  
HETATM  108  H53 UNL     1       8.923  -1.069  -5.449  1.00  0.00           H  
HETATM  109  H54 UNL     1       8.880   0.277  -4.331  1.00  0.00           H  
HETATM  110  H55 UNL     1      10.290  -1.573  -3.610  1.00  0.00           H  
HETATM  111  H56 UNL     1       9.008  -2.752  -3.818  1.00  0.00           H  
HETATM  112  H57 UNL     1       7.968  -1.931  -1.612  1.00  0.00           H  
HETATM  113  H58 UNL     1       9.665  -2.336  -1.533  1.00  0.00           H  
HETATM  114  H59 UNL     1      10.402  -0.111  -1.513  1.00  0.00           H  
HETATM  115  H60 UNL     1       8.692   0.566  -1.772  1.00  0.00           H  
HETATM  116  H61 UNL     1       9.557  -1.227   0.550  1.00  0.00           H  
HETATM  117  H62 UNL     1       7.914  -0.604   0.254  1.00  0.00           H  
HETATM  118  H63 UNL     1      10.419   1.086   0.809  1.00  0.00           H  
HETATM  119  H64 UNL     1       9.043   0.741   1.864  1.00  0.00           H  
HETATM  120  H65 UNL     1       8.153   2.665   1.083  1.00  0.00           H  
HETATM  121  H66 UNL     1       7.621   1.604  -0.266  1.00  0.00           H  
HETATM  122  H67 UNL     1       9.187   2.569  -0.456  1.00  0.00           H  
HETATM  123  H68 UNL     1       0.647   2.027   0.855  1.00  0.00           H  
HETATM  124  H69 UNL     1      -0.730   1.549   1.839  1.00  0.00           H  
HETATM  125  H70 UNL     1       0.689   5.659   0.687  1.00  0.00           H  
HETATM  126  H71 UNL     1      -2.220   2.961   3.319  1.00  0.00           H  
HETATM  127  H72 UNL     1      -1.052   4.163   4.021  1.00  0.00           H  
HETATM  128  H73 UNL     1      -2.952   3.996   5.404  1.00  0.00           H  
HETATM  129  H74 UNL     1      -3.861   6.255   4.948  1.00  0.00           H  
HETATM  130  H75 UNL     1      -4.742   5.025   3.141  1.00  0.00           H  
HETATM  131  H76 UNL     1      -4.686   3.268   3.679  1.00  0.00           H  
HETATM  132  H77 UNL     1      -6.254   4.896   4.623  1.00  0.00           H  
CONECT    1    2   56   57   58
CONECT    2    3   59   60
CONECT    3    4   61   62
CONECT    4    5   63   64
CONECT    5    6   65   66
CONECT    6    7    7   67
CONECT    7    8   68
CONECT    8    9   69   70
CONECT    9   10   10   71
CONECT   10   11   72
CONECT   11   12   73   74
CONECT   12   13   75   76
CONECT   13   14   77   78
CONECT   14   15   79   80
CONECT   15   16   81   82
CONECT   16   17   83   84
CONECT   17   18   85   86
CONECT   18   19   19   20
CONECT   20   21
CONECT   21   22   45   87
CONECT   22   23   88   89
CONECT   23   24
CONECT   24   25   25   26
CONECT   26   27   90   91
CONECT   27   28   92   93
CONECT   28   29   94   95
CONECT   29   30   30   96
CONECT   30   31   97
CONECT   31   32   98   99
CONECT   32   33   33  100
CONECT   33   34  101
CONECT   34   35  102  103
CONECT   35   36   36  104
CONECT   36   37  105
CONECT   37   38  106  107
CONECT   38   39  108  109
CONECT   39   40  110  111
CONECT   40   41  112  113
CONECT   41   42  114  115
CONECT   42   43  116  117
CONECT   43   44  118  119
CONECT   44  120  121  122
CONECT   45   46  123  124
CONECT   46   47
CONECT   47   48   48   49   50
CONECT   49  125
CONECT   50   51
CONECT   51   52  126  127
CONECT   52   53   54  128
CONECT   53  129
CONECT   54   55  130  131
CONECT   55  132
END

HMDB0116578
     RDKit          3D
PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))
132131  0  0  0  0  0  0  0  0999 V2000
   -6.8511    4.5005    1.1081 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3836    3.1867    0.6498 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3818    2.2066    1.8306 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8789    0.8897    1.3844 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8896   -0.1440    2.5347 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3899   -1.3760    1.8500 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7147   -2.4579    1.7748 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3426   -2.7344    2.3420 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5061   -4.0471    3.0743 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7893   -5.1192    2.6630 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8457   -5.0662    1.5422 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4740   -5.5672    1.7809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7612   -5.1523    3.0245 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3310   -5.7085    2.8732 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5264   -4.7619    1.9576 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1289   -3.5727    2.8073 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5550   -2.4431    2.1637 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3251   -1.5953    1.3278 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5371   -1.8059    1.1523 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2611   -0.4857    0.7248 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5174    0.4290   -0.0054 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0995    0.5979   -1.4188 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1363   -0.5496   -2.2014 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6180   -1.6813   -2.1036 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4992   -1.7718   -1.2272 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4203   -2.8380   -3.0230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5992   -2.5761   -4.0861 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1204   -1.4276   -4.9773 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1188   -1.8317   -5.6375 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2587   -1.2392   -5.5274 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5049   -0.0240   -4.6885 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9060    1.0759   -5.5851 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0387    1.6764   -5.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1846    1.5007   -4.6943 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2891    0.5640   -3.6050 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1278   -0.4985   -3.5301 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0367   -0.8106   -4.5969 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
1-meadoyl-2-linoleoyl-sn-glycero-3-phospho-(1'-glycerol)	SMPDB, HMDB
1-meadoyl-2-linoleoyl-sn-glycero-3-phosphoglycerol	SMPDB, HMDB
PG(20:3/18:2)	SMPDB, HMDB
PG(20:3n9/18:2n6)	SMPDB, HMDB
PG(20:3w9/18:2w6)	SMPDB, HMDB
PG(38:5)	SMPDB, HMDB
Phosphatidylglycerol(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))	SMPDB, HMDB
Phosphatidylglycerol(20:3/18:2)	SMPDB, HMDB
Phosphatidylglycerol(20:3n9/18:2n6)	SMPDB, HMDB
Phosphatidylglycerol(20:3w9/18:2w6)	SMPDB, HMDB
Phosphatidylglycerol(38:5)	SMPDB, HMDB
PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))	SMPDB
PG(38:5)	Lipid Annotator
GPG(38:5)	Lipid Annotator, HMDB
Phosphatidylglycerol(20:3/18:2)	Lipid Annotator
PG(20:3/18:2)	Lipid Annotator
1-(5Z,8Z,11Z-eicosatrienoyl)-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phospho-(1'-glycerol)	Lipid Annotator, HMDB
GPG(20:3/18:2)	Lipid Annotator, HMDB
1-meadoyl-2-linoleoyl-sn-glycero-3-phosphoglycerol	Lipid Annotator
1-(5Z,8Z,11Z-eicosatrienoyl)-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphoglycerol	Lipid Annotator, HMDB
[(2S)-2,3-Dihydroxypropoxy][(2R)-3-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]-2-[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy]phosphinate	Generator, HMDB

Chemical Formula

C₄₄H₇₇O₁₀P

Average Molecular Weight

797.064

Monoisotopic Molecular Weight

796.525435677

IUPAC Name

[(2S)-2,3-dihydroxypropoxy][(2R)-3-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]-2-[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy]phosphinic acid

Traditional Name

(2S)-2,3-dihydroxypropoxy((2R)-3-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]-2-[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy)phosphinic acid

CAS Registry Number

Not Available

SMILES

[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC

InChI Identifier

InChI=1S/C44H77O10P/c1-3-5-7-9-11-13-15-17-19-20-22-23-25-27-29-31-33-35-43(47)51-39-42(40-53-55(49,50)52-38-41(46)37-45)54-44(48)36-34-32-30-28-26-24-21-18-16-14-12-10-8-6-4-2/h12,14,17-19,21-23,27,29,41-42,45-46H,3-11,13,15-16,20,24-26,28,30-40H2,1-2H3,(H,49,50)/b14-12-,19-17-,21-18-,23-22-,29-27-/t41-,42+/m0/s1

InChI Key

CZQKFNOANGDDNL-XMLDSRQTSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phosphatidylglycerols. These are glycerophosphoglycerols in which two fatty acids are bonded to the 1-glycerol moiety through ester linkages. As is the case with diacylglycerols, phosphatidylglycerols can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

Glycerophosphoglycerols

Direct Parent

Phosphatidylglycerols

Alternative Parents

Substituents

1,2-diacylglycerophosphoglycerol
Fatty acid ester
Dialkyl phosphate
Dicarboxylic acid or derivatives
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Fatty acyl
1,2-diol
Carboxylic acid ester
Secondary alcohol
Carboxylic acid derivative
Organic oxide
Organooxygen compound
Alcohol
Organic oxygen compound
Primary alcohol
Carbonyl group
Hydrocarbon derivative
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Not Available

Process

Naturally occurring process

Biological process

Biochemical pathway

Metabolic pathway

Cardiolipin Biosynthesis CL(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z)) (PathBank: SMP0029570)

Role

Not Available

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	8.23	ALOGPS
logP	11.79	ChemAxon
logS	-7	ALOGPS
pKa (Strongest Acidic)	1.89	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	148.82 Å²	ChemAxon
Rotatable Bond Count	41	ChemAxon
Refractivity	228.5 m³·mol⁻¹	ChemAxon
Polarizability	93.96 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	300.591	31661259
DarkChem	[M-H]-	286.932	31661259
DeepCCS	[M+H]+	279.19	30932474
DeepCCS	[M-H]-	277.083	30932474
DeepCCS	[M-2H]-	310.322	30932474
DeepCCS	[M+Na]+	285.102	30932474
AllCCS	[M+H]+	288.4	32859911
AllCCS	[M+H-H2O]+	288.4	32859911
AllCCS	[M+NH4]+	288.4	32859911
AllCCS	[M+Na]+	288.4	32859911
AllCCS	[M-H]-	277.6	32859911
AllCCS	[M+Na-2H]-	284.9	32859911
AllCCS	[M+HCOO]-	292.8	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))	[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC	5317.9	Standard polar	33892256
PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))	[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC	4730.3	Standard non polar	33892256
PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))	[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC	5610.4	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-10-19	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-10-19	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-10-19	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) 10V, Positive-QTOF	splash10-004i-3091141600-8d339ef464a58f29cd60	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) 20V, Positive-QTOF	splash10-06vi-4191121300-d15c61bb1174815ebf88	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) 40V, Positive-QTOF	splash10-0bvs-9085113200-cf03fc7f6ca940c6002a	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) 10V, Negative-QTOF	splash10-0a71-1195030500-0cb7cc92a3e1b3594ccc	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) 20V, Negative-QTOF	splash10-0a70-9488210200-a97f939270a8752d3dc0	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) 40V, Negative-QTOF	splash10-004i-9011000000-0636f61688db91aed46e	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) 10V, Negative-QTOF	splash10-0002-0000000900-9869f21529424c0a4adf	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) 20V, Negative-QTOF	splash10-0a6s-0199440900-59e314448c45dae8171e	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) 40V, Negative-QTOF	splash10-0a6s-0399440900-46868acea1c8e76b4362	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Name	SMPDB/PathBank	KEGG
Cardiolipin Biosynthesis CL(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)/18:2(9Z,12Z)/18:2(9Z,12Z))		Not Available

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

131823231

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Showing metabocard for PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)) (HMDB0116578)

MOL for HMDB0116578 (PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)))

3D MOL for HMDB0116578 (PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)))

3D SDF for HMDB0116578 (PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)))

3D-SDF for HMDB0116578 (PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)))

PDB for HMDB0116578 (PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)))

3D PDB for HMDB0116578 (PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)))

SMILES for HMDB0116578 (PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)))

INCHI for HMDB0116578 (PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)))

Structure for HMDB0116578 (PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)))

3D Structure for HMDB0116578 (PG(20:3(5Z,8Z,11Z)/18:2(9Z,12Z)))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra

MS/MS Spectra