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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2017-09-10 20:42:22 UTC

Update Date

2022-11-30 19:26:44 UTC

HMDB ID

HMDB0116744

Secondary Accession Numbers

None

Metabolite Identification

Common Name

PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))

Description

PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)) is a phosphatidylglycerol. Phosphatidylglycerols consist of a glycerol 3-phosphate backbone esterified to either saturated or unsaturated fatty acids on carbons 1 and 2. As is the case with diacylglycerols, phosphatidylglycerols can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions. PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)), in particular, consists of one 4Z,7Z,10Z,13Z,16Z-docosapentaenoyl chain to the C-1 atom, and one 5Z,8Z,11Z,14Z-eicosatetraenoyl to the C-2 atom. In E. coli glycerophospholipid metabolism, phosphatidylglycerol is formed from phosphatidic acid (1,2-diacyl-sn-glycerol 3-phosphate) by a sequence of enzymatic reactions that proceeds via two intermediates, cytidine diphosphate diacylglycerol (CDP-diacylglycerol) and phosphatidylglycerophosphate (PGP, a phosphorylated phosphatidylglycerol). Phosphatidylglycerols, along with CDP-diacylglycerol, also serve as precursor molecules for the synthesis of cardiolipin, a phospholipid found in membranes.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))
  Mrv1652309181707372D          

 61 60  0  0  1  0            999 V2000
   14.0374  -24.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3624  -24.5493    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.6871  -24.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7126  -24.5493    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.0120  -24.5493    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8354  -25.3289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.3878  -24.1595    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   14.9979  -23.4844    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.7775  -24.8347    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0628  -23.7697    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.7379  -24.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4131  -23.7697    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   18.0883  -24.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9501  -25.3586    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.7261  -23.7330    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.9894  -23.0847    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
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   11.2975  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2975  -23.3654    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5834  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.9018  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   12.1210  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.8911  -25.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  2  6  1  0  0  0  0
  2 14  1  1  0  0  0
  3  2  1  0  0  0  0
  4  1  1  0  0  0  0
  5  3  1  0  0  0  0
  5 18  1  0  0  0  0
  7  4  1  0  0  0  0
  8  7  2  0  0  0  0
  9  7  1  0  0  0  0
 10  7  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 12 16  1  6  0  0  0
 12 17  1  0  0  0  0
 13 12  1  0  0  0  0
 13 15  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
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 36 37  1  0  0  0  0
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 39 40  1  0  0  0  0
 41  6  1  0  0  0  0
 41 42  2  0  0  0  0
 41 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  2  0  0  0  0
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 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 60 61  1  0  0  0  0
M  END

HMDB0116744
     RDKit          3D
PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))
136135  0  0  0  0  0  0  0  0999 V2000
    2.3238    7.0147    1.9726 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3071    5.8979    2.1842 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0523    4.7644    2.8185 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0693    3.6169    3.0601 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9113    2.5198    3.6919 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0566    1.3593    3.9890 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2475    0.1721    3.4767 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3439   -0.1251    2.5373 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7897   -0.6606    1.2926 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9042   -0.0521    0.1369 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5753    1.2296   -0.1149 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6543    1.1580   -1.0838 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6710    1.7816   -2.2084 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6872    2.6640   -2.8018 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4144    2.9359   -2.2387 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2689    2.6748   -2.8695 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1323    2.1266   -4.1711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4369    0.8051   -4.3286 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5563    0.5166   -4.9233 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4564    1.5018   -5.5201 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9011    1.3042   -5.2093 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4268    1.1218   -3.9044 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7325    1.0095   -3.8227 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8099    1.0255   -2.6958 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5256    0.7608   -1.4688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3269    0.7066   -0.4023 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0230    2.1195   -0.0882 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.9445    5.4902   -1.8377 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.6481    7.4492   -2.3419 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5728    7.9322   -3.2398 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0570    8.6013   -1.6518 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.9647   -1.3661   -0.7814 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))
  Mrv1652309181707372D          

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M  END
> <DATABASE_ID>
HMDB0116744

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C48H77O10P/c1-3-5-7-9-11-13-15-17-19-21-22-24-25-27-29-31-33-35-37-39-47(51)55-43-46(44-57-59(53,54)56-42-45(50)41-49)58-48(52)40-38-36-34-32-30-28-26-23-20-18-16-14-12-10-8-6-4-2/h11-14,17-20,22,24,26-29,32-35,45-46,49-50H,3-10,15-16,21,23,25,30-31,36-44H2,1-2H3,(H,53,54)/b13-11-,14-12-,19-17-,20-18-,24-22-,28-26-,29-27-,34-32-,35-33-/t45-,46+/m0/s1

> <INCHI_KEY>
AWPISBXDIROAIJ-NSZVGEBUSA-N

> <FORMULA>
C48H77O10P

> <MOLECULAR_WEIGHT>
845.108

> <EXACT_MASS>
844.525435677

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
136

> <JCHEM_AVERAGE_POLARIZABILITY>
96.39447390339576

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2S)-2,3-dihydroxypropoxy][(2R)-3-[(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoyloxy]-2-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy]phosphinic acid

> <ALOGPS_LOGP>
7.90

> <JCHEM_LOGP>
12.125443259333338

> <ALOGPS_LOGS>
-6.98

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.641245576372423

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8907737771865571

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9689647678483633

> <JCHEM_POLAR_SURFACE_AREA>
148.82000000000002

> <JCHEM_REFRACTIVITY>
251.36830000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
41

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.75e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2,3-dihydroxypropoxy((2R)-3-[(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoyloxy]-2-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy)phosphinic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0116744
     RDKit          3D
PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))
136135  0  0  0  0  0  0  0  0999 V2000
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    2.0523    4.7644    2.8185 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0693    3.6169    3.0601 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 18-SEP-17   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))   
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   18-SEP-17         0                                  
HETATM    1  C   UNK     0      26.203 -45.098   0.000  0.00  0.00           C+0
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HETATM    5  O   UNK     0      22.422 -45.825   0.000  0.00  0.00           O+0
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HETATM   32  C   UNK     0       2.931 -45.827   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       1.598 -45.055   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       0.265 -45.827   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -1.275 -45.827   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -2.608 -45.055   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      -3.941 -45.827   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -5.274 -45.055   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -6.607 -45.827   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      -7.940 -45.055   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      22.626 -48.051   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      22.626 -49.491   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      21.293 -47.279   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      19.960 -48.051   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      18.627 -47.279   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      17.294 -48.051   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      15.754 -48.051   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      14.421 -47.279   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      13.088 -48.051   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      11.547 -48.051   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      10.214 -47.279   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0       8.881 -48.051   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0       7.341 -48.051   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0       6.008 -47.279   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0       4.675 -48.051   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0       3.135 -48.051   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0       1.802 -47.279   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0       0.469 -48.051   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      -0.864 -47.279   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      -2.197 -48.051   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0      -3.530 -47.279   0.000  0.00  0.00           C+0
CONECT    1    2    4                                                       
CONECT    2    1    6   14    3                                             
CONECT    3    2    5                                                       
CONECT    4    1    7                                                       
CONECT    5    3   18                                                       
CONECT    6    2   41                                                       
CONECT    7    4    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   16   17   13                                             
CONECT   13   12   15                                                       
CONECT   14    2                                                            
CONECT   15   13                                                            
CONECT   16   12                                                            
CONECT   17   12                                                            
CONECT   18    5   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39                                                            
CONECT   41    6   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60                                                            
MASTER        0    0    0    0    0    0    0    0   61    0  120    0
END

COMPND    HMDB0116744
HETATM    1  C1  UNL     1       2.324   7.015   1.973  1.00  0.00           C  
HETATM    2  C2  UNL     1       1.307   5.898   2.184  1.00  0.00           C  
HETATM    3  C3  UNL     1       2.052   4.764   2.818  1.00  0.00           C  
HETATM    4  C4  UNL     1       1.069   3.617   3.060  1.00  0.00           C  
HETATM    5  C5  UNL     1       1.911   2.520   3.692  1.00  0.00           C  
HETATM    6  C6  UNL     1       1.057   1.359   3.989  1.00  0.00           C  
HETATM    7  C7  UNL     1       1.247   0.172   3.477  1.00  0.00           C  
HETATM    8  C8  UNL     1       2.344  -0.125   2.537  1.00  0.00           C  
HETATM    9  C9  UNL     1       1.790  -0.661   1.293  1.00  0.00           C  
HETATM   10  C10 UNL     1       1.904  -0.052   0.137  1.00  0.00           C  
HETATM   11  C11 UNL     1       2.575   1.230  -0.115  1.00  0.00           C  
HETATM   12  C12 UNL     1       3.654   1.158  -1.084  1.00  0.00           C  
HETATM   13  C13 UNL     1       3.671   1.782  -2.208  1.00  0.00           C  
HETATM   14  C14 UNL     1       2.687   2.664  -2.802  1.00  0.00           C  
HETATM   15  C15 UNL     1       1.414   2.936  -2.239  1.00  0.00           C  
HETATM   16  C16 UNL     1       0.269   2.675  -2.869  1.00  0.00           C  
HETATM   17  C17 UNL     1       0.132   2.127  -4.171  1.00  0.00           C  
HETATM   18  C18 UNL     1      -0.437   0.805  -4.329  1.00  0.00           C  
HETATM   19  C19 UNL     1      -1.556   0.517  -4.923  1.00  0.00           C  
HETATM   20  C20 UNL     1      -2.456   1.502  -5.520  1.00  0.00           C  
HETATM   21  C21 UNL     1      -3.901   1.304  -5.209  1.00  0.00           C  
HETATM   22  C22 UNL     1      -4.427   1.122  -3.904  1.00  0.00           C  
HETATM   23  O1  UNL     1      -5.733   1.009  -3.823  1.00  0.00           O  
HETATM   24  O2  UNL     1      -3.810   1.026  -2.696  1.00  0.00           O  
HETATM   25  C23 UNL     1      -4.526   0.761  -1.469  1.00  0.00           C  
HETATM   26  C24 UNL     1      -3.327   0.707  -0.402  1.00  0.00           C  
HETATM   27  C25 UNL     1      -3.023   2.120  -0.088  1.00  0.00           C  
HETATM   28  O3  UNL     1      -2.930   2.982  -1.164  1.00  0.00           O  
HETATM   29  P1  UNL     1      -2.634   4.567  -0.613  1.00  0.00           P  
HETATM   30  O4  UNL     1      -3.877   5.222  -0.073  1.00  0.00           O  
HETATM   31  O5  UNL     1      -1.472   4.411   0.632  1.00  0.00           O  
HETATM   32  O6  UNL     1      -1.944   5.490  -1.838  1.00  0.00           O  
HETATM   33  C26 UNL     1      -1.305   6.577  -1.274  1.00  0.00           C  
HETATM   34  C27 UNL     1      -0.648   7.449  -2.342  1.00  0.00           C  
HETATM   35  O7  UNL     1      -1.573   7.932  -3.240  1.00  0.00           O  
HETATM   36  C28 UNL     1       0.057   8.601  -1.652  1.00  0.00           C  
HETATM   37  O8  UNL     1       0.980   8.061  -0.758  1.00  0.00           O  
HETATM   38  O9  UNL     1      -2.468  -0.120  -1.069  1.00  0.00           O  
HETATM   39  C29 UNL     1      -1.965  -1.366  -0.781  1.00  0.00           C  
HETATM   40  O10 UNL     1      -2.281  -1.869   0.313  1.00  0.00           O  
HETATM   41  C30 UNL     1      -1.099  -2.058  -1.754  1.00  0.00           C  
HETATM   42  C31 UNL     1      -0.380  -3.289  -1.304  1.00  0.00           C  
HETATM   43  C32 UNL     1       0.290  -3.879  -2.577  1.00  0.00           C  
HETATM   44  C33 UNL     1       1.087  -5.047  -2.281  1.00  0.00           C  
HETATM   45  C34 UNL     1       2.388  -5.244  -2.612  1.00  0.00           C  
HETATM   46  C35 UNL     1       3.113  -4.255  -3.326  1.00  0.00           C  
HETATM   47  C36 UNL     1       4.301  -3.571  -2.979  1.00  0.00           C  
HETATM   48  C37 UNL     1       5.088  -3.646  -1.982  1.00  0.00           C  
HETATM   49  C38 UNL     1       4.930  -4.557  -0.839  1.00  0.00           C  
HETATM   50  C39 UNL     1       4.854  -3.656   0.376  1.00  0.00           C  
HETATM   51  C40 UNL     1       3.875  -3.672   1.202  1.00  0.00           C  
HETATM   52  C41 UNL     1       2.670  -4.569   1.110  1.00  0.00           C  
HETATM   53  C42 UNL     1       2.584  -5.399   2.350  1.00  0.00           C  
HETATM   54  C43 UNL     1       1.516  -5.339   3.095  1.00  0.00           C  
HETATM   55  C44 UNL     1       0.311  -4.540   2.889  1.00  0.00           C  
HETATM   56  C45 UNL     1      -0.938  -5.437   2.786  1.00  0.00           C  
HETATM   57  C46 UNL     1      -1.116  -6.210   4.062  1.00  0.00           C  
HETATM   58  C47 UNL     1      -2.329  -7.117   4.042  1.00  0.00           C  
HETATM   59  C48 UNL     1      -2.225  -8.150   2.939  1.00  0.00           C  
HETATM   60  H1  UNL     1       3.046   7.028   2.808  1.00  0.00           H  
HETATM   61  H2  UNL     1       1.719   7.955   1.961  1.00  0.00           H  
HETATM   62  H3  UNL     1       2.831   6.848   1.016  1.00  0.00           H  
HETATM   63  H4  UNL     1       0.935   5.623   1.176  1.00  0.00           H  
HETATM   64  H5  UNL     1       0.463   6.192   2.808  1.00  0.00           H  
HETATM   65  H6  UNL     1       2.847   4.398   2.155  1.00  0.00           H  
HETATM   66  H7  UNL     1       2.480   5.045   3.808  1.00  0.00           H  
HETATM   67  H8  UNL     1       0.265   3.887   3.753  1.00  0.00           H  
HETATM   68  H9  UNL     1       0.683   3.328   2.083  1.00  0.00           H  
HETATM   69  H10 UNL     1       2.220   2.953   4.689  1.00  0.00           H  
HETATM   70  H11 UNL     1       2.814   2.335   3.132  1.00  0.00           H  
HETATM   71  H12 UNL     1       0.196   1.484   4.681  1.00  0.00           H  
HETATM   72  H13 UNL     1       0.573  -0.635   3.749  1.00  0.00           H  
HETATM   73  H14 UNL     1       3.163   0.568   2.488  1.00  0.00           H  
HETATM   74  H15 UNL     1       2.859  -1.064   3.020  1.00  0.00           H  
HETATM   75  H16 UNL     1       1.241  -1.620   1.365  1.00  0.00           H  
HETATM   76  H17 UNL     1       1.437  -0.587  -0.718  1.00  0.00           H  
HETATM   77  H18 UNL     1       1.901   2.067  -0.111  1.00  0.00           H  
HETATM   78  H19 UNL     1       3.158   1.415   0.895  1.00  0.00           H  
HETATM   79  H20 UNL     1       4.526   0.486  -0.788  1.00  0.00           H  
HETATM   80  H21 UNL     1       4.620   1.587  -2.820  1.00  0.00           H  
HETATM   81  H22 UNL     1       3.221   3.693  -3.035  1.00  0.00           H  
HETATM   82  H23 UNL     1       2.570   2.308  -3.882  1.00  0.00           H  
HETATM   83  H24 UNL     1       1.341   3.480  -1.260  1.00  0.00           H  
HETATM   84  H25 UNL     1      -0.661   2.924  -2.303  1.00  0.00           H  
HETATM   85  H26 UNL     1       1.048   2.245  -4.844  1.00  0.00           H  
HETATM   86  H27 UNL     1      -0.560   2.870  -4.744  1.00  0.00           H  
HETATM   87  H28 UNL     1       0.176  -0.035  -3.906  1.00  0.00           H  
HETATM   88  H29 UNL     1      -1.862  -0.546  -4.992  1.00  0.00           H  
HETATM   89  H30 UNL     1      -2.371   1.346  -6.651  1.00  0.00           H  
HETATM   90  H31 UNL     1      -2.220   2.564  -5.336  1.00  0.00           H  
HETATM   91  H32 UNL     1      -4.302   0.472  -5.889  1.00  0.00           H  
HETATM   92  H33 UNL     1      -4.418   2.212  -5.701  1.00  0.00           H  
HETATM   93  H34 UNL     1      -4.896  -0.255  -1.509  1.00  0.00           H  
HETATM   94  H35 UNL     1      -5.235   1.503  -1.190  1.00  0.00           H  
HETATM   95  H36 UNL     1      -3.774   0.260   0.521  1.00  0.00           H  
HETATM   96  H37 UNL     1      -2.080   2.134   0.523  1.00  0.00           H  
HETATM   97  H38 UNL     1      -3.790   2.580   0.603  1.00  0.00           H  
HETATM   98  H39 UNL     1      -0.733   3.856   0.226  1.00  0.00           H  
HETATM   99  H40 UNL     1      -2.040   7.227  -0.767  1.00  0.00           H  
HETATM  100  H41 UNL     1      -0.543   6.322  -0.540  1.00  0.00           H  
HETATM  101  H42 UNL     1       0.107   6.869  -2.904  1.00  0.00           H  
HETATM  102  H43 UNL     1      -1.830   7.157  -3.819  1.00  0.00           H  
HETATM  103  H44 UNL     1       0.637   9.182  -2.395  1.00  0.00           H  
HETATM  104  H45 UNL     1      -0.661   9.211  -1.064  1.00  0.00           H  
HETATM  105  H46 UNL     1       1.778   7.708  -1.230  1.00  0.00           H  
HETATM  106  H47 UNL     1      -0.346  -1.299  -2.112  1.00  0.00           H  
HETATM  107  H48 UNL     1      -1.751  -2.265  -2.652  1.00  0.00           H  
HETATM  108  H49 UNL     1       0.386  -3.081  -0.542  1.00  0.00           H  
HETATM  109  H50 UNL     1      -1.099  -4.033  -0.933  1.00  0.00           H  
HETATM  110  H51 UNL     1      -0.574  -4.137  -3.257  1.00  0.00           H  
HETATM  111  H52 UNL     1       0.778  -3.004  -3.013  1.00  0.00           H  
HETATM  112  H53 UNL     1       0.622  -5.884  -1.734  1.00  0.00           H  
HETATM  113  H54 UNL     1       2.825  -6.206  -2.334  1.00  0.00           H  
HETATM  114  H55 UNL     1       2.388  -3.482  -3.798  1.00  0.00           H  
HETATM  115  H56 UNL     1       3.366  -4.806  -4.355  1.00  0.00           H  
HETATM  116  H57 UNL     1       4.625  -2.781  -3.770  1.00  0.00           H  
HETATM  117  H58 UNL     1       5.995  -2.949  -1.973  1.00  0.00           H  
HETATM  118  H59 UNL     1       5.921  -5.111  -0.649  1.00  0.00           H  
HETATM  119  H60 UNL     1       4.103  -5.216  -0.813  1.00  0.00           H  
HETATM  120  H61 UNL     1       5.693  -2.950   0.555  1.00  0.00           H  
HETATM  121  H62 UNL     1       3.926  -2.960   2.058  1.00  0.00           H  
HETATM  122  H63 UNL     1       2.581  -5.152   0.211  1.00  0.00           H  
HETATM  123  H64 UNL     1       1.820  -3.861   1.124  1.00  0.00           H  
HETATM  124  H65 UNL     1       3.435  -6.025   2.572  1.00  0.00           H  
HETATM  125  H66 UNL     1       1.528  -5.967   3.997  1.00  0.00           H  
HETATM  126  H67 UNL     1       0.247  -3.862   2.064  1.00  0.00           H  
HETATM  127  H68 UNL     1       0.154  -3.947   3.836  1.00  0.00           H  
HETATM  128  H69 UNL     1      -1.837  -4.846   2.545  1.00  0.00           H  
HETATM  129  H70 UNL     1      -0.709  -6.159   1.979  1.00  0.00           H  
HETATM  130  H71 UNL     1      -0.238  -6.877   4.241  1.00  0.00           H  
HETATM  131  H72 UNL     1      -1.225  -5.534   4.940  1.00  0.00           H  
HETATM  132  H73 UNL     1      -3.253  -6.507   3.928  1.00  0.00           H  
HETATM  133  H74 UNL     1      -2.397  -7.600   5.034  1.00  0.00           H  
HETATM  134  H75 UNL     1      -1.147  -8.406   2.871  1.00  0.00           H  
HETATM  135  H76 UNL     1      -2.614  -7.750   1.991  1.00  0.00           H  
HETATM  136  H77 UNL     1      -2.761  -9.094   3.195  1.00  0.00           H  
CONECT    1    2   60   61   62
CONECT    2    3   63   64
CONECT    3    4   65   66
CONECT    4    5   67   68
CONECT    5    6   69   70
CONECT    6    7    7   71
CONECT    7    8   72
CONECT    8    9   73   74
CONECT    9   10   10   75
CONECT   10   11   76
CONECT   11   12   77   78
CONECT   12   13   13   79
CONECT   13   14   80
CONECT   14   15   81   82
CONECT   15   16   16   83
CONECT   16   17   84
CONECT   17   18   85   86
CONECT   18   19   19   87
CONECT   19   20   88
CONECT   20   21   89   90
CONECT   21   22   91   92
CONECT   22   23   23   24
CONECT   24   25
CONECT   25   26   93   94
CONECT   26   27   38   95
CONECT   27   28   96   97
CONECT   28   29
CONECT   29   30   30   31   32
CONECT   31   98
CONECT   32   33
CONECT   33   34   99  100
CONECT   34   35   36  101
CONECT   35  102
CONECT   36   37  103  104
CONECT   37  105
CONECT   38   39
CONECT   39   40   40   41
CONECT   41   42  106  107
CONECT   42   43  108  109
CONECT   43   44  110  111
CONECT   44   45   45  112
CONECT   45   46  113
CONECT   46   47  114  115
CONECT   47   48   48  116
CONECT   48   49  117
CONECT   49   50  118  119
CONECT   50   51   51  120
CONECT   51   52  121
CONECT   52   53  122  123
CONECT   53   54   54  124
CONECT   54   55  125
CONECT   55   56  126  127
CONECT   56   57  128  129
CONECT   57   58  130  131
CONECT   58   59  132  133
CONECT   59  134  135  136
END

HMDB0116744
     RDKit          3D
PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))
136135  0  0  0  0  0  0  0  0999 V2000
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M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
1-Osbondoyl-2-arachidonoyl-sn-glycero-3-phospho-(1'-glycerol)	HMDB
1-Osbondoyl-2-arachidonoyl-sn-glycero-3-phosphoglycerol	HMDB
PG(22:5/20:4)	HMDB
PG(22:5N6/20:4N6)	HMDB
PG(22:5W6/20:4W6)	HMDB
PG(42:9)	HMDB
Phosphatidylglycerol(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))	HMDB
Phosphatidylglycerol(22:5/20:4)	HMDB
Phosphatidylglycerol(22:5n6/20:4n6)	HMDB
Phosphatidylglycerol(22:5W6/20:4W6)	HMDB
Phosphatidylglycerol(42:9)	HMDB
GPG(22:5/20:4)	HMDB
GPG(42:9)	HMDB
1-(4Z,7Z,10Z,13Z,16Z-Docosapentaenoyl)-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phospho-(1'-glycerol)	HMDB
1-(4Z,7Z,10Z,13Z,16Z-Docosapentaenoyl)-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphoglycerol	HMDB
[(2S)-2,3-Dihydroxypropoxy][(2R)-3-[(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoyloxy]-2-[(5Z,11Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy]phosphinate	HMDB
1-osbondoyl-2-arachidonoyl-sn-glycero-3-phospho-(1'-glycerol)	SMPDB, HMDB
1-osbondoyl-2-arachidonoyl-sn-glycero-3-phosphoglycerol	SMPDB, HMDB
PG(22:5/20:4)	SMPDB, HMDB
PG(22:5n6/20:4n6)	SMPDB, HMDB
PG(22:5w6/20:4w6)	SMPDB, HMDB
PG(42:9)	SMPDB, HMDB
Phosphatidylglycerol(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))	SMPDB, HMDB
Phosphatidylglycerol(22:5/20:4)	SMPDB, HMDB
Phosphatidylglycerol(22:5n6/20:4n6)	SMPDB, HMDB
Phosphatidylglycerol(22:5w6/20:4w6)	SMPDB, HMDB
PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))	SMPDB

Chemical Formula

C₄₈H₇₇O₁₀P

Average Molecular Weight

845.108

Monoisotopic Molecular Weight

844.525435677

IUPAC Name

[(2S)-2,3-dihydroxypropoxy][(2R)-3-[(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoyloxy]-2-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy]phosphinic acid

Traditional Name

(2S)-2,3-dihydroxypropoxy((2R)-3-[(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoyloxy]-2-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy)phosphinic acid

CAS Registry Number

Not Available

SMILES

[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC

InChI Identifier

InChI=1S/C48H77O10P/c1-3-5-7-9-11-13-15-17-19-21-22-24-25-27-29-31-33-35-37-39-47(51)55-43-46(44-57-59(53,54)56-42-45(50)41-49)58-48(52)40-38-36-34-32-30-28-26-23-20-18-16-14-12-10-8-6-4-2/h11-14,17-20,22,24,26-29,32-35,45-46,49-50H,3-10,15-16,21,23,25,30-31,36-44H2,1-2H3,(H,53,54)/b13-11-,14-12-,19-17-,20-18-,24-22-,28-26-,29-27-,34-32-,35-33-/t45-,46+/m0/s1

InChI Key

AWPISBXDIROAIJ-NSZVGEBUSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phosphatidylglycerols. These are glycerophosphoglycerols in which two fatty acids are bonded to the 1-glycerol moiety through ester linkages. As is the case with diacylglycerols, phosphatidylglycerols can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

Glycerophosphoglycerols

Direct Parent

Phosphatidylglycerols

Alternative Parents

Substituents

1,2-diacylglycerophosphoglycerol
Fatty acid ester
Dialkyl phosphate
Dicarboxylic acid or derivatives
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Fatty acyl
1,2-diol
Carboxylic acid ester
Secondary alcohol
Carboxylic acid derivative
Organic oxide
Organooxygen compound
Alcohol
Organic oxygen compound
Primary alcohol
Carbonyl group
Hydrocarbon derivative
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Endogenous (HMDB: HMDB0116744)

Process

Naturally occurring process

Not Available

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	7.9	ALOGPS
logP	12.13	ChemAxon
logS	-7	ALOGPS
pKa (Strongest Acidic)	1.89	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	148.82 Å²	ChemAxon
Rotatable Bond Count	41	ChemAxon
Refractivity	251.37 m³·mol⁻¹	ChemAxon
Polarizability	96.39 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	281.517	30932474
DeepCCS	[M-H]-	279.121	30932474
DeepCCS	[M-2H]-	312.228	30932474
DeepCCS	[M+Na]+	287.43	30932474
AllCCS	[M+H]+	296.7	32859911
AllCCS	[M+H-H2O]+	296.6	32859911
AllCCS	[M+NH4]+	296.7	32859911
AllCCS	[M+Na]+	296.7	32859911
AllCCS	[M-H]-	298.9	32859911
AllCCS	[M+Na-2H]-	306.2	32859911
AllCCS	[M+HCOO]-	314.2	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))	[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC	6112.2	Standard polar	33892256
PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))	[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC	4996.2	Standard non polar	33892256
PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))	[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC	6005.4	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)) GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-13	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)) 10V, Positive-QTOF	splash10-004i-5068082190-7e0b7a3df0d7289ee0eb	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)) 20V, Positive-QTOF	splash10-004r-6195042320-2f1003b1d4acb471b3c9	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)) 40V, Positive-QTOF	splash10-0a4r-9068003410-7c255c57bf46b2c1faa9	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)) 10V, Negative-QTOF	splash10-0h00-0119020030-d36326256c64534227d1	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)) 20V, Negative-QTOF	splash10-004i-6229110100-8102b9b7b0e9b5834706	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)) 40V, Negative-QTOF	splash10-004i-9002000000-5c3b521427c5ea8da1e5	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)) 10V, Negative-QTOF	splash10-0006-0000000090-780d1b34c2a775a6836e	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)) 20V, Negative-QTOF	splash10-0ufu-0009130040-901f87f33ff2ec1e040d	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)) 40V, Negative-QTOF	splash10-0ufu-0109130040-f9e6b86a13af01291c1e	2021-09-22	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Name	SMPDB/PathBank	KEGG
Cardiolipin Biosynthesis CL(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)/22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))		Not Available
Cardiolipin Biosynthesis CL(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)/22:5(4Z,7Z,10Z,13Z,16Z)/22:5(4Z,7Z,10Z,13Z,16Z))		Not Available
Cardiolipin Biosynthesis CL(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)/22:5(4Z,7Z,10Z,13Z,16Z)/22:5(7Z,10Z,13Z,16Z,19Z))		Not Available
Cardiolipin Biosynthesis CL(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)/22:5(4Z,7Z,10Z,13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))		Not Available
Cardiolipin Biosynthesis CL(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)/22:5(7Z,10Z,13Z,16Z,19Z)/16:0)		Not Available