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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2017-09-17 08:53:40 UTC

Update Date

2020-11-09 23:30:32 UTC

HMDB ID

HMDB0131461

Secondary Accession Numbers

None

Metabolite Identification

Common Name

3,5-dimethoxy-4-(sulfooxy)benzoic acid

Description

3,5-dimethoxy-4-(sulfooxy)benzoic acid belongs to the class of organic compounds known as gallic acid and derivatives. Gallic acid and derivatives are compounds containing a 3,4,5-trihydroxybenzoic acid moiety. 3,5-dimethoxy-4-(sulfooxy)benzoic acid is a predicted metabolite generated by BioTransformer¹ that is produced by the metabolism of 4-hydroxy-3,5-dimethoxybenzoic acid. 3,5-dimethoxy-4-(sulfooxy)benzoic acid is an extremely weak basic (essentially neutral) compound (based on its pKa). It is generated by Sulfotransferase 1A3 (P0DMM9) and Sulfotransferase enzymes via a -4-O-sulfation-of-phenolic-compound reaction. This -4-O-sulfation-of-phenolic-compound occurs in humans.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0131461
     RDKit          3D
3,5-dimethoxy-4-(sulfooxy)benzoic acid
 28 28  0  0  0  0  0  0  0  0999 V2000
    2.0199    2.9725    0.8800 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7412    2.3766    0.9268 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6146    1.0304    0.5469 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7411    0.3438    0.1436 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6781   -0.9789   -0.2406 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8746   -1.6847   -0.6620 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9625   -1.0902   -0.6756 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7421   -3.0089   -1.0344 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4308   -1.5841   -0.2020 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7112   -0.9229    0.1964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9555   -1.5874    0.2167 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9796   -2.9438   -0.1843 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5990    0.3900    0.5690 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7198    1.0887    0.9749 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7273    1.9634   -0.0478 S   0  0  0  0  0  6  0  0  0  0  0  0
   -3.1645    1.1646   -1.2548 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0902    3.2462   -0.5167 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1075    2.4009    0.8432 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7413    2.3748    1.5055 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0289    4.0129    1.1975 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4020    2.9228   -0.1567 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7060    0.8648    0.1295 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6753   -3.3381   -1.9714 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4055   -2.6222   -0.5078 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1934   -3.5010    0.4039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9470   -3.4143    0.0384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7530   -3.0348   -1.2657 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8158    2.5589    0.1476 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  5  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 10 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  2  0
 15 18  1  0
 13  3  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  4 22  1  0
  8 23  1  0
  9 24  1  0
 12 25  1  0
 12 26  1  0
 12 27  1  0
 18 28  1  0
M  END


  Mrv1652308221903112D          

 18 18  0  0  0  0            999 V2000
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0164    0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8414    1.5395    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  7 10  2  0  0  0  0
  3 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 12 15  2  0  0  0  0
  5 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0131461

> <DATABASE_NAME>
hmdb

> <SMILES>
COC1=CC(=CC(OC)=C1OS(O)(=O)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C9H10O8S/c1-15-6-3-5(9(10)11)4-7(16-2)8(6)17-18(12,13)14/h3-4H,1-2H3,(H,10,11)(H,12,13,14)

> <INCHI_KEY>
RUXRRHGJTRVOSL-UHFFFAOYSA-N

> <FORMULA>
C9H10O8S

> <MOLECULAR_WEIGHT>
278.23

> <EXACT_MASS>
278.009638456

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
28

> <JCHEM_AVERAGE_POLARIZABILITY>
23.89485042117036

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3,5-dimethoxy-4-(sulfooxy)benzoic acid

> <ALOGPS_LOGP>
-0.51

> <JCHEM_LOGP>
0.5366075246666666

> <ALOGPS_LOGS>
-2.09

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
3.787980989206027

> <JCHEM_PKA_STRONGEST_ACIDIC>
-2.5503563684396466

> <JCHEM_PKA_STRONGEST_BASIC>
-4.639736036453197

> <JCHEM_POLAR_SURFACE_AREA>
119.36000000000001

> <JCHEM_REFRACTIVITY>
58.21330000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.25e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3,5-dimethoxy-4-(sulfooxy)benzoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0131461
     RDKit          3D
3,5-dimethoxy-4-(sulfooxy)benzoic acid
 28 28  0  0  0  0  0  0  0  0999 V2000
    2.0199    2.9725    0.8800 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7412    2.3766    0.9268 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6146    1.0304    0.5469 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7411    0.3438    0.1436 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6781   -0.9789   -0.2406 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8746   -1.6847   -0.6620 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9625   -1.0902   -0.6756 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7421   -3.0089   -1.0344 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4308   -1.5841   -0.2020 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7112   -0.9229    0.1964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9555   -1.5874    0.2167 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9796   -2.9438   -0.1843 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5990    0.3900    0.5690 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7198    1.0887    0.9749 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7273    1.9634   -0.0478 S   0  0  0  0  0  6  0  0  0  0  0  0
   -3.1645    1.1646   -1.2548 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0902    3.2462   -0.5167 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1075    2.4009    0.8432 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7413    2.3748    1.5055 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0289    4.0129    1.1975 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4020    2.9228   -0.1567 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7060    0.8648    0.1295 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6753   -3.3381   -1.9714 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4055   -2.6222   -0.5078 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1934   -3.5010    0.4039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9470   -3.4143    0.0384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7530   -3.0348   -1.2657 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8158    2.5589    0.1476 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  5  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 10 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  2  0
 15 18  1  0
 13  3  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  4 22  1  0
  8 23  1  0
  9 24  1  0
 12 25  1  0
 12 26  1  0
 12 27  1  0
 18 28  1  0
M  END

HEADER    PROTEIN                                 22-AUG-19   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   22-AUG-19         0                                  
HETATM    1  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
HETATM   12  S   UNK     0      -2.667   1.540   0.000  0.00  0.00           S+0
HETATM   13  O   UNK     0      -1.897   0.206   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      -3.437   2.874   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      -4.001   0.770   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       4.001  -2.310   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       5.335   0.000   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   10                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   16                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   10                                                  
CONECT    8    7    9                                                       
CONECT    9    8                                                            
CONECT   10    7    3   11                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   14   15                                             
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   12                                                            
CONECT   16    5   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   36    0
END

COMPND    HMDB0131461
HETATM    1  C1  UNL     1       2.020   2.973   0.880  1.00  0.00           C  
HETATM    2  O1  UNL     1       0.741   2.377   0.927  1.00  0.00           O  
HETATM    3  C2  UNL     1       0.615   1.030   0.547  1.00  0.00           C  
HETATM    4  C3  UNL     1       1.741   0.344   0.144  1.00  0.00           C  
HETATM    5  C4  UNL     1       1.678  -0.979  -0.241  1.00  0.00           C  
HETATM    6  C5  UNL     1       2.875  -1.685  -0.662  1.00  0.00           C  
HETATM    7  O2  UNL     1       3.962  -1.090  -0.676  1.00  0.00           O  
HETATM    8  O3  UNL     1       2.742  -3.009  -1.034  1.00  0.00           O  
HETATM    9  C6  UNL     1       0.431  -1.584  -0.202  1.00  0.00           C  
HETATM   10  C7  UNL     1      -0.711  -0.923   0.196  1.00  0.00           C  
HETATM   11  O4  UNL     1      -1.956  -1.587   0.217  1.00  0.00           O  
HETATM   12  C8  UNL     1      -1.980  -2.944  -0.184  1.00  0.00           C  
HETATM   13  C9  UNL     1      -0.599   0.390   0.569  1.00  0.00           C  
HETATM   14  O5  UNL     1      -1.720   1.089   0.975  1.00  0.00           O  
HETATM   15  S1  UNL     1      -2.727   1.963  -0.048  1.00  0.00           S  
HETATM   16  O6  UNL     1      -3.164   1.165  -1.255  1.00  0.00           O  
HETATM   17  O7  UNL     1      -2.090   3.246  -0.517  1.00  0.00           O  
HETATM   18  O8  UNL     1      -4.108   2.401   0.843  1.00  0.00           O  
HETATM   19  H1  UNL     1       2.741   2.375   1.506  1.00  0.00           H  
HETATM   20  H2  UNL     1       2.029   4.013   1.197  1.00  0.00           H  
HETATM   21  H3  UNL     1       2.402   2.923  -0.157  1.00  0.00           H  
HETATM   22  H4  UNL     1       2.706   0.865   0.130  1.00  0.00           H  
HETATM   23  H5  UNL     1       2.675  -3.338  -1.971  1.00  0.00           H  
HETATM   24  H6  UNL     1       0.406  -2.622  -0.508  1.00  0.00           H  
HETATM   25  H7  UNL     1      -1.193  -3.501   0.404  1.00  0.00           H  
HETATM   26  H8  UNL     1      -2.947  -3.414   0.038  1.00  0.00           H  
HETATM   27  H9  UNL     1      -1.753  -3.035  -1.266  1.00  0.00           H  
HETATM   28  H10 UNL     1      -4.816   2.559   0.148  1.00  0.00           H  
CONECT    1    2   19   20   21
CONECT    2    3
CONECT    3    4    4   13
CONECT    4    5   22
CONECT    5    6    9    9
CONECT    6    7    7    8
CONECT    8   23
CONECT    9   10   24
CONECT   10   11   13   13
CONECT   11   12
CONECT   12   25   26   27
CONECT   13   14
CONECT   14   15
CONECT   15   16   16   17   17
CONECT   15   18
CONECT   18   28
END

HMDB0131461
     RDKit          3D
3,5-dimethoxy-4-(sulfooxy)benzoic acid
 28 28  0  0  0  0  0  0  0  0999 V2000
    2.0199    2.9725    0.8800 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7412    2.3766    0.9268 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6146    1.0304    0.5469 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7411    0.3438    0.1436 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6781   -0.9789   -0.2406 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8746   -1.6847   -0.6620 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9625   -1.0902   -0.6756 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7421   -3.0089   -1.0344 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4308   -1.5841   -0.2020 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7112   -0.9229    0.1964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9555   -1.5874    0.2167 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9796   -2.9438   -0.1843 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5990    0.3900    0.5690 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7198    1.0887    0.9749 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7273    1.9634   -0.0478 S   0  0  0  0  0  6  0  0  0  0  0  0
   -3.1645    1.1646   -1.2548 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0902    3.2462   -0.5167 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1075    2.4009    0.8432 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7413    2.3748    1.5055 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0289    4.0129    1.1975 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4020    2.9228   -0.1567 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7060    0.8648    0.1295 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6753   -3.3381   -1.9714 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4055   -2.6222   -0.5078 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1934   -3.5010    0.4039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9470   -3.4143    0.0384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7530   -3.0348   -1.2657 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8158    2.5589    0.1476 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  5  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 10 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  2  0
 15 18  1  0
 13  3  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  4 22  1  0
  8 23  1  0
  9 24  1  0
 12 25  1  0
 12 26  1  0
 12 27  1  0
 18 28  1  0
M  END

View in JSmol View NMR Assignments View Stereo Labels

Synonyms

Value	Source
3,5-Dimethoxy-4-(sulfooxy)benzoate	Generator
3,5-Dimethoxy-4-(sulphooxy)benzoate	Generator
3,5-Dimethoxy-4-(sulphooxy)benzoic acid	Generator
syringic acid-4-sulfate	HMDB
3,5-dimethoxybenzoic acid-4-sulfate	HMDB

Chemical Formula

C₉H₁₀O₈S

Average Molecular Weight

278.23

Monoisotopic Molecular Weight

278.009638456

IUPAC Name

3,5-dimethoxy-4-(sulfooxy)benzoic acid

Traditional Name

3,5-dimethoxy-4-(sulfooxy)benzoic acid

CAS Registry Number

Not Available

SMILES

COC1=CC(=CC(OC)=C1OS(O)(=O)=O)C(O)=O

InChI Identifier

InChI=1S/C9H10O8S/c1-15-6-3-5(9(10)11)4-7(16-2)8(6)17-18(12,13)14/h3-4H,1-2H3,(H,10,11)(H,12,13,14)

InChI Key

RUXRRHGJTRVOSL-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as gallic acid and derivatives. Gallic acid and derivatives are compounds containing a 3,4,5-trihydroxybenzoic acid moiety.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Benzoic acids and derivatives

Direct Parent

Gallic acid and derivatives

Alternative Parents

Substituents

Gallic acid or derivatives
M-methoxybenzoic acid or derivatives
Phenylsulfate
Arylsulfate
Dimethoxybenzene
M-dimethoxybenzene
Benzoic acid
Anisole
Phenoxy compound
Benzoyl
Phenol ether
Methoxybenzene
Alkyl aryl ether
Sulfuric acid monoester
Sulfate-ester
Sulfuric acid ester
Organic sulfuric acid or derivatives
Monocarboxylic acid or derivatives
Ether
Carboxylic acid
Carboxylic acid derivative
Organooxygen compound
Organic oxide
Organic oxygen compound
Hydrocarbon derivative
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Urine (PMID: 32966057)

Non-excretory biofluid

Blood (PMID: 32966057)

Source

Endogenous

Endogenous (HMDB: HMDB0131461)

Exogenous

Food

Tea

Tea products (HMDB: HMDB0131461)

Cocoa and cocoa product

Cocoa and cocoa products (HMDB: HMDB0131461)

Coffee and coffee product

Coffee product

Coffee products (HMDB: HMDB0131461)

Fat and oil

Olive oil (HMDB: HMDB0131461)

Fruit

Fruits (HMDB: HMDB0131461)

Vegetable

Vegetables (HMDB: HMDB0131461)

Cereal and cereal product

Cereal product

Whole grain cereal products (HMDB: HMDB0131461)

Legumes (HMDB: HMDB0131461)

Nut

Nuts (HMDB: HMDB0131461)

Beverage

Alcoholic beverage

Red wine (HMDB: HMDB0131461)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	-0.51	ALOGPS
logP	0.54	ChemAxon
logS	-2.1	ALOGPS
pKa (Strongest Acidic)	-2.6	ChemAxon
pKa (Strongest Basic)	-4.6	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	119.36 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	58.21 m³·mol⁻¹	ChemAxon
Polarizability	23.89 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	164.094	31661259
DarkChem	[M-H]-	159.802	31661259
DeepCCS	[M+H]+	157.232	30932474
DeepCCS	[M-H]-	154.874	30932474
DeepCCS	[M-2H]-	187.76	30932474
DeepCCS	[M+Na]+	163.325	30932474
AllCCS	[M+H]+	159.4	32859911
AllCCS	[M+H-H2O]+	155.9	32859911
AllCCS	[M+NH4]+	162.7	32859911
AllCCS	[M+Na]+	163.6	32859911
AllCCS	[M-H]-	153.2	32859911
AllCCS	[M+Na-2H]-	153.4	32859911
AllCCS	[M+HCOO]-	153.7	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
3,5-dimethoxy-4-(sulfooxy)benzoic acid	COC1=CC(=CC(OC)=C1OS(O)(=O)=O)C(O)=O	4127.9	Standard polar	33892256
3,5-dimethoxy-4-(sulfooxy)benzoic acid	COC1=CC(=CC(OC)=C1OS(O)(=O)=O)C(O)=O	1945.8	Standard non polar	33892256
3,5-dimethoxy-4-(sulfooxy)benzoic acid	COC1=CC(=CC(OC)=C1OS(O)(=O)=O)C(O)=O	2323.7	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
3,5-dimethoxy-4-(sulfooxy)benzoic acid,1TMS,isomer #1	COC1=CC(C(=O)O[Si](C)(C)C)=CC(OC)=C1OS(=O)(=O)O	2265.0	Semi standard non polar	33892256
3,5-dimethoxy-4-(sulfooxy)benzoic acid,1TMS,isomer #2	COC1=CC(C(=O)O)=CC(OC)=C1OS(=O)(=O)O[Si](C)(C)C	2270.3	Semi standard non polar	33892256
3,5-dimethoxy-4-(sulfooxy)benzoic acid,2TMS,isomer #1	COC1=CC(C(=O)O[Si](C)(C)C)=CC(OC)=C1OS(=O)(=O)O[Si](C)(C)C	2253.5	Semi standard non polar	33892256
3,5-dimethoxy-4-(sulfooxy)benzoic acid,2TMS,isomer #1	COC1=CC(C(=O)O[Si](C)(C)C)=CC(OC)=C1OS(=O)(=O)O[Si](C)(C)C	2428.4	Standard non polar	33892256
3,5-dimethoxy-4-(sulfooxy)benzoic acid,2TMS,isomer #1	COC1=CC(C(=O)O[Si](C)(C)C)=CC(OC)=C1OS(=O)(=O)O[Si](C)(C)C	3129.1	Standard polar	33892256
3,5-dimethoxy-4-(sulfooxy)benzoic acid,1TBDMS,isomer #1	COC1=CC(C(=O)O[Si](C)(C)C(C)(C)C)=CC(OC)=C1OS(=O)(=O)O	2543.9	Semi standard non polar	33892256
3,5-dimethoxy-4-(sulfooxy)benzoic acid,1TBDMS,isomer #2	COC1=CC(C(=O)O)=CC(OC)=C1OS(=O)(=O)O[Si](C)(C)C(C)(C)C	2525.1	Semi standard non polar	33892256
3,5-dimethoxy-4-(sulfooxy)benzoic acid,2TBDMS,isomer #1	COC1=CC(C(=O)O[Si](C)(C)C(C)(C)C)=CC(OC)=C1OS(=O)(=O)O[Si](C)(C)C(C)(C)C	2757.6	Semi standard non polar	33892256
3,5-dimethoxy-4-(sulfooxy)benzoic acid,2TBDMS,isomer #1	COC1=CC(C(=O)O[Si](C)(C)C(C)(C)C)=CC(OC)=C1OS(=O)(=O)O[Si](C)(C)C(C)(C)C	2999.8	Standard non polar	33892256
3,5-dimethoxy-4-(sulfooxy)benzoic acid,2TBDMS,isomer #1	COC1=CC(C(=O)O[Si](C)(C)C(C)(C)C)=CC(OC)=C1OS(=O)(=O)O[Si](C)(C)C(C)(C)C	3216.4	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid GC-MS (1 TMS) - 70eV, Positive	splash10-00dr-9172000000-c5be64bb698ee872a869	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid GC-MS (Non-derivatized) - 70eV, Positive	splash10-001j-1960000000-1351777cb11bc5e3659f	2017-11-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Experimental LC-MS/MS	LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 30V, Negative-QTOF	splash10-00ea-1900000000-d630901fd4eb800b9116	2021-09-20	HMDB team, MONA	View Spectrum
Experimental LC-MS/MS	LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 10V, Negative-QTOF	splash10-0002-0930000000-e2e684920c657e2cfe83	2021-09-20	HMDB team, MONA	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 10V, Positive-QTOF	splash10-03fr-0090000000-adc5be1e920640da163a	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 20V, Positive-QTOF	splash10-01q9-0790000000-b35ae7525f11b49d6cc6	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 40V, Positive-QTOF	splash10-001i-4930000000-84d2f2a9feafec878d4e	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 10V, Negative-QTOF	splash10-004i-0090000000-c17b1598d39c53e329a3	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 20V, Negative-QTOF	splash10-003s-0950000000-5b4d66506251d0e5993d	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 40V, Negative-QTOF	splash10-001i-2900000000-e48bf60d5b08122d07e4	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 10V, Negative-QTOF	splash10-0059-0090000000-aa9a8957c69437833449	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 20V, Negative-QTOF	splash10-003r-0090000000-79bc0f5e3ca28c91df0a	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 40V, Negative-QTOF	splash10-000t-9640000000-3910f6dcaece1dbb2ff7	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 10V, Positive-QTOF	splash10-004i-0090000000-ec870bfd02d587f5e543	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 20V, Positive-QTOF	splash10-0f6t-0910000000-a51700b809b15dc25643	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3,5-dimethoxy-4-(sulfooxy)benzoic acid 40V, Positive-QTOF	splash10-001i-1900000000-a5690c64785788961cf1	2021-09-22	Wishart Lab	View Spectrum

NMR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted 1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood
Urine

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Adult (>18 years old)	Both	Normal	32966057	details
Urine	Detected but not Quantified	Not Quantified	Adult (>18 years old)	Both	Normal	32966057	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

85519434

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Djoumbou Feunang, Yannick (2017). Cheminformatics Tools for Enabling Metabolomics, 2017 (PhD thesis). University of Alberta.

Showing metabocard for 3,5-dimethoxy-4-(sulfooxy)benzoic acid (HMDB0131461)

MOL for HMDB0131461 (3,5-dimethoxy-4-(sulfooxy)benzoic acid)

3D MOL for HMDB0131461 (3,5-dimethoxy-4-(sulfooxy)benzoic acid)

3D SDF for HMDB0131461 (3,5-dimethoxy-4-(sulfooxy)benzoic acid)

3D-SDF for HMDB0131461 (3,5-dimethoxy-4-(sulfooxy)benzoic acid)

PDB for HMDB0131461 (3,5-dimethoxy-4-(sulfooxy)benzoic acid)

3D PDB for HMDB0131461 (3,5-dimethoxy-4-(sulfooxy)benzoic acid)

SMILES for HMDB0131461 (3,5-dimethoxy-4-(sulfooxy)benzoic acid)

INCHI for HMDB0131461 (3,5-dimethoxy-4-(sulfooxy)benzoic acid)

Structure for HMDB0131461 (3,5-dimethoxy-4-(sulfooxy)benzoic acid)

3D Structure for HMDB0131461 (3,5-dimethoxy-4-(sulfooxy)benzoic acid)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra

NMR Spectra